Re: [Ifeffit] Bug report: Artemis cannot re-open saved projects
On 06/25/2014 02:31 AM, Badari Rao wrote: The new release is working fine in windows 7 64 bit. I was able to re-open a saved file. Thank you very much. Great! However, there is one more problem happening. When I re-open a previous file and simply press on save and then close it (I did not do anything else at all), all the data is lost. My file size which was 179KB, reduced to 1KB and when I re-opened it, there was nothing stored in it. There is no problem if I do more fitting and then save the data. This is a minor problem but a dangerous as one might lose all his hard-work done in fitting the data. Well, you are correct saying that it is surprising behavior for imported data to be lost if you save before having done a fit. I'll look into it. However, if you have done a lot of hard work, you have probably hit the fit button at least once. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage:http://xafs.org/BruceRavel Software:https://github.com/bruceravel ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
Re: [Ifeffit] Bug report: Artemis cannot re-open saved projects
On 06/25/2014 04:03 PM, Bruce Ravel wrote: However, there is one more problem happening. When I re-open a previous file and simply press on save and then close it (I did not do anything else at all), all the data is lost. My file size which was 179KB, reduced to 1KB and when I re-opened it, there was nothing stored in it. There is no problem if I do more fitting and then save the data. This is a minor problem but a dangerous as one might lose all his hard-work done in fitting the data. Well, you are correct saying that it is surprising behavior for imported data to be lost if you save before having done a fit. I'll look into it. However, if you have done a lot of hard work, you have probably hit the fit button at least once. The situation where the data is lost if you save a project before doing a fit will be fixed in the next release. This afternoon, I have been working on setting up a computer to make a 32-bit build of Demeter. Once that is ready and tested, I will properly release 0.9.20. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage:http://xafs.org/BruceRavel Software:https://github.com/bruceravel ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
Re: [Ifeffit] Bug report: Artemis cannot re-open saved projects
I'd guess that the empty fits/ folder is causing the restore_fit() function in Demeter/UI/Artemis/Project.pm to fail to restore any fits. It's easy enough to reproduce: Start Artemis, open any Feff input file, run feff, load no data. Save the project, and quit. The project cannot be reopened. Don't know what the best solution is --Matt On Tue, Jun 24, 2014 at 11:21 AM, Badari Rao badari@gmail.com wrote: Hello Sir, I wanted to report that I am facing the same problem as the one faced by Mengling Stuckman (dated: Wed, 19 Mar 2014 11:53:10 -0700.) It does not appear to be problem with the operating system because I am facing the same problem in systems with windows 7 as well as windows xp. I have tried a fresh install on a new system with windows 7 os, and the same problem occurred. Even a simple artemis file in which I have just imported and saved the processed file from athena cannot be re-opened in artemis. Kindly sort out the problem. I have attached one sample artemis file which is giving the problem and also the demeter log file from %APPDATA%\demeter. https://www.mail-archive.com/search?l=ifeffit%40millenia.cars.aps.anl.govq=from:%22Mengling+Stuckman%22o=newest Thanking You, -- Yours Sincerely, Badari Narayana. A. R. Ph.D Student, Nanoscience and Nanotechnology, c/o Prof Rajeev Ranjan, Electroceramics Lab, Department of Materials Engineering, Indian Institute of Science. ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
Re: [Ifeffit] Bug report: Artemis cannot re-open saved projects
On 06/24/2014 12:21 PM, Badari Rao wrote: I wanted to report that I am facing the same problem as the one faced by Mengling Stuckman (dated: Wed, 19 Mar 2014 11:53:10 -0700.) It does not appear to be problem with the operating system because I am facing the same problem in systems with windows 7 as well as windows xp. I have tried a fresh install on a new system with windows 7 os, and the same problem occurred. Even a simple artemis file in which I have just imported and saved the processed file from athena cannot be re-opened in artemis. Kindly sort out the problem. I have attached one sample artemis file which is giving the problem and also the demeter log file from %APPDATA%\demeter. Here is an early look at the next release. Could you give it a try and let me know if it solves the problem for you. (It works for me on your example project file.) https://s3.amazonaws.com/demeter4xas/Demeter_Installer_for_Windows_0.9.20_pre5.exe B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage:http://xafs.org/BruceRavel Software:https://github.com/bruceravel ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
Re: [Ifeffit] Bug report: Artemis cannot re-open saved projects
