[Ifeffit] feff question

2010-10-27 Thread George Sterbinsky
Hi, I am hoping someone can explain to me how to run Feff 7 on a mac (OSX version 10.5.8) starting from the feff702.f file. Thank you, George ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov

Re: [Ifeffit] feff question

2010-10-27 Thread George Sterbinsky
On Oct 27, 2010, at 12:43 PM, George Sterbinsky wrote: Hi, I am hoping someone can explain to me how to run Feff 7 on a mac (OSX version 10.5.8) starting from the feff702.f file. Thank you, George ___ Ifeffit mailing list Ifeffit

Re: [Ifeffit] feff question

2010-11-02 Thread George Sterbinsky
On Wed, Oct 27, 2010 at 12:43 PM, George Sterbinsky georgesterbin...@u.northwestern.edu wrote: Hi, I am hoping someone can explain to me how to run Feff 7 on a mac (OSX version 10.5.8) starting from the feff702.f file. Thank you, George

Re: [Ifeffit] feff question

2010-11-03 Thread George Sterbinsky
Is it possible that I need to download and install the gfortran-4.2.3.dmg file in addition to gfortran-42-5577.pkg file? Any suggestions as to what to try would be appreciated. thanks, George On Tue, Nov 2, 2010 at 1:59 PM, George Sterbinsky georgesterbin...@u.northwestern.edu wrote: Matt

Re: [Ifeffit] feff question

2010-11-03 Thread George Sterbinsky
? Is it possible that gfortran-42-5577.pkg placed it somewhere else? George On Wed, Nov 3, 2010 at 3:12 PM, Matt Newville newvi...@cars.uchicago.eduwrote: Hi George, On Wed, Nov 3, 2010 at 2:07 PM, George Sterbinsky georgesterbin...@u.northwestern.edu wrote: Is it possible that I need

Re: [Ifeffit] feff question

2010-11-04 Thread George Sterbinsky
wrote: Hi George, On Wed, Nov 3, 2010 at 2:37 PM, George Sterbinsky georgesterbin...@u.northwestern.edu wrote: I've also noticed that there is not a file or directory called gfortran in '/usr/local/bin'. This is what made me think I may also need to install the gfortran

[Ifeffit] iXAFS

2010-11-29 Thread George Sterbinsky
Hi, I am wondering what is the best way to uninstall iXAFS version 2.1.1 for Leopard before installing the new version. Is it sufficient to just drag iXAFS.app to the trash or is there a better way to make sure everything gets removed? Thank you, George

Re: [Ifeffit] iXAFS

2010-11-29 Thread George Sterbinsky
, George On Mon, Nov 29, 2010 at 10:37 AM, Jeff Terry ter...@iit.edu wrote: That should work fine. Alternately, you the new version should overwrite the old if you drag it to the Applications folder. Sent from my iPhone On Nov 29, 2010, at 9:05 AM, George Sterbinsky georgesterbin

Re: [Ifeffit] Athena Artemis

2011-05-12 Thread George Sterbinsky
Also, for anyone who just wants to see the difference in the two data sets I've attached a figure. George On Thu, May 12, 2011 at 1:23 PM, George Sterbinsky georgesterbin...@u.northwestern.edu wrote: Hello, I've noticed an odd behavior in Athena and Artemis and I was hoping someone could

Re: [Ifeffit] more bugs in atoms?

2011-05-12 Thread George Sterbinsky
Hi Lisa, I'm not very familiar with PbSO4, so I'm not sure if I can help, but your email immediately brought some questions to mind. First, did you import the same information into atoms and the crystal structure program? The way you worded your message made me think that the crystal structure

Re: [Ifeffit] more bugs in atoms?

2011-05-26 Thread George Sterbinsky
Hi Lisa, Let me just mention one situation I have encountered using atoms, and how I resolved it. I am not sure if this is the result of a bug or not, but perhaps you can try applying the approach I took to your own situation and see if it can resolve your problem. The issue I encountered was

Re: [Ifeffit] more bugs in atoms?

