in the next release.
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
Upton NY, 11973
Homepage:http://xafs.org/BruceRavel
Software:https
measuring
those defined mixtures. That takes time away from measuring the real
samples. But if you end up in a better position to interpret the real
data, that seems like a win to me.
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards
. If there are still problems -- then I need to know.
B
PS: It is possible that the x15b.demeter_conf file has the columns
for narrow and wide backwards. Let me know if you think that's the
case. I am writing this email without wandering down to X15B to ask
Paul the details.
--
Bruce Ravel
suggestion about what goes wrong and what can be done to resolve this
problem?
Feff failed to run correctly.
Could you send me the atoms.inp, CIF file, or feff.inp file that you
started with?
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards
believe that Ifeffit's normally compiled-in limit on data sets is
16.
Your problem is one I have never seen before. Could you mail me the
project file that triggers it. I need to watch it happen in order to
understand what's going on.
B
--
Bruce Ravel bra
/10.1021/ac060476m, but
note that great care was taken in the work to make the ensemble of
measurements in a consistent fashion.
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
Upton NY, 11973
Homepage:http://xafs.org/BruceRavel
Software:https://github.com
the king of the world.
I apologize for the gender bending, Zhaomo. Thanks for seeing it with
a smile.
Cheers,
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
are for command line version. I don't understand many of the parameters in
ARTEMIS and any detailed tutorial will really help. I don't want to tweak
parameters without understanding them completely.
http://lmgtfy.com/?q=exafs+artemis
--
Bruce Ravel bra...@bnl.gov
information.
OK. I cloned a copy of wxmplot from your github repo and installed it
by hand with no problem. However, same result when trying to setup
xraylarch.
Any advice?
Thx,
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards
to investigate further and have a computer running
12.04 or lower, I would be interested to know if you run into the same
problem.
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A
, eastern characters or anything else involving
unicode?
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
Upton NY, 11973
Homepage:http
and save.
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
Upton NY, 11973
Homepage:http://xafs.org/BruceRavel
Software:https
(E) to also be identical, but it is not. While it is clear that merging
in mu(E) is averaging the groups, it seems merging in norm(E) is not. So
what is merging in norm(E) doing?
Thank you,
George
--
Bruce Ravel bra...@bnl.gov
National Institute
rather than after the fact.
I know that's not helpful right now, but hopefully it will be the next
time you go to the beamline.
Cheers,
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS
, develop the film, see where the white spots were, and put Pb tape on
the detector at those spots. Told you it was painful!
These days, I suspect the painful part is *finding* polaroid film!
:)
B
--
Bruce Ravel bra...@bnl.gov
National Institute
: Contents of Ifeffit digest...
Today's Topics:
1. Help: Artemis closes without error message when open .cif
file (jiahui)
2. Re: Help: Artemis closes without error message when open.cif
file (Bruce Ravel)
3. Re: Help: Artemis closes without error message when
used in
each part of the MDS fit.
I don't plan on exploring this myself. But if someone wanted to do so
and attempt to convince me that it should be implemented in the
software, I am -- as always -- willing to listen.
Cheers,
B
--
Bruce Ravel bra
on with my work? I am using
Demeter 0.9.13 version.
Thank you very much for your help,
[jiahui]
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explain me about this issue ?
Thank you very much in advance.
Best,
Khuong Huynh
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
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for the plotting backend. I need to think
about that
As you say, you can get the gnuplot backend working by changing the
value of plot-plotwith.
Cheers,
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods
as advertised in the next release.
Thanks again, Linda, for reporting this problem.
Cheers,
B
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National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
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to non-zero values. This behavior is
intended to be helpful to the user who is setting up a fitting model,
but may be confusing the user who is simply trying to visualize Feff's
output. Look at the path pages and at the GDS window. This same
issue was discussed back in September.
B
--
Bruce
process. Thanks!
Regards
Linda
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Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
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Homepage:http://xafs.org/BruceRavel
= 0.00305432# +/- 0. [0.00300]
def
parameters:
b = 0.8000# [min(max(0.8,amp),1.0)]
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards
be a
statistics disaster.