Here is an early look at the next release. Could you give it a try and let me know if it solves the problem for you. (It works for me on your example project file.) https://s3.amazonaws.com/demeter4xas/Demeter_Installer_for_Windows_0.9.20_pre5.exe https://s3.amazonaws.com/demeter4xas/Demeter_Installer_for_Windows_0.9.20_pre5.exe On a 32-bit Windows 7 system, this isn't working for me.With a fresh install I get C:\strawberry\perlbin\perl5.16.3.exe This version of C:\strawberry\perl\bin\perl5.16.3.exe is not compatible with the version of Windows you're running. Check your computer's system information to see whether you need a x86 (32-bit) or x64 (64-bit) version of the program, and then contact the software publisher. --Matt ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
Re: [Ifeffit] Bug report: Artemis cannot re-open saved projects
On 06/24/2014 02:28 PM, Matt Newville wrote: Here is an early look at the next release. Could you give it a try and let me know if it solves the problem for you. (It works for me on your example project file.) https://s3.amazonaws.com/demeter4xas/Demeter_Installer_for_Windows_0.9.20_pre5.exe https://s3.amazonaws.com/demeter4xas/Demeter_Installer_for_Windows_0.9.20_pre5.exe On a 32-bit Windows 7 system, this isn't working for me.With a fresh install I get Good point. The thing on the other end of that link will only work on a 64 bit system. I am going to build a 32-bit version as well, but haven't gotten around to it yet. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage:http://xafs.org/BruceRavel Software:https://github.com/bruceravel ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
Re: [Ifeffit] Bug report: Artemis cannot re-open saved projects
Dear all, Just want to add, on a 64bit Windows 8 it installed without any problem. (If I have understood the problem being discussed here correctly), I have performed following steps: 1- Opened Artemis 2- Imported Atoms file and run Feff Calculation 3- Saved the project 4- Opened the saved project file, it opens with previous Feff Calculations along with a nice message It seems that you have not actually performed a fit in this fitting project Regards, /Shoaib -Original Message- From: ifeffit-boun...@millenia.cars.aps.anl.gov [mailto:ifeffit-boun...@millenia.cars.aps.anl.gov] On Behalf Of Bruce Ravel Sent: Wednesday, June 25, 2014 3:33 AM To: XAFS Analysis using Ifeffit Subject: Re: [Ifeffit] Bug report: Artemis cannot re-open saved projects On 06/24/2014 02:28 PM, Matt Newville wrote: Here is an early look at the next release. Could you give it a try and let me know if it solves the problem for you. (It works for me on your example project file.) https://s3.amazonaws.com/demeter4xas/Demeter_Installer_for_Windows_0.9 .20_pre5.exe https://s3.amazonaws.com/demeter4xas/Demeter_Installer_for_Windows_0. 9.20_pre5.exe On a 32-bit Windows 7 system, this isn't working for me.With a fresh install I get Good point. The thing on the other end of that link will only work on a 64 bit system. I am going to build a 32-bit version as well, but haven't gotten around to it yet. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage:http://xafs.org/BruceRavel Software:https://github.com/bruceravel ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
Re: [Ifeffit] Bug report: Artemis cannot re-open saved projects
On 03/20/2014 09:29 AM, Bruce Ravel wrote: On 03/20/2014 09:22 AM, Mengling Stuckman wrote: I'm sending a couple. One is new that I didn't do any fit. The other is old that contained my fitting. Both of them can't open in my Artemis. I'll take a look. B Mengling, I haven't forgotten about your problem, but I also haven't yet found a free moment to take a look. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage:http://xafs.org/BruceRavel Software:https://github.com/bruceravel ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
Re: [Ifeffit] Bug report: Artemis cannot re-open saved projects
On 03/20/2014 09:22 AM, Mengling Stuckman wrote: I'm sending a couple. One is new that I didn't do any fit. The other is old that contained my fitting. Both of them can't open in my Artemis. I'll take a look. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage:http://xafs.org/BruceRavel Software:https://github.com/bruceravel ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
Re: [Ifeffit] Bug report: Artemis cannot re-open saved projects
On 03/20/2014 09:33 AM, Mengling Yi Stuckman wrote: Sorry I think my attachment didn't go through. Maybe the zip file will work. They did. You can stop sending things now ;) I see the same problem on my computer with your AZTCLP file. *That's* why you send an example. Now I have a fighting chance of figuring out the problem. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage:http://xafs.org/BruceRavel Software:https://github.com/bruceravel ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
Re: [Ifeffit] Bug report: Artemis cannot re-open saved projects