2011-05-27 Thread George Sterbinsky
by somebody else. Or there is a mistake in the paper. Anyway. Thanks for sharing this idea. Lisa Date: Thu, 26 May 2011 11:41:08 -0400 From: George Sterbinsky georgesterbin...@u.northwestern.edu To: XAFS Analysis using Ifeffit ifeffit@millenia.cars.aps.anl.gov Subject: Re: [Ifeffit

[Ifeffit] Artemis fitting k-weight

2011-09-16 Thread George Sterbinsky
Hello, When fitting data in Artemis with the other k weight box checked and the kw = 1, 2, or 3 boxes unchecked, I find that the log file lists k-weight = 1, kw, where kw is the value I entered into the other k weight text box. If I choose 0 as the other k weight, then the log file lists k-weight

Re: [Ifeffit] Artemis fitting k-weight

2011-09-20 Thread George Sterbinsky
Thanks Bruce. George On Tue, Sep 20, 2011 at 3:48 PM, Bruce Ravel bra...@bnl.gov wrote: On Tuesday, September 20, 2011 03:44:55 pm Bruce Ravel wrote: I have not explored this issue in the new Artemis, but if is exists it will be fixed before the next Demeter release. FWIW, I tested this

[Ifeffit] number of independent points

2011-10-07 Thread George Sterbinsky
Hello, I am wondering what values Artemis/feffit use for kmax and kmin when calculating the number of independent points (Nidp) for a fit done in R-space, where according the feffit document, Nidp = { [2*(kmax - kmin)*(Rmax-Rmin) / pi] + 2}, and kmax and kmin define the fitting range. I have

[Ifeffit] number of independent points

2011-10-10 Thread George Sterbinsky
given for independent points in the log fie? Thank you, George On Fri, Oct 7, 2011 at 1:04 PM, George Sterbinsky georgesterbin...@u.northwestern.edu wrote: Hello, I am wondering what values Artemis/feffit use for kmax and kmin when calculating the number of independent points (Nidp) for a fit

Re: [Ifeffit] number of independent points

2011-10-10 Thread George Sterbinsky
Sorry, the log file is from Artemis, not Athena... On Mon, Oct 10, 2011 at 10:35 AM, George Sterbinsky georgesterbin...@u.northwestern.edu wrote: Hello, Since I haven't received a response to my previous question, I just wanted to make sure I asked it clearly. To elaborate, I am attaching

Re: [Ifeffit] number of independent points

2011-10-10 Thread George Sterbinsky
Bruce, Matt, and Jeremy, Thank you for explaining this. Your responses are much appreciated. George On Mon, Oct 10, 2011 at 11:35 AM, Bruce Ravel bra...@bnl.gov wrote: On Monday, October 10, 2011 10:35:12 am George Sterbinsky wrote: Since I haven't received a response to my previous

Re: [Ifeffit] Sudden Difficulty with Importing Data into Athena

2012-02-02 Thread George Sterbinsky
Tony, Have you checked to see if the directories referenced in your error messages actually exist? I am running iXAFS (according to the about iXAFS menu it is version 2 (2.2)) on mac OSX 10.5.8. One thing I noticed is that the directory referenced in your error message,

Re: [Ifeffit] Sudden Difficulty with Importing Data into Athena

2012-02-03 Thread George Sterbinsky
Tony, You ask are there hidden files I should remove as well that aren't removed...? I do find a Perl folder in my Library folder. I'm not sure if this was installed by iXAFS or affects iXAFS... George On Thu, Feb 2, 2012 at 8:18 PM, Tony Kelly tkell...@gmail.com wrote: This will make me

[Ifeffit] ifeffit on Lion

2012-08-15 Thread George Sterbinsky
Hi list members, I am attempting to install ifeffit on mac book running Lion (10.7.4). I have downloaded and installed xcode and gfortran. I downloaded the iffeffit package from github. I then cd into .../Downloads/newville-ifeffit-30644e and run sudo ./PGPLOT_install I get the following error:

[Ifeffit] Demeter on windows 8

2012-11-13 Thread George Sterbinsky
Hello, Has anyone been able to install Demeter on windows8? When I try to open Athena I get the message in attached screen shot. I tried reinstalling as suggested by the message, which did not help. One thing I noticed however was that Perl was not removed by the built in Demeter uninstaller.