In short, you should embrace the correlations between the parts of
the problem.
HTH,
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A
*
*Best Regards*
*Dooshaye Moonshiram*
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Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
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Homepage:http://xafs.org/BruceRavel
the 9 first fits to the plotting
list.
Any suggestions? am I missing something obvious? or is this (as the
tutorial implies) a functionality that hasnt been added yet?
thanks,
georges
--
Bruce Ravel bra...@bnl.gov
National Institute
to the
Artemis Users' Guide. I have put a lot of effort into it in recent
weeks. It is still not complete, but it is much enhanced.
http://bruceravel.github.com/demeter/artug/index.html
Regards,
B
--
Bruce Ravel bra...@bnl.gov
National Institute
are doing
anything wrong.
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
Upton NY, 11973
Homepage:http://xafs.org/BruceRavel
Software
am hesitant to trust any of my results right now.
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
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Homepage:http
will be named as you
requested.
As always, thanks for the feedback.
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
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Homepage
that were reported last week on
the mailing list. Here is the list of changes:
https://github.com/bruceravel/demeter/blob/master/Changes.org
Regards,
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods
the QFS tool for atoms beyond the first
coordination shell, please read that wiki page all the way to the
end.
Regards,
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A
it was a problem.
As I say often, I am very grateful when people make a bug report. It
is only through this sort of communication that the software can
improve.
Thanks,
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
it worked out for you.
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
Upton NY, 11973
Homepage:http://xafs.org/BruceRavel
Software
and reinstalling the software too but the issue persists - it all works
well (when startingg from scratch) until it is saved and then tried to
reopen.
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS
/installation.pod.html
Reporting bugs:
http://bruceravel.github.com/demeter/pods/bugs.pod.html
or use the github issue tracker:
https://github.com/bruceravel/demeter/issues
As always, use this mailing list to report problems or to make
suggestions.
Regards,
B
--
Bruce Ravel
compatibility mode I choose before starting.
I noticed this when looking at the project file you sent. Thanks for
uncovering this bug. It is already fixed at GitHub and will be fixed
in the next release of the windows installer.
B
--
Bruce Ravel bra...@bnl.gov
::__ANON__('Wx::Frame=HASH(0x4c0b39c)',
'Wx::CommandEvent=SCALAR(0xc46f51c)') called at
C:\strawberry\perl\site\bin\dartemis.bat line 29 eval {...} called at
C:\strawberry\perl\site\bin\dartemis.bat line 29
--
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National Institute
planning on making a bug fix release in the next day
or two.
Sorry for the inconvenience.
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
Upton
/demeter/blob/master/Changes.org
Installation instructions:
http://bruceravel.github.com/demeter/pods/installation.pod.html
Reporting bugs:
http://bruceravel.github.com/demeter/pods/bugs.pod.html
As always, use this mailing list to report problems or to make
suggestions.
Regards,
B
--
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B
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Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
Upton NY, 11973
Homepage:http://xafs.org/BruceRavel
Software:https://github.com
crystallographic data and appearedthe following
message after running atoms. These sites: La1 Sr1 generate one or more
common positions and their occupancies sum to more than 1.
Yours sincerely: Washington
C. M. Gomes
--
Bruce Ravel bravel at bnl.gov
, you have reported a bug or requested a
feature that is not in this release, please remind me!
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level.
Regards,
Daniel Whittaker, MChem
Nuclear FiRST DTC PhD Student
The University of Manchester
Oxford Road
Manchester
M13 9PL
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS
. Given that I will soon
be leaving for conferences in distant places on the globe, I probably
won't be able to release a version of Demeter that uses Feff8
effectively until Spetember.
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards
for the response. I thought I had downloaded the latest version of
Athena (twice I tried) but looking at the image you sent demonstrates that
I have not.
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron
in a fit to EXAFS
data.
There is only one absorber in a cluster in a Feff calculation, so
there is only one atom for which an interstitial energy is calculated.
Nothing guarantees that Vint will be the same if you switch which atom
in the custer is the absorber.
