Re: [ITK-dev] Problems with WikiExamples Remote Module after recent checkin

2014-11-19 Thread Matt McCormick
Hi Bill, Thanks for the note. I'll have to take a look. It may be that if one part of the Wiki Examples is using COMPONENTS, either all or none is required... Thanks, Matt On Wed, Nov 19, 2014 at 10:57 AM, Bill Lorensen wrote: > Matt, > This change: > http://open.cdash.org/viewChanges.php?pro

Re: [ITK-dev] Aloha ITK Developers!

2014-11-19 Thread Matt McCormick
Dear Kent, Best wishes on your new adventure -- you will be missed! Thanks for being an outstanding member of the community. Matt On Wed, Nov 19, 2014 at 4:42 PM, Bill Lorensen wrote: > +1 > > > On Wed, Nov 19, 2014 at 4:40 PM, Nicholas Tustison > wrote: >> Kent, that’s terrible (for us)! No

Re: [ITK-dev] Problems with WikiExamples Remote Module after recent checkin

2014-11-20 Thread Matt McCormick
y normal ITK build which has several remote modules turned fails to >> build >> Linking CXX shared library ../../../../lib/libITKVtkGlue-4.7.dylib >> ld: library not found for -lvtkCommonCore >> collect2: ld returned 1 exit status >> make[2]: *** [lib/libITKVtkGlue-4.7.1.dylib

Re: [ITK-dev] Problems with WikiExamples Remote Module after recent checkin

2014-11-21 Thread Matt McCormick
do i/o no longer run. >> >> >> On Fri, Nov 21, 2014 at 12:34 AM, Matt McCormick >> wrote: >>> Hi Bill, >>> >>> That patch is required to prevent link errors with static builds and >>> multiple calls to COMPONENTS -- it should not be reve

Re: [ITK-dev] Redesigning the way examples are added

2014-11-24 Thread Matt McCormick
Hi Brad, Yes, I think that is a great idea. It would probably be a list of explicit names and globs for ease of implementation, but I'll see what can be done. Thanks, Matt On Mon, Nov 24, 2014 at 8:47 AM, Bradley Lowekamp wrote: > Matt, > > It looks like you started some awesome work to get mo

Re: [ITK-dev] Override keyword requirements: New transform compilation errors.

2014-11-24 Thread Matt McCormick
Brad, It is a good point that we should a C++11 build for the change sets. We are updating the testing infrastructure, and we will make sure we have at least one compiler building with C++11. Thanks, Matt On Mon, Nov 24, 2014 at 9:26 AM, Bradley Lowekamp wrote: > Hans, > > Great, thanks for

[ITK-dev] ITK 4.7 Release Candidates Approach

2014-11-24 Thread Matt McCormick
Hi, The ITK 4.7 release candidates are scheduled to start week. Please have reviewed, green build patches merged by the end of the week. Thanks, Matt ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/ope

[ITK-dev] ITK Software Guide Printing

2014-11-24 Thread Matt McCormick
Hi, We are scheduled to have the ITK Software Guide sent to the printers next week so the physical books will be available for the 4.7 release. Please have any changes reviewed in Gerrit over the next week. Thanks, Matt ___ Powered by www.kitware.com V

Re: [ITK-dev] [ITK] ITK Software Guide Printing

2014-11-25 Thread Matt McCormick
opher Mullins have time to work on this before printing, or do > you need some help > to fix the remaining warnings ? > > Michka > > On 24 Nov 2014, at 22:26, Matt McCormick wrote: > > Hi, > > We are scheduled to have the ITK Software Guide sent to the printers > ne

Re: [ITK-dev] [ITK-users] Problem reading a big nifti volume.

2014-11-25 Thread Matt McCormick
Hi Fotis, Thanks for helping to improve large nifti file support. The file can be uploaded on midas3.kitware.com. Sign up for the ITK community [1], let the list know the name of your account, and myself or one of the other administrators will add upload priviledges to the account. The file cou

Re: [ITK-dev] [ITK-users] Problem reading a big nifti volume.