Re: [Ifeffit] Demeter on windows 8

2012-11-13 Thread George Sterbinsky
Hi All, Athena seems to be running now. It may have just been necessary to reboot the system, though I also reinstalled again, so I'm not certain exactly what fixed it. Thank you, George On Tue, Nov 13, 2012 at 5:58 PM, George Sterbinsky georgesterbin...@u.northwestern.edu wrote: Hello

[Ifeffit] merging data

2012-12-06 Thread George Sterbinsky
Hello, I am observing some behavior in (D)Athena that I do not understand, and I was hoping someone could explain it to me. I have attached a project file to illustrate my question. The first two groups in the file have been normalized such that mu(E) and norm(E) are identical. I then merged

Re: [Ifeffit] merging data

2012-12-14 Thread George Sterbinsky
do what you want. The solution is to go find the find the right tool for the job. Or, if it doesn't exist, write it yourself. B On Thursday, December 06, 2012 10:59:55 AM George Sterbinsky wrote: Hello, I am observing some behavior in (D)Athena that I do not understand, and I

[Ifeffit] Merging data in Athena

2013-02-26 Thread George Sterbinsky
I am writing to make you aware of what I believe to be a bug in (D)Athena. To demonstrate the problem, I have attached a project file containing two groups. Both groups have the same energy range but were measured with slightly different point spacings. Attempting to merge the two groups results

Re: [Ifeffit] Merging data in Athena

2013-02-27 Thread George Sterbinsky
or have you reinterpolate one spectrum? Chris Patridge Christopher J. Patridge, PhD NRC Post Doctoral Research Associate Naval Research Laboratory Washington, DC 20375 Cell: 315-529-0501 On 2/26/2013 6:55 PM, George Sterbinsky wrote: I am writing

Re: [Ifeffit] Merging data in Athena

2013-02-27 Thread George Sterbinsky
Thanks Bruce On Wed, Feb 27, 2013 at 8:28 AM, Bruce Ravel bra...@bnl.gov wrote: On Tuesday, February 26, 2013 06:55:21 PM George Sterbinsky wrote: I am writing to make you aware of what I believe to be a bug in (D)Athena. To demonstrate the problem, I have attached a project file

[Ifeffit] Shifted data in Athena

2013-03-08 Thread George Sterbinsky
Hello, I have attached an (D)Athena project with containing two groups, imported as a primary data set and a reference. The groups were therefore imported on the same energy grid. However, when plotted, the energy values of the data points for the two groups are clearly shifted with respect to

Re: [Ifeffit] normalization methods

2013-05-15 Thread George Sterbinsky
The question of whether it is appropriate to use flattened data for quantitative analysis is something I've been thinking about a lot recently. In my specific case, I am analyzing XMCD data at the Co L-edge. To obtain the XMCD, I measure XAS with total electron yield detection using a ~70% left or

Re: [Ifeffit] normalization methods

2013-05-15 Thread George Sterbinsky
of the MCD peaks will be at least a little corrupted even if the pre- and post-edge spectra are taken into account. I don't know what to do about this. Did you try asking Elke? mam On 5/15/2013 11:52 AM, George Sterbinsky wrote: Hi Matthew, On Wed, May 15, 2013 at 1:20 PM, Matthew

Re: [Ifeffit] Athena fix edge step

2013-09-24 Thread George Sterbinsky
Hi Bruce, That seems to do the trick for me as well. Thanks! George On Tue, Sep 24, 2013 at 5:44 PM, Bruce Ravel bra...@bnl.gov wrote: On 09/20/2013 11:53 AM, George Sterbinsky wrote: Hello, I am writing to report what I believe to be a bug in Athena. I am using Demeter 0.9.18

[Ifeffit] Renaming groups in Athena

2013-10-10 Thread George Sterbinsky
Hello, I am writing to report what I believe to be a bug in Athena. In the attached project, there are two groups, a main group and a reference group. Changing the name of the first group does not change the name of the reference group. Changing the name of the reference group separately doesn't

[Ifeffit] Athena crash report

2013-10-27 Thread George Sterbinsky
Hello, I am writing to report a crash of Athena 0.9.18 running on Ubuntu 12.04 as a virtual machine. The terminal output is below. Let me know if I can provide any additional information. Thanks, George parallels@parallels-Parallels-Virtual-Platform:~$ dathena Attribute (bkg_nor1) does not pass

Re: [Ifeffit] Athena crash report

2013-10-28 Thread George Sterbinsky
...@bnl.gov wrote: On 10/27/2013 02:43 PM, George Sterbinsky wrote: Hello, I am writing to report a crash of Athena 0.9.18 running on Ubuntu 12.04 as a virtual machine. The terminal output is below. Let me know if I can provide any additional information. At the command line, type denv