B
--
Bruce Ravel
), and thus fit this group does not
give me the best fit possible. Are these two fitting processes using a
different fitting algorithm?
I attached one example to this email. I am using a library of 8 different
Fe standards to fit the unknown spectra.
Thanks for your attention
--
Bruce
.
This Google Docs thing does not seem to be your friend. Why not just
attach the project file to your email. They are usually not that big.
The largest one on my computer is under 3 MB.
Drat!
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards
are comparing the best fit from the
combinatorial sequence with the individual fit that uses all 8
standards.
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
than me to have Ifeffit's memory
limitations go away!
B
PS: Even the non-adventurous should be using the current version of
Demeter+Ifeffit, as I told Mr. Yadav yesterday.
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Chinese or some other non-Western text?
Any advice?
Thanks,
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
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Homepage
Gómez.
Estudiante de doctorado en Física Teórica,
CINVESTAV, Unidad Mérida, México.
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or cygwin), it may be in the path before the one
that gets installed with Demeter. That will certainly be a problem.
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A
examination of your project file suggests you are off to a
unlikely start.
Good luck,
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
Upton NY
you could give would be greatly appreciated.
-Walter
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
Upton NY, 11973
Homepage:http
:
https://github.com/bruceravel/XAS-Education/tree/master/Examples
Those are all the data used in my various XAS training lectures.
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS
to VLC, although any video
player should work. Presumably, something similar can be done in
other browsers.
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
/search.html
This
http://xafs.org
is generally useful.
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
Upton NY, 11973
Homepage:http
approached the problem of mixed occupancy.
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
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Homepage:http://xafs.org
of partial
occupancy. Sorry.
These .cif files work fine with the old version of Artemis/Atoms. Is there
currently a way around this problem, or is this something that will be
addresses in later version.
Thank you for your help.
Sincerely,
Matt Frith
--
Bruce Ravel
of
1. energy
2. the data
3. the fit
4. the residual
5. each component
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
.
Happily, this sort of thing has been a relatively rare event. Matt has done
an amazing job over the years of keeping the signal to noise ratio very high
on the this mailing list. Hopefully that bit of noise won't be repeated.
Regards,
Bruce
--
Bruce Ravel
.
Eva,
See the Molecule section of the noxtal.pdf file at
https://github.com/bruceravel/XAS-Education/downloads
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A
?!
This is something that somoeone with a bit of C++ knowledge could do
to contribute to the Ifeffit project. I don't think it would take
very long and it would have a profound impact on how people use
Artemis.
B
On Monday, April 23, 2012 09:20:21 am Bruce Ravel wrote:
Is there an easy way
C:\Users\username\AppData\Roaming\ on your computer. Can you try
one of the following:
* Open a command windows and type echo %APPDATA%, then look in
that location.
* Search for the file demeter.ini using the file manager.
It's gotta be someplace!
B
--
Bruce Ravel
it's not a great time for me
to test things on the beamline computer and all my other computers are
WinXp machines.
In the worst case, I'll look into this next week. If I figure
anything out before then, I'll let you know.
B
--
Bruce Ravel bra...@bnl.gov
, Building 725A-X3
Upton, NY 11973
efarqu...@bnl.gov
+1-631-344-8174
From: Bruce Ravel bra...@bnl.gov
To: XAFS Analysis using Ifeffit ifeffit@millenia.cars.aps.anl.gov
Sent: Tuesday, April 17, 2012 5:55 PM
Subject: Re: [Ifeffit] data processing - not all
other
things) were being handled incorrectly in the difference spectrum.
The next release of Demeter will fix that problem. The difference
spectrum page in Athena will still only have limited functionality,
but at least what it has should work correctly.
Thanks,
B
--
Bruce Ravel
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
Upton NY, 11973
My homepage:http://xafs.org/BruceRavel
EXAFS software: http://cars9.uchicago.edu
=EXAFS_calculation
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
Upton NY, 11973
My homepage:http://xafs.org/BruceRavel
EXAFS software
. It is
almost certainly impossible to make a plot of all 3000 spectra at once
with Ifeffit, but it is quite possible to process the data
sequentially with Ifeffit and then write the data to a format that
some other, more capable plotting program can handle.