2014-11-26 Thread Matt McCormick
Thanks! Added. On Wed, Nov 26, 2014 at 9:21 AM, Fotis Drakopoulos wrote: > Hi, > I signed up for the ITK community on midas. > > Thanks, > Fotis Drakopoulos > > On Tue, Nov 25, 2014 at 10:44 PM, Matt McCormick > wrote: >> >> Hi Fotis, >> >> Thanks

[ITK-dev] ITK Development Confab

2014-12-04 Thread Matt McCormick
Tomorrow we will to share, discuss, design, and learn with your fellow ITK community members at the ITK Development Confab. Bring your ITK related topic of interest. We will also discuss the 4.7 Software Guide printing and 4.7 release candidate. Details: Friday, 11:00 AM Eastern USA time: ht

[ITK-dev] [ANNOUNCE] ITK 4.7 Release Candidate 1 has been tagged!

2014-12-08 Thread Matt McCormick
On behalf of the Insight Toolkit community, we are proud to announce that ITK 4.7.0 release candidate 1 has been tagged and is available for testing! To obtain the source code, git clone http://itk.org/ITK.git cd ITK git checkout -q --detach v4.7rc01 For more details, please see the Git d

Re: [ITK-dev] [ITK] [ANNOUNCE] ITK 4.7 Release Candidate 1 has been tagged!

2014-12-09 Thread Matt McCormick
les.html > [2] http://www.itk.org/Doxygen/html/classitk_1_1ResampleImageFilter.html > > On Dec 8, 2014, at 11:44 PM, Matt McCormick > wrote: > >> On behalf of the Insight Toolkit community, we are proud to announce >> that ITK 4.7.0 release candidate 1 has been tagged and is available

Re: [ITK-dev] Dashboard systems now stable.

2014-12-09 Thread Matt McCormick
Hi Brad, Excellent, thanks for the note! The builds have been moved. Matt On Tue, Dec 9, 2014 at 9:37 AM, Bradley Lowekamp wrote: > Matt, > > These builds should be considered for moving to the Expected Nightly Section: > > http://open.cdash.org/buildSummary.php?buildid=3604304 > http://open.c

Re: [ITK-dev] [ITK] New clang warnings: reserved-id-macro

2014-12-11 Thread Matt McCormick
Hi Sean, Thanks for working on this! The KWStyle configuration can be updated here: http://itk.org/gitweb?p=ITK.git;a=blob;f=Utilities/KWStyle/ITK.kws.xml;h=34569cf363cf65a2f7936d564d09793dca95006f;hb=HEAD#l14 Thanks, Matt On Thu, Dec 11, 2014 at 3:15 PM, Sean McBride wrote: > On Thu, 11 D

Re: [ITK-dev] New clang warnings: reserved-id-macro

2014-12-12 Thread Matt McCormick
Personally, I don't have any strong preference. How about itkFooBar_h , since it seems to be the most compatible. Thanks, Matt On Fri, Dec 12, 2014 at 9:22 AM, Bradley Lowekamp wrote: > And all the remote modules should be updated as well... > > > On Dec 11, 2014, at 3:30 PM, Sean McBride

Re: [ITK-dev] New clang warnings: reserved-id-macro

2014-12-16 Thread Matt McCormick
On Mon, Dec 15, 2014 at 4:47 PM, Sean McBride wrote: > > On Mon, 15 Dec 2014 09:08:43 -0500, Bradley Lowekamp said: > > >Thanks for taking this on. > > > >I believe at the TCON on friday we agreed with Matt's suggestion: > > > >itkFooBar_h > > > >I hope that there will be a fairly robust command l

Re: [ITK-dev] ITK 4.7 Release Candidate 2 has been tagged!

2014-12-17 Thread Matt McCormick
his way, you have to tell ctest how many > processes to test at once... > > Bottom line: > 4.7rc02 looks good to me, go for it! > > > Cheers, > David C. > > > > On Tue, Dec 16, 2014 at 2:42 AM, Matt McCormick > wrote: > > On behalf of the Insight Toolkit community, w

Re: [ITK-dev] ITKApps and 4.7rc02

2014-12-18 Thread Matt McCormick
Hi Bill, Thanks for testing. Yes, this patch fixes the issue [1]. I will make sure it is in the release. Thanks, Matt [1] http://review.source.kitware.com/#/c/18531/ On Thu, Dec 18, 2014 at 8:08 AM, Bill Lorensen wrote: > > Matt, > > I tried to build ITKApps against the release candidate. The

[ITK-dev] [ANNOUNCE] ITK 4.7.0 has been released!