Re: [Ifeffit] Athena crash report

2013-10-28 Thread George Sterbinsky
Hi Bruce, I checked the demeter.ini file and nor1 is set to 150. In fact, I don't see any values ending in a trailing decimal point in this file. I have found however that I can reliably crash Athena by opening up a project, and trying to manually type a value (seemingly any value) for the start

Re: [Ifeffit] Header information data Lepidocrocite

2013-11-05 Thread George Sterbinsky
Hi Florian, The acronyms stand for Scan Region Boundary Scan Region Step Size Seconds Per Point Best, George On Tue, Nov 5, 2013 at 6:51 AM, daltonabd...@gmail.com daltonabd...@gmail.com wrote: Hello, Florian. Welcome to the list! I watched Bruce's video a while ago and I can not

Re: [Ifeffit] Demeter on Mac OS X via Macports

2014-01-25 Thread George Sterbinsky
Hi Frank, I installed Athena on OSX 10.8.5 using Macports. The error given below prints to the terminal when I run Athena, and Athena does not generate any plots. If there is any further information I can provide that would be helpful, let me know. Graphics::GnuplotIF : cannot find environment

[Ifeffit] Peaks in MCA spectra

2014-03-31 Thread George Sterbinsky
Hello, I am writing with a general XAS question. It does not necessarily pertain to Ifeffit, however, I think the topic is something some, maybe most, list members will be knowledgeable about. So it seems like this list is a good place to post this question. On to the question. I have attached a

Re: [Ifeffit] Peaks in MCA spectra

2014-03-31 Thread George Sterbinsky
with the fit to get rid of the shifting to left of the peaks. Thanks, George I admit that I've never done soft X-ray fluorescence, so my ideas come from hard X-ray experience, which may not totally apply. mam On 3/31/2014 3:01 PM, George Sterbinsky wrote: Hello, I am writing

Re: [Ifeffit] Peaks in MCA spectra

2014-04-01 Thread George Sterbinsky
by an inaccurate attempt at reading the energy scale. Also, I somehow didn't read correctly the branching ratio from Hephaestus. mam On 3/31/2014 8:57 PM, George Sterbinsky wrote: Hi Matt, Thanks for your reply. Please see below. On Mon, Mar 31, 2014 at 8:10 PM, Matt Newville newvi

Re: [Ifeffit] Peaks in MCA spectra

2014-04-02 Thread George Sterbinsky
. Newville, or whoever wrote the program. mam On 4/1/2014 9:56 AM, George Sterbinsky wrote: Hi Matthew, Hephaestus shows the strength of the Ll emission to be about 10% of the La2 emission. When fitting the spectrum as a sum of Gaussians, I find that the area of of the Gaussian used

[Ifeffit] Demeter: Problem closing communication to gnuplot

2014-04-11 Thread George Sterbinsky
Hello, I am trying to learn to use Demeter following The Demeter Programmer Guide. When I attempt to run the first example script in the importing data section I get the following error message: Graphics::GnuplotIF (object 1): problem closing communication to gnuplot I also see the plot window

Re: [Ifeffit] Demeter: Problem closing communication to gnuplot

2014-04-12 Thread George Sterbinsky
put in a pause. And you get to look at the plot before it vanishes! B On 04/11/2014 06:45 PM, George Sterbinsky wrote: Hello, I am trying to learn to use Demeter following The Demeter Programmer Guide. When I attempt to run the first example script in the importing data section I get

Re: [Ifeffit] Rendering of windows in Artemis and transferring paths from feff calculation

2014-04-18 Thread George Sterbinsky
Hi Bruce and Alison, I am able to confirm the behavior reported by Alison (both bigger and lesser problems) on OSX 10.8.5. Pressing the transfer displayed path button causes Artemis to crash and the message below to print to the terminal. 2014-04-18 11:18:26.309 perl5.16[1309:707] *** WARNING:

[Ifeffit] Athena crash report

2014-07-04 Thread George Sterbinsky
Hello, I am running Athena 0.9.20 on OSX 10.8.5. Selecting the difference spectra tool from the drop-down menu causes Athena to crash and the following message to print to the terminal. Usage: Wx::ComboBox::GetClientData(THIS, n) at