B
--
Bruce Ravel
a fairly crappy CIF parser (which was not written by me, I hasten
to add!).
But anything that works is worth doing, I suppose.
Your bug will be fixed in the next release. Sorry again for the long
wait -- I really do take all bug reports very seriously.
B
--
Bruce Ravel
other agency.
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
Upton NY, 11973
My homepage:http://xafs.org/BruceRavel
EXAFS software: http
should have a moment to look into your CIF
file tomorrow, so hopefully I'll be responding substantively soon.
B
--
Bruce Ravel bravel at bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A
not much I can do to help with the information given. Can I see the
project file in question?
B
--
Bruce Ravel bravel at bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building
. Will it be right? Who knows!
B
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Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
Upton NY, 11973
My homepage:http://xafs.org/BruceRavel
EXAFS software
file.
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
Upton NY, 11973
My homepage:http://xafs.org/BruceRavel
EXAFS software: http
a command prompt
and type perl -V? For the latter, I am most interested in the list of
paths under the @INC heading, which is the last thing written to the
screen.
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron
.
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
Upton NY, 11973
My homepage:http://xafs.org/BruceRavel
EXAFS software: http://cars9
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Synchrotron Methods Group at NSLS
to make sure the input data has not
been somehow corrupted is a good one.
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
Upton NY, 11973
My
/master/win/inno/strawberry.iss
I am happy to make a change so this works better for you, but I don't know
what change to make.
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS
.
But it would be nice.
That's a reasonable request. I'll put it on the to do list for the new
version of Athena.
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
regards, euG
This might be what you are looking for:
http://dx.doi.org/10.1088/0953-4075/33/15/301
A little bit of time with google scholar turns up a bunch of other
results in both energy and R space.
B
--
Bruce Ravel bra...@bnl.gov
National Institute
pluguin can handle the examples you
attached. I have started working on adapting the DUBBLE plugin to
handle your other examples of SRS data (DUBBLE has for years used the
same data acquisition system as the old SRS XAS beamlines).
I'll let you know what I come up with.
Regards,
B
--
Bruce
page of
http://cars9.uchicago.edu/ifeffit/BruceRavel/Horae
I am not sure how that happened. I will look to see if I have a copy
of that Scott's examples lying around. If I find one, I'll post on
the wiki and let you know.
B
--
Bruce Ravel bra...@bnl.gov
a copy of the Calvin_ZnO.zip file and uploaded it as an
attachment to this page:
http://cars9.uchicago.edu/ifeffit/BruceRavel/Horae
Go there, scroll down, and try again to download it. It should work
now.
B
--
Bruce Ravel bra...@bnl.gov
National
the practice of citing typical
uncertainties.
B
P.S. This paper by Corwin Booth about error analysis was one of my
favorite presentations at the last XAFS conference
http://dx.doi.org/10.1088/1742-6596/190/1/012028
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National
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
Upton NY, 11973
My homepage:http://xafs.org/BruceRavel
EXAFS software: http://cars9
reported
in Artemis is a valid one. I don't recall off the top of my head,
but I will look at the codes.
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building
at
source code. Details are not unknowable, they just might not be
written down anywhere beside the source code.
Here is the top of Ifeffit:
http://cars9.uchicago.edu/svn/ifeffit/trunk/
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards
.
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
Upton NY, 11973
My homepage:http://xafs.org/BruceRavel
EXAFS software: http://cars9
line
by typing dartemis, then cut and paste the error messages from the
crash into your email.
When the new software crashes, a useful bug report contains those
error messages. If you do not send me those error messages, I will not
be able to help you.
B
--
Bruce Ravel
. And this fix
has already been pushed to github.
Thanks for finding this problem,
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
Upton NY
experimentally.
You chose really similar names for the data groups.
And I am easily confused :)
B
--
Bruce Ravel bra...@bnl.gov
National Institute of Standards and Technology
Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
Building 535A
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