On 03/19/2014 04:19 PM, Mengling Stuckman wrote: Again, the message showing in the log file is: Can't call method workspace without a package or object reference at C:/strawberry/perl/site/lib/Demeter/Fit.pm line 1550. or sometimes: Can't call method group on an undefined value at C:/strawberry/perl/site/lib/Demeter/UI/Artemis/Project.pm line 466. Are you quite sure that is the only text in the log file? Demeter first writes several lines about the environment in which Demeter is operating. The error message is almost always followed by several lines of backtrace. All of that provides context for me to understand the proximal cause of the problem. If you extract a part of the log file, then that context is lost to me. Demeter also seemed to work fine last week and only stopped working yesterday. I didn't update anything on my work computer, so I don't know what is causing the problem. Artemis worked on that computer last week and does not work this week? And you did nothing to change the computer? Something doesn't add up. Did your anti virus software update? Did your institution's system administrators perform an update? Did you install any new software? Anything? It's hard for me to understand how the behavior of the program can change simply by walking away for a few days. Without being able to watch this on one of my computers, I can only guess what the problem might be by examining the two lines of code you cite. My best guess is that something is preventing you from unpacking the project file. An .fpj file is nothing more than a zip file with a different file extension. It gets unpacked in %APPDATA%\stash (where %APPDATA% is the location of the log file). That means that you have to have permission to write files to that location. So, my best guess is that something is preventing you from writing to that space. I have no guess for what the cause of that is. So, check the permission of that folder. Try making a file in that folder by hand. Try extracting a zip file buy hand into that folder. If not that, then I'm afraid I'm out of ideas. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage:http://xafs.org/BruceRavel Software:https://github.com/bruceravel ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
Re: [Ifeffit] Bug report: Artemis cannot re-open saved projects
Thank you, Bruce, This is the complete log file: Started at 2014-03-19T14:26:09 Win7Enterprise (64-bit) Service Pack 1 Service Pack 16176012102561 PATH: C:\windows\system32;C:\windows;C:\windows\System32\Wbem;C:\windows\System32\WindowsPowerShell\v1.0\;C:\strawberry\perl\bin;C:\strawberry\perl\site\bin;C:\strawberry\c\bin;C:\strawberry1\perl\bin;C:\strawberry1\perl\site\bin;C:\strawberry1\c\bin;\\ admin.netl.doe.gov\it\Oracle11g\product\11.2.0\client_1\bin; perl version: v5.12.3 @INC: C:/strawberry/perl/site/lib C:/strawberry/perl/vendor/lib C:/strawberry/perl/lib . Can't call method workspace without a package or object reference at C:/strawberry/perl/site/lib/Demeter/Fit.pm line 1550. or this very last sentence will change to Can't call method group on an undefined value at C:/strawberry/perl/site/lib/Demeter/UI/Artemis/Project.pm line 466. if I open a different .fpj file. Because the first few lines were similar to what I saw in Athena log file when Athena is working, I didn't cite these. Thank you very much for double-checking it! I did try to check the permission of that folder by adding a file into that folder and extracting a zip file into that folder. Neither had any problem. I do have permission of that folder. I also tried to open my files in Artemis installed on several other computers in my workplace. Other computers didn't work as well. I guess it might be a problem with the operating system/software conflict in my workplace? I didn't install any other software by myself. All the other updates for antivirus or Windows 7 are automatic through workplace system management that I don't have control. I might be able to call IT support tomorrow to see if they know anything about the system that might have conflict with Demeter. Without being able to watch this on one of my computers, I can only guess what the problem might be by examining the two lines of code you cite. I am wondering how to examine the two lines of code I cited. Maybe I could talk to IT support about the code and see if there is anything they or we can do to fix that. Really appreciated for your replies! I know this is a very personalized computer problem, not related to your software, which might be beyond your duty to fix. So really thankful for your help! Mengling On Wed, Mar 19, 2014 at 4:44 PM, Bruce Ravel bra...@bnl.gov wrote: On 03/19/2014 04:19 PM, Mengling Stuckman wrote: Again, the message showing in the log file is: Can't call method workspace without a package or object reference at C:/strawberry/perl/site/lib/Demeter/Fit.pm line 1550. or sometimes: Can't call method group on an undefined value at C:/strawberry/perl/site/lib/Demeter/UI/Artemis/Project.pm line 466. Are you quite sure that is the only text in the log file? Demeter first writes several lines about the environment in which Demeter is operating. The error message is almost always followed by several lines of backtrace. All of that provides context for me to understand the proximal cause of the problem. If you extract a part of the log file, then that context is lost to me. Demeter also seemed to work fine last week and only stopped working yesterday. I didn't update anything on my work computer, so I don't know what is causing the problem. Artemis worked on that computer last week and does not work this week? And you did nothing to change the computer? Something doesn't add up. Did your anti virus software update? Did your institution's system administrators perform an update? Did you install any new software? Anything? It's hard for me to understand how the behavior of the program can change simply by walking away for a few days. Without being able to watch this on one of my computers, I can only guess what the problem might be by examining the two lines of code you cite. My best guess is that something is preventing you from unpacking the project file. An .fpj file is nothing more than a zip file with a different file extension. It gets unpacked in %APPDATA%\stash (where %APPDATA% is the location of the log file). That means that you have to have permission to write files to that location. So, my best guess is that something is preventing you from writing to that space. I have no guess for what the cause of that is. So, check the permission of that folder. Try making a file in that folder by hand. Try extracting a zip file buy hand into that folder. If not that, then I'm afraid I'm out of ideas. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage:http://xafs.org/BruceRavel Software:https://github.com/bruceravel ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