[Ifeffit] Artemis on Yosemite

2015-03-25 Thread George Sterbinsky
Hello, When I attempt to open Artemis on OSX Yosemite (10.10.2) the error message copied below prints to the terminal. The initial image that indicates Artemis is opening does appear, although Artemis fails to open. Athena and Hephaestus open without error. Any suggestions as to how this could be

Re: [Ifeffit] Energy shift after deglitch

2015-08-11 Thread George Sterbinsky
this fellow's issue...? http://millenia.cars.aps.anl.gov/pipermail/ifeffit/2015-May/012496.html Of course, the Mac package is a fair bit behind at this point. B On 08/06/2015 06:10 PM, George Sterbinsky wrote: Hello, I am writing to report a bug in Athena running on OSX 10.10.4. Here

[Ifeffit] Energy shift after deglitch

2015-08-06 Thread George Sterbinsky
Hello, I am writing to report a bug in Athena running on OSX 10.10.4. Here are the steps to reproduce the problem. I'm not sure that all steps are necessary. 1. Open Athena and import the attached project, which contains two groups that are both marked. 2. Change plot range to plot from -30 to

Re: [Ifeffit] MacPorts now contains Demeter 0.9.22 (and requires Perl 5.22)

2015-08-14 Thread George Sterbinsky
people's changes. Joe -- *From:* George Sterbinsky georgesterbin...@u.northwestern.edu *Sent:* Tuesday, August 11, 2015 8:27 PM *To:* XAFS Analysis using Ifeffit *Subject:* Re: [Ifeffit] MacPorts now contains Demeter 0.9.22 (and requires Perl 5.22) Hi Joe

Re: [Ifeffit] MacPorts now contains Demeter 0.9.22 (and requires Perl 5.22)

2015-08-11 Thread George Sterbinsky
On 08/06/2015 06:10 PM, George Sterbinsky wrote: Hello, I am writing to report a bug in Athena running on OSX 10.10.4. Here are the steps to reproduce the problem. I'm not sure that all steps are necessary. 1. Open Athena and import the attached project, which contains two groups

Re: [Ifeffit] Demeter under El Capitan

2015-11-12 Thread George Sterbinsky
On Thu, Nov 12, 2015 at 8:37 PM, Matt Newville <newvi...@cars.uchicago.edu> wrote: > Hi George, > > > > On Thu, Nov 12, 2015 at 7:59 PM, George Sterbinsky < > georgesterbin...@u.northwestern.edu> wrote: > >> Hi Matt, >> >> I am just guessing here, but

Re: [Ifeffit] Demeter under El Capitan

2015-11-12 Thread George Sterbinsky
Hi Matt, I am just guessing here, but Zack and Manuel both mention installing XQuartz, whereas you mention installing xorg-server. While Demeter should work with either, perhaps on the new OS there is a problem installing Demeter with xorg-server and one has to go with xQuartz. Have you tried

Re: [Ifeffit] No plot window in Athena/Demeter on Mac OS X Yosemite

2015-09-10 Thread George Sterbinsky
Hi Remi, I noticed a typo in the commands you used. "selfupdate" should be one word, not two. Perhaps this was just a typo in your email, but if not then you may want to try running it again. Also, I noticed that the instructions at the Demeter website say to log out and log back in after

Re: [Ifeffit] No plot window in Athena/Demeter on Mac OS X Yosemite

2015-09-22 Thread George Sterbinsky
In the Athena preferences menu, the "gnuplot-->terminal" parameter is set to "x11" on my system. If yours is set to something else you might try changing it to x11. George On Tue, Sep 22, 2015 at 4:18 PM, Bruce Ravel wrote: > On 09/22/2015 05:03 PM, Raimundo Lora Serrano wrote:

Re: [Ifeffit] No plot window in Athena/Demeter on Mac OS X Yosemite

2015-09-22 Thread George Sterbinsky
I've found that if the terminal value is set to wxt, it is reset to qt upon restarting Athena, and Athena will not plot. This does not happen if the terminal value is set to x11 or aqua. George On Tue, Sep 22, 2015 at 9:32 PM, Matt Newville wrote: > Sorry for not

Re: [Ifeffit] No plot window in Athena/Demeter on Mac OS X Yosemite

2015-09-22 Thread George Sterbinsky
Hi All, The result I get is /private/tmp/com.apple.launchd.a2i2wnuP2l/org.macosforge.xquartz:0 and Athena is working fine on my system. George On Tue, Sep 22, 2015 at 6:50 AM, Alison Tebo wrote: > Hi Raimundo (and Rémi), > > I'm not a pro here but, have you installed