2014-12-19 Thread Matt McCormick
ate slices from volume Add one example about RegionOfInterestImageFilter Brad King (1): setup-hooks: Create .git hooks directory if necessary Matt McCormick (15): ENH: Bump ITK Superbuild tag to 4.6.0. BUG: Fix ConvertAnITKGrayScaleImageToCVMat compare_to_baseline. COMP:

Re: [ITK-dev] cmake variable for itkvcl libraries when linking with ITK

2015-01-07 Thread Matt McCormick
Hi Rashad, The itkvcl library is created [1] as part of the ITKVNL [2] module, so it wiill be listed in the ITKVNL_LIBRARIES CMake variable as described here [3]. HTH, Matt [1] http://itk.org/gitweb?p=ITK.git;a=blob;f=Modules/ThirdParty/VNL/src/vxl/vcl/CMakeLists.txt;h=bfee21e9d32342f7c3b5bb720

Re: [ITK-dev] cmake variable for itkvcl libraries when linking with ITK

2015-01-07 Thread Matt McCormick
On Wed, Jan 7, 2015 at 12:40 PM, Rashad M wrote: > > > On Wed, Jan 7, 2015 at 4:39 PM, Matt McCormick > wrote: >> >> Hi Rashad, >> >> The itkvcl library is created [1] as part of the ITKVNL [2] module, so >> it wiill be listed in the ITKVNL_LIBRAR

[ITK-dev] Discuss what's new ITK in ITK 4.7.0, what is coming in ITK 4.8.0

2015-01-07 Thread Matt McCormick
There are a couple of upcoming opportunities to share, discuss, design, and learn with your fellow ITK community members. Following the recent 4.7.0, this is also a great time to discuss what was new in ITK 4.7.0, and what to work on for ITK 4.8.0. On Thursday (tomorrow), 1:00 PM Eastern USA tim

[ITK-dev] Opportunities to share, discuss, design, and learn with other ITK community members

2015-01-14 Thread Matt McCormick
There are a couple of upcoming opportunities to share, discuss, design, and learn with your fellow ITK community members. On Thursday (tomorrow), 1:00 PM Eastern USA time, there will be a Google+ Hangout where we will be doing code reviews: https://plus.google.com/events/ctg03o79vsd0irnhpugquu

[ITK-dev] Registering for New Gerrit Accounts

2015-01-14 Thread Matt McCormick
Google is currently dropping support for OpenID authentication through Google accounts. While currently registered Gerrit users '*can still use their account'*, new Gerrit account registrations with Google currently face the error: 400. That's an error. OpenID auth request contains an unregis

Re: [ITK-dev] [ITK] Files not found

2015-01-21 Thread Matt McCormick
Hi Edward, It looks like you are trying to use a project that had a CMake configuration for ITKv3. To update the configuration for ITKv4, change target_link_libraries(myexecutable ITKAlgorithms ITKIO ) with target_link_libraries(myexecutable ${ITK_LIBRARIES} ) HTH, Matt On Wed, Jan

[ITK-dev] Opportunities to share, discuss, design, and learn with other ITK community members

2015-01-21 Thread Matt McCormick
There are a couple of upcoming opportunities to share, discuss, design, and learn with your fellow ITK community members. On Thursday (tomorrow), 1:00 PM Eastern USA time, there will be a Google+ Hangout where we will be doing code reviews: https://plus.google.com/events/cjudsaidlnb7v4tpiob79q

[ITK-dev] [ANNOUNCE] ITK Software Guide hardcopies are available on Amazon!

2015-01-29 Thread Matt McCormick
Hardcopies of The ITK Software Guide are available on Amazon! Book 1: http://www.amazon.com/ITK-Software-Guide-Book-Introduction/dp/1930934270/ Book 2: http://www.amazon.com/ITK-Software-Guide-Book-Functionality/dp/1930934289/ Thanks to everyone who helped make this happen! New versions of

Re: [ITK-dev] [ANNOUNCE] ITK Software Guide hardcopies are available on Amazon!

2015-01-30 Thread Matt McCormick
On Fri, Jan 30, 2015 at 3:51 AM, Mathieu Malaterre wrote: > On Thu, Jan 29, 2015 at 8:04 PM, Matt McCormick > wrote: >> Hardcopies of The ITK Software Guide are available on Amazon! >> >> >> Book 1: >> http://www.amazon.com/ITK-Software-Guide-Book-Intr

Re: [ITK-dev] Function-style preprocessor definitions

2015-01-30 Thread Matt McCormick
On Fri, Jan 30, 2015 at 4:06 PM, Brad King wrote: > On 1/30/2015 2:53 PM, Johnson, Hans J wrote: >> CXX_DEFINES = -D) -DITK_IOFACTORY_REGISTERMANGER ….< other stuff> >> >> This happens when building agains VTK and ITK, but with ITK I have >> VTKGlue turned off. > > I cannot reproduce this with a b

[ITK-dev] Opportunities to share, discuss, design, and learn with other ITK community members

2015-02-11 Thread Matt McCormick
There are a couple of upcoming opportunities to share, discuss, design, and learn with your fellow ITK community members. On Thursday (tomorrow), 1:00 PM Eastern USA time, there will be a Google+ Hangout where we will be doing code reviews: https://plus.google.com/events/chnqhe892r77l7q7qdf53o

[ITK-dev] Google Summer of Code Application

2015-02-12 Thread Matt McCormick
Greetings, We are putting together another proposal for ITK to be a Google Summer Of Code organization. If ITK is accepted, Google will fund summer interns to work with on ITK related topics, with help from some of us as volunteer mentors. We have until next Friday February 20th to come up with a

[ITK-dev] Draft of ITK 4.7.1 Release Announcement

2015-02-12 Thread Matt McCormick
Hi, Here is a draft of the ITK 4.7.1 release announcement: https://docs.google.com/a/kitware.com/document/d/1ou07bykls0VipIxV5xXaXUaphup7ImNgpdzDZVN3anY/edit Please look it over and make any corrections or additions. The release is targeted for early next week. Thanks, Matt _

[ITK-dev] Gerrit to GitHub/OAuth email update instructions

2015-02-13 Thread Matt McCormick
Hi, We will be soon be updating our Gerrit instance [1] to support GitHub / OAuth authentication instead of the OpenID based authentication, which is no longer supported. Account migration will occur by matching your currently registered Gerrit email with an email registered on your GitHub accoun

[ITK-dev] [ANNOUNCE] ITK 4.7.1 has been released!

2015-02-18 Thread Matt McCormick
On behalf of the Insight Toolkit Community, we are happy to announce the release of ITK 4.7.1! This is a patch release that addresses critical issues, regressions, important documentation, and compiler support. The 4.7.1 release fixes improves Visual Studio support, addresses Python wrapping runti

[ITK-dev] GSOC 2015 application

2015-02-20 Thread Matt McCormick
A Google Summer of Code (GSOC) application has been submitted for ITK! To increase our potential for being accepted, please add your potential project ideas to this wiki page: http://www.itk.org/Wiki/ITK_Google_Summer_of_Code/2015 ___ Powered by www.k

[ITK-dev] Opportunities to share, discuss, design, and learn with other ITK community members

2015-03-04 Thread Matt McCormick
There are a couple of upcoming opportunities to share, discuss, design, and learn with your fellow ITK community members. On Thursday (tomorrow), 1:00 PM Eastern USA time, there will be a Google+ Hangout where we will be doing code reviews: https://plus.google.com/events/covpn37cs306pbu11gl42g

[ITK-dev] New Ubuntu 14.04 Python Wrapping Nightly

2015-03-09 Thread Matt McCormick
Hi, Just a note that we have a new Ubuntu 14.04 Python Wrapping Nightly: https://open.cdash.org/buildSummary.php?buildid=3723919 and it is in the All Green Club! Hurrah! Matt ___ Powered by www.kitware.com Visit other Kitware open-source projects

Re: [ITK-dev] [ITK] New Ubuntu 14.04 Python Wrapping Nightly

2015-03-09 Thread Matt McCormick
> On Mar 9, 2015, at 4:29 PM, > wrote: > >> Thanks for the addition of the 14.04 build system. >> Wrappings have never been so green :) >> >> Michka >> >>> On 09 Mar 2015, at 19:05, Matt McCormick wrote: >>> >>> Hi, >>>

Re: [ITK-dev] efficiency of vnl_matrix

2015-03-12 Thread Matt McCormick
Hi Jian, Yes, it would be wonderful to improve the efficiency of these basic numerical operations. Funding for the Refactor Numerical Libraries has currently ended, and the effort is currently frozen. However, you are more than welcome to pick it up and we can help you get it into ITK. More inf

Re: [ITK-dev] efficiency of vnl_matrix

2015-03-12 Thread Matt McCormick
gt;> >> > Hi, >> > >> > I think the eigen library is a mature and very fast library for these >> > kind of things: >> > http://eigen.tuxfamily.org/index.php?title=Main_Page >> > >> > You may want to check it out, to see if it offers wha

Re: [ITK-dev] efficiency of vnl_matrix

2015-03-12 Thread Matt McCormick
_intel_lp64 > -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lm -lvnl -lvnl_algo > -I/usr/include/vxl/core -I/usr/include/vxl/vcl -DNDEBUG -O3 > -DUTL_USE_FASTLAPACK > > In my experiments, using blas functions from mkl is the most efficient way. > > best, > Jian Cheng &g

Re: [ITK-dev] [ITK] ITK changes VTK_LIBRARIES?

2015-03-12 Thread Matt McCormick
Hi Jian, Please use the recently released VTK 6.2.0 where this issue has been addressed. Thanks, Matt On Thu, Mar 12, 2015 at 5:44 PM, Jian Cheng wrote: > Hi, > > The the recent release of ITK may changes VTK_LIBRARIES, when I build > ITK with VTK, i.e. set on Module_ITKVtkGlue or Module_WikiEx

Re: [ITK-dev] Kents Work on Explicit instantiation of ITK

2015-03-17 Thread Matt McCormick
Hi, Instead of maintaining a duplicate set of type instantiations, it may be worth exploiting the ITK_WRAP_EXPLICIT option (see Wrapping/Generators/Explicit). This will re-use all the wrapping type instantiation logic, which is also CMake configurable. 2 cents, Matt On Tue, Mar 17, 2015 at 10

Re: [ITK-dev] Kents Work on Explicit instantiation of ITK

2015-03-17 Thread Matt McCormick
ng should not take any longer. Matt > Brad > > On Mar 17, 2015, at 11:00 AM, Matt McCormick > wrote: > >> Hi, >> >> Instead of maintaining a duplicate set of type instantiations, it may >> be worth exploiting the ITK_WRAP_EXPLICIT option (see >> Wr

Re: [ITK-dev] [ITK] Size of ITK source package?

2015-03-24 Thread Matt McCormick
Hi, Since BUILD_TESTING is currently ON by default, we would want to change it to be OFF by default so default options work out-of-the-box. This change can be made, but it will require wrangling of dashboard build maintainers to add BUILD_TESTING=ON to their CTest scripts. Thanks, Matt On Tue, M

Re: [ITK-dev] [ITK] Size of ITK source package?

2015-03-24 Thread Matt McCormick
Dave and Brad, Thanks for the suggestion! That looks like a great suggestion. I've created an issue as a reminder to implement for the next release: https://issues.itk.org/jira/browse/ITK-3355 Thanks, Matt On Tue, Mar 24, 2015 at 1:32 PM, Brad King wrote: > On 03/24/2015 01:24

Re: [ITK-dev] [ITK] Size of ITK source package?

2015-03-24 Thread Matt McCormick
NG is set if > not already defined ... > > Hth > Jc > > > On Tue, Mar 24, 2015 at 1:24 PM, Matt McCormick > wrote: >> >> Hi, >> >> Since BUILD_TESTING is currently ON by default, we would want to >> change it to be OFF by default so default op

[ITK-dev] Gerrit Upgrade Downtime Thursday, March 24th

2015-03-24 Thread Matt McCormick
Hi, We will be upgrading the Gerrit instance on Thursday March, 24th starting at 10 AM Eastern US Time. The server will be unavailable for multiple hours while the upgrade is performed. Thank you for your patience. Matt ___ Powered by www.kitware.com

Re: [ITK-dev] ITK Dashboard failed

2015-03-25 Thread Matt McCormick
Hi Kevin, Thanks for the note! This issue should be fixed with tomorrow's build: http://itk.org/gitweb?p=ITK.git;a=commit;h=5413fa6d13033ba586c16d08a912b7d4ed008585 Thanks, Matt On Wed, Mar 25, 2015 at 9:24 AM, Kevin H. Hobbs wrote: > My crontab script on bubbles does : > > # Update ITKS

Re: [ITK-dev] [ITK] Benchmarks for ITK

2015-03-25 Thread Matt McCormick
Hi Tim, Thanks for reaching out to the list. Improvements in ITK's support for parallel processing and architectures would be greatly welcome. We currently have some support for OpenCL-based computing. However, if appropriate, addition of SYCL or better C++ programming capabilities would be welc

Re: [ITK-dev] Gerrit Upgrade Downtime Thursday, March 24th

2015-03-25 Thread Matt McCormick
Yes! Very exciting improvements are coming! More details will follow, soon. On Wed, Mar 25, 2015 at 8:30 AM, Bradley Lowekamp wrote: > Matt, > > Great news! Sounds like something exciting and new is coming... > > Brad > > On Mar 24, 2015, at 1:56 PM, Matt McCormick >

[ITK-dev] Updates to Gerrit Robot Builds

2015-03-30 Thread Matt McCormick
Hi folks, Along with our recent Gerrit upgrade, we have also re-worked and greatly improved the robot builds for proposed patches. The new system uses the Gerrit Trigger plugin for Jenkins. Two Jenkins instances currently will create robot builds, one on the Azure cloud for Linux and Windows build

Re: [ITK-dev] Gerrit Download Links

2015-04-07 Thread Matt McCormick
Hi Brad, Thanks for the note. Yes, it should be port 22. I'll look into correcting the URL. Thanks, Matt On Tue, Apr 7, 2015 at 8:55 AM, Bradley Lowekamp wrote: > Matt, > > In the new Gerrit interface, on the "Download" pull down menu I am getting > the following URLs in the command: > > git

[ITK-dev] Azure Robot Builds are offline

2015-04-07 Thread Matt McCormick
Hi folks, Since our Azure grant has currently ended, the Gerrit Azure robot builds for Linux and Windows have ceased. I will replace these with Kitware Robot builds. Thanks, Matt ___ Powered by www.kitware.com Visit other Kitware open-source projects a

[ITK-dev] Opportunities to share, discuss, design, and learn with other ITK community members

2015-04-09 Thread Matt McCormick
There are a couple of upcoming opportunities to share, discuss, design, and learn with your fellow ITK community members. Today, 1:00 PM Eastern USA time, there will be a Google+ Hangout where we will be doing code reviews: https://plus.google.com/events/cfn4h91mb26l1coq9hu63kugoi8 On Friday

[ITK-dev] Opportunities to share, discuss, design, and learn with other ITK community members

2015-04-15 Thread Matt McCormick
There are a couple of upcoming opportunities to share, discuss, design, and learn with your fellow ITK community members. On Thursday (tomorrow), 1:00 PM Eastern USA time, there will be a Google+ Hangout where we will be doing code reviews: https://plus.google.com/u/1/events/chh04itdo3em787ufp

Re: [ITK-dev] [ITK] Expected build change

2015-04-20 Thread Matt McCormick
Thanks for the note! On Mon, Apr 20, 2015 at 3:51 PM, Kevin H. Hobbs wrote: > The operating system on bubbles and murron has been updated and the > build names have been changed to reflect the new OS. > > > ___ > Powered by www.kitware.com > > Visit oth

[ITK-dev] Patches for ITK 4.7.2

2015-04-20 Thread Matt McCormick
Hi folks, It is time for another bugfix release - 4.7.2. Here are the current patches on the release branch since 4.7.1: Arnaud Gelas (1): COMP: fix warning with non default template parameter for OutputImage Bradley Lowekamp (3): BUG: Move LBFGSB callback helper to parent BUG

Re: [ITK-dev] [ITK] ITK bugs with recent patch

2015-04-21 Thread Matt McCormick
After conversations, here is a new patch: http://review.source.kitware.com/#/c/19667/ I tested locally on Linux. Please test on the Mac. Thanks, Matt On Tue, Apr 21, 2015 at 1:54 PM, Bill Lorensen wrote: > JC, > > Patches from experts are also welcome on gerrit. > > Bill > > > On Tue, Apr 2

[ITK-dev] Opportunities to share, discuss, design, and learn with other ITK community members

2015-04-22 Thread Matt McCormick
There are a couple of upcoming opportunities to share, discuss, design, and learn with your fellow ITK community members. On Thursday (tomorrow), 1:00 PM Eastern USA time, there will be a Google+ Hangout where we will be doing code reviews: https://plus.google.com/u/1/events/c40jlhlsa9t5ckaedu

[ITK-dev] New Highly Parallel Build System, the POWER8

2015-04-22 Thread Matt McCormick
Hi folks, With thanks to Chuck Atkins and FSF France, we have a new build on the dashboard [1] for the IBM POWER8 [2] system. This is a PowerPC64 system with 20 cores and 8 threads per core -- a great system where we can test and improve ITK parallel computing performance! To generate a test bu

Re: [ITK-dev] [ITK] New Highly Parallel Build System, the POWER8

2015-04-23 Thread Matt McCormick
weight > multi-threading. > > Thanks, > Brad > > On Apr 22, 2015, at 11:51 PM, Matt McCormick > wrote: > >> Hi folks, >> >> With thanks to Chuck Atkins and FSF France, we have a new build on the >> dashboard [1] for the IBM POWER8 [2] system. This is

Re: [ITK-dev] New gerrit UI

2015-04-27 Thread Matt McCormick
Hi Bill, Thanks for the feedback. We can move to Gerrit 2.11 now that it is out. The big feature gain will be web-based editing of patches. The down-side is that they dropped support for the old change screen UI. Do you or anyone else use the old UI? I quite like the new one also. Thanks for

Re: [ITK-dev] New gerrit UI

2015-04-28 Thread Matt McCormick
y, IA 52242 > > On Apr 27, 2015, at 6:37 PM, Bill Lorensen wrote: > > I like the new interface. I don't care if the old ui goes away. > > On Apr 27, 2015 5:18 PM, "Matt McCormick" > wrote: >> >> Hi Bill, >> >> Thanks for the feedback. &

[ITK-dev] Opportunities to share, discuss, design, and learn with other ITK community members

2015-04-29 Thread Matt McCormick
There are a couple of upcoming opportunities to share, discuss, design, and learn with your fellow ITK community members. On Thursday (tomorrow), 1:00 PM Eastern USA time, there will be a Google+ Hangout where we will be doing code reviews: https://plus.google.com/events/cm4kg1r8i47a7vhcftds0l

Re: [ITK-dev] Insight Journal submission page down?

2015-04-30 Thread Matt McCormick
Hi Chuck, Thank you for the note! A new issue has been added, "2015 January-December". Looking forward to your contribution! Matt On Sun, Apr 26, 2015 at 10:59 AM, Chuck Hatt wrote: > I'm trying to submit a contribution to the Insight Journal, but the > submission page isn't working. It says

Re: [ITK-dev] [ITK] ITK bugs with recent patch

2015-04-30 Thread Matt McCormick
ITK version; we will make the needed adjustments (if > needed) for the next release. > Thanks > > Michka > > > On 21 Apr 2015, at 23:46, Matt McCormick wrote: > > After conversations, here is a new patch: > > http://review.source.kitware.com/#/c/19667/ > > I

[ITK-dev] [ANNOUNCE] ITK 4.7.2 has been released!

2015-05-04 Thread Matt McCormick
On behalf of the Insight Toolkit Community, we are happy to announce the release of ITK 4.7.2! Release files can be downloaded from: http://itk.org/ITK/resources/software.html This is a patch release that fixes critical issues, regressions, important documentation, and compiler support. The 4.

[ITK-dev] Opportunities to share, discuss, design, and learn with other ITK community members

2015-05-12 Thread Matt McCormick
There are a couple of upcoming opportunities to share, discuss, design, and learn with your fellow ITK community members. On Thursday (tomorrow), 1:00 PM Eastern USA time, there will be a Google+ Hangout where we will be doing code reviews: https://plus.google.com/events/c6g0t2lmomori9ccnptep9

Re: [ITK-dev] ITK and GCC 5.1

2015-05-22 Thread Matt McCormick
Yes, the fixes did not make it into 4.7.2. Please use Git master [1]. There are a couple of outstanding warnings and test failures. Thanks, Matt [1] http://www.itk.org/Wiki/ITK/Git On Fri, May 22, 2015 at 11:59 AM, Bradley Lowekamp wrote: > Hello, > > I thought a couple patches were placed

Re: [ITK-dev] ITK API Change (was ITKApps failing after recent commit)

2015-05-26 Thread Matt McCormick
Hi Bill, Thanks for bringing attention to this. If we cannot find a way for external Event code to work without modification, I thing we should revert the change before we release 4.8. 2 cents, Matt On Tue, May 26, 2015 at 11:26 AM, Bill Lorensen wrote: > itkEventMacro no longer works the way

[ITK-dev] Enhancements for 4.8

2015-05-26 Thread Matt McCormick
Hi, Per our release schedule [1], the first 4.8 release candidate is scheduled to be tagged on Monday, June 8th. Please have all enhancements that have been reviewed and are passing tests merged by next Friday, June 5th. Thanks, Matt [1] http://www.itk.org/Wiki/ITK/Release_Schedule

Re: [ITK-dev] clang -Wdocumentation-unknown-command warnings

2015-05-28 Thread Matt McCormick
Hi Sean, These are aliases defined to help link to the Wiki examples. They are defined in the doxygen.config [1]. Matt [1] http://itk.org/gitweb?p=ITK.git;a=blob;f=Utilities/Doxygen/doxygen.config.in;h=452ebc425317d06657fa2f0d54f5febf77490c4d;hb=HEAD#l231 On Thu, May 28, 2015 at 3:21 PM, Sean

Re: [ITK-dev] clang -Wdocumentation-unknown-command warnings

2015-05-28 Thread Matt McCormick
On Thu, May 28, 2015 at 3:28 PM, Sean McBride wrote: > On Thu, 28 May 2015 15:26:24 -0400, Matt McCormick said: > >>These are aliases defined to help link to the Wiki examples. They are >>defined in the doxygen.config [1]. >> >>Matt >> >>[1] http://i

[ITK-dev] Feature freeze for ITK 4.8

2015-06-08 Thread Matt McCormick
Hello, There have been a number of outstanding contributions for ITK 4.8! Let's shape up the toolkit so these contributions can have the greatest impact. Please refrain from merging enhancements to master during the release candidate phase so we can focus on - A clean dashboard. - Bug fixes. - D

[ITK-dev] ITK 4.8.0 Release Candidate 1 is ready for testing!

2015-06-11 Thread Matt McCormick
On behalf of the Insight Toolkit community, we are proud to announce that ITK 4.8.0 release candidate 1 has been tagged and is available for testing! Please take this opportunity to test the new features in the release candidate. To obtain the source code, git clone http://itk.org/ITK.git cd I

[ITK-dev] [ANNOUNCE] ITK 4.8.0 Release Candidate 2 is ready for testing!

2015-06-18 Thread Matt McCormick
On behalf of the Insight Toolkit community, we are proud to announce that ITK 4.8.0 release candidate 2 has been tagged and is available for testing! Please take this opportunity to test the new features in the release candidate. To obtain the source code, git clone http://itk.org/ITK.git cd

Re: [ITK-dev] Refresh cmake ITKData

2015-06-24 Thread Matt McCormick
Hi Pablo, Could you please share the full text of an error? Thanks, Matt On Wed, Jun 24, 2015 at 8:20 PM, Pablo Hernández < pablo.hernandez.cer...@outlook.com> wrote: > Hi, I am receiving a lot of wrong hash errors when building ITKData. I am > guessing that is because I am updating an old buil

Re: [ITK-dev] Refresh cmake ITKData

2015-06-24 Thread Matt McCormick
Does the following work? wget http://itkexternaldata.blob.core.windows.net/md5/8aa41348437f595b21e08eb46726002a It is working from my location. On Wed, Jun 24, 2015 at 8:59 PM, Pablo Hernández < pablo.hernandez.cer...@outlook.com> wrote: > After "make" in build directory: There are quite a lo

Re: [ITK-dev] Refresh cmake ITKData

2015-06-24 Thread Matt McCormick
What version of CMake? A newer version of CMake may at least be more informative on the source of the error. HTH, Matt On Wed, Jun 24, 2015 at 9:20 PM, Pablo Hernández < pablo.hernandez.cer...@outlook.com> wrote: > If I do make -j4, I receive the same errors but with different objects, > and the

Re: [ITK-dev] Refresh cmake ITKData

2015-06-24 Thread Matt McCormick
Was CMake built with OpenSSL support? Check for CMAKE_USE_OPENSSL It is required to make https connections. On Wed, Jun 24, 2015 at 9:39 PM, Pablo Hernández < pablo.hernandez.cer...