Re: [Ifeffit] Bug report: Artemis cannot re-open saved projects
Can you humor me and send me one of your .fpj files? I would like to examine its contents. B On 03/19/2014 05:36 PM, Mengling Stuckman wrote: Thank you, Bruce, This is the complete log file: Started at 2014-03-19T14:26:09 Win7Enterprise (64-bit) Service Pack 1Service Pack 16176012102561 PATH: C:\windows\system32;C:\windows;C:\windows\System32\Wbem;C:\windows\System32\WindowsPowerShell\v1.0\;C:\strawberry\perl\bin;C:\strawberry\perl\site\bin;C:\strawberry\c\bin;C:\strawberry1\perl\bin;C:\strawberry1\perl\site\bin;C:\strawberry1\c\bin;\\admin.netl.doe.gov http://admin.netl.doe.gov\it\Oracle11g\product\11.2.0\client_1\bin; perl version: v5.12.3 @INC: C:/strawberry/perl/site/lib C:/strawberry/perl/vendor/lib C:/strawberry/perl/lib . Can't call method workspace without a package or object reference at C:/strawberry/perl/site/lib/Demeter/Fit.pm line 1550. or this very last sentence will change to Can't call method group on an undefined value at C:/strawberry/perl/site/lib/Demeter/UI/Artemis/Project.pm line 466. if I open a different .fpj file. Because the first few lines were similar to what I saw in Athena log file when Athena is working, I didn't cite these. Thank you very much for double-checking it! I did try to check the permission of that folder by adding a file into that folder and extracting a zip file into that folder. Neither had any problem. I do have permission of that folder. I also tried to open my files in Artemis installed on several other computers in my workplace. Other computers didn't work as well. I guess it might be a problem with the operating system/software conflict in my workplace? I didn't install any other software by myself. All the other updates for antivirus or Windows 7 are automatic through workplace system management that I don't have control. I might be able to call IT support tomorrow to see if they know anything about the system that might have conflict with Demeter. Without being able to watch this on one of my computers, I can only guess what the problem might be by examining the two lines of code you cite. I am wondering how to examine the two lines of code I cited. Maybe I could talk to IT support about the code and see if there is anything they or we can do to fix that. Really appreciated for your replies! I know this is a very personalized computer problem, not related to your software, which might be beyond your duty to fix. So really thankful for your help! Mengling On Wed, Mar 19, 2014 at 4:44 PM, Bruce Ravel bra...@bnl.gov mailto:bra...@bnl.gov wrote: On 03/19/2014 04:19 PM, Mengling Stuckman wrote: Again, the message showing in the log file is: Can't call method workspace without a package or object reference at C:/strawberry/perl/site/lib/__Demeter/Fit.pm line 1550. or sometimes: Can't call method group on an undefined value at C:/strawberry/perl/site/lib/__Demeter/UI/Artemis/Project.pm line 466. Are you quite sure that is the only text in the log file? Demeter first writes several lines about the environment in which Demeter is operating. The error message is almost always followed by several lines of backtrace. All of that provides context for me to understand the proximal cause of the problem. If you extract a part of the log file, then that context is lost to me. Demeter also seemed to work fine last week and only stopped working yesterday. I didn't update anything on my work computer, so I don't know what is causing the problem. Artemis worked on that computer last week and does not work this week? And you did nothing to change the computer? Something doesn't add up. Did your anti virus software update? Did your institution's system administrators perform an update? Did you install any new software? Anything? It's hard for me to understand how the behavior of the program can change simply by walking away for a few days. Without being able to watch this on one of my computers, I can only guess what the problem might be by examining the two lines of code you cite. My best guess is that something is preventing you from unpacking the project file. An .fpj file is nothing more than a zip file with a different file extension. It gets unpacked in %APPDATA%\stash (where %APPDATA% is the location of the log file). That means that you have to have permission to write files to that location. So, my best guess is that something is preventing you from writing to that space. I have no guess for what the cause of that is. So, check the permission of that folder. Try making a file in that folder by hand. Try extracting a zip file buy hand into that folder. If not that, then I'm afraid I'm out of ideas. B -- Bruce Ravel --__-- bra...@bnl.gov mailto:bra...@bnl.gov