Re: [Ifeffit] Athena crash on mac on import

2016-07-05 Thread George Sterbinsky
Demeter::UI::Artemis::__ANON__(Wx::Frame=HASH(0x7fdb96c547c0), Wx::CommandEvent=SCALAR(0x7fdb96c576a0)) called at /opt/local/bin/Artemis line 47 eval {...} called at /opt/local/bin/Artemis line 47 On Fri, Jul 1, 2016 at 4:26 PM, Bruce Ravel <bra...@bnl.gov> wrote: > > That was the right

Re: [Ifeffit] Athena crash on mac on import

2016-07-08 Thread George Sterbinsky
vel/Demeter/Fit.pm, > near line 1263 (as the traceback indicates) you will find this: > > ## correct for change in energy-dependent normalization > delete $r_attributes->{bkg_fnorm}; > > add > > delete $r_attributes->{bkg_funnorm}; > > > B >

[Ifeffit] Athena crash on mac on import

2016-07-01 Thread George Sterbinsky
Hello, Athena crashes upon import of the attached project file. I am using the latest release of Athena for mac (0.9.22) on OSX 10.10.5. I am able to open the file on windows. The message that is printed to the terminal when Athena crashes is pasted below. Please let me know if any further

Re: [Ifeffit] Athena crash on mac on import

2016-07-01 Thread George Sterbinsky
Hi Bruce, Thanks for providing a fix. The Prj.pm file on my system does not look exactly like what you describe. Lines 260 to 268 looked like this: next if any { $k eq $_ } qw( bindtag deg_tol denominator detectors en_str file frozen line mu_str numerator old_group original_label peak

[Ifeffit] Artemis crash on import

2016-10-13 Thread George Sterbinsky
Hello, I am using Demeter on Mac OS X 10.11.6. I recently updated Demeter to version 0.9.25 using the command "sudo port upgrade demeter". In Artemis, choosing the menu item "open project or data" causes Artemis to crash. I've pasted the information printed to the terminal below. This includes

Re: [Ifeffit] error when fitting in Artemis

2017-01-06 Thread George Sterbinsky
m or indicates a fix. Thanks again, George On Wed, Jan 4, 2017 at 10:05 AM, Bruce Ravel <bra...@bnl.gov> wrote: > On 12/22/2016 12:11 PM, George Sterbinsky wrote: > >> I have attached an Artemis project. Upon opening the project, and >> clicking the fit button the

Re: [Ifeffit] Hephaestus ion chamber absorption

2017-05-30 Thread George Sterbinsky
Thank you Matt. George On Mon, May 29, 2017 at 10:02 PM, Matt Newville <newvi...@cars.uchicago.edu> wrote: > Hi George, > > On Mon, May 29, 2017 at 5:57 PM, George Sterbinsky <GeorgeSterbinsky@u. > northwestern.edu> wrote: > >> Hello, >> >> Can a

[Ifeffit] Hephaestus ion chamber absorption

2017-05-29 Thread George Sterbinsky
Hello, Can anyone explain why the values given by the ion chamber utility in Hephaestus differ from those given for a 10 cm He filled ion chamber in figure 3.14 of Grant Bunker's Intro to XAFS book at high energy? For instance, figure 3.14 indicates an absorption fraction of ~3E-7 at 40 keV,

Re: [Ifeffit] Installation problems on MacOS catalina, macports

2020-01-25 Thread George Sterbinsky
Thanks for following up Ricardo. I find the same issue when doing a fresh install of macports and demeter on MacOS Mojave (10.14.6), so it seems the issue is not unique to Catalina. George On Sat, Jan 25, 2020 at 12:23 PM Ricardo Faccio wrote: > Dear all > > This is just a comment how to

Re: [Ifeffit] color of fonts in demeter

2020-01-28 Thread George Sterbinsky
Hi Ricardo, Are you using dark mode? If you turn it off, does that fix the problem? George On Mon, Jan 27, 2020 at 9:36 AM Ricardo Faccio wrote: > Dear all > > After installing Demeter in MacOS I am having some problems related to > the color of fonts and background. Since they look identical

[Ifeffit] Artemis crash upon empirical standard import.

2020-04-13 Thread George Sterbinsky
Hello, I am trying to import an empirical standard (.es file created in Athena) into Artemis. Upon import, Artemis crashes. This occurs with both the latest mac and windows releases (0.9.25 on mac and 0.9.26 on windows). I have attached an Athena project file containing the data used to generate

Re: [Ifeffit] Larch 0.9.47

2020-04-17 Thread George Sterbinsky
Hi All, I am trying to upgrade larch from 0.9.45. Neither "conda update --all" nor "pip install xraylarch" are updating to 0.9.47. Is a complete reinstall of anaconda my only option? Thank you, George On Tue, Mar 3, 2020 at 11:22 AM Matt Newville wrote: > Hi Garret, > > > On Tue, Mar 3, 2020

[Ifeffit] errors in bond lengths

2020-04-11 Thread George Sterbinsky
Hello, As is well known, EXAFS is more accurate at determining relative changes in bond lengths than absolute changes in bond lengths due to cancelation of systematic errors in relative comparisons. When comparing the relative changes in bond lengths determined from EXAFS fits, as one might for a

Re: [Ifeffit] errors in bond lengths

2020-04-12 Thread George Sterbinsky
"yeah, that could work" and also "maybe not perfectly". > > > > But, if I'm reading this PRL correctly, it looks like they use the > > log-ratio method to compare sigma2 and R of spectra at the same > > temperature but with different isotopes. Th

[Ifeffit] unable to export xdi file in xas viewer

2020-04-20 Thread George Sterbinsky
Hello, When attempting to export an xdi file for a pre-edge peak fit in XAS viewer, the error message below prints to the terminal and the xdi file is not generated. I can provide the project file and instructions for generating the error message if that would be helpful. Thank you, George

Re: [Ifeffit] Larch 0.9.47

2020-04-18 Thread George Sterbinsky
Hi Matt, Thanks, that worked. I got an error that said something about 'asteval' on my first try, so I also deleted that package. George On Sat, Apr 18, 2020 at 11:24 AM Matt Newville wrote: > Hi George, > > Sorry for the trouble. I think a fresh install is not the only option, > but it

[Ifeffit] Fe 4+ reference

2020-04-05 Thread George Sterbinsky
Hello, Does anyone have Fe K-edge XANES from an Fe4+ reference or sample (for example SrFeO3) that they can share? Thank you, George ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit

Re: [Ifeffit] unable to export xdi file in xas viewer

2020-04-29 Thread George Sterbinsky
be saying that the parameter > uncertainties weren't calculated correctly. It probably should not even be > trying to estimate the uncertainty in the model. I believe it should be > fixed in git master for larch, and I'll see about looking for this in lmfit > too. > > On

Re: [Ifeffit] unable to export xdi file in xas viewer

2020-04-30 Thread George Sterbinsky
ewer. > > > > On Wed, Apr 29, 2020 at 10:31 AM George Sterbinsky < > georgesterbin...@u.northwestern.edu> wrote: > >> Hi Matt and all, >> >> Unfortunately, after a clean install of larch following the source >> installation instructions, I am not able

Re: [Ifeffit] unable to export xdi file in xas viewer

2020-05-04 Thread George Sterbinsky
Hi Matt, Thanks for the explanation, I now see what you meant. George On Fri, May 1, 2020 at 6:28 PM Matt Newville wrote: > Hi George, > > > On Thu, Apr 30, 2020 at 11:39 PM George Sterbinsky < > georgesterbin...@u.northwestern.edu> wrote: > >> Hi Matt, >

[Ifeffit] Change in fixed baseline after fit in XAS Viewer

2020-05-04 Thread George Sterbinsky
Hello, I have observed changes in fixed parameters while running a pre-edge peak fit in XAS Viewer. I first run a baseline fit. This provides a good match to the data in the baseline fitting region. I would like to subtract the baseline from the data and then numerically integrate the data. In

Re: [Ifeffit] Artemis crash upon empirical standard import.

2020-05-21 Thread George Sterbinsky
u finally solved this problem? I´m having the same situation when > trying to import an empirical standard. > > Thank you, > > Mismel. > > > El lun., 13 de abr. de 2020 a la(s) 11:04, George Sterbinsky ( > georgesterbin...@u.northwestern.edu) escribió: > >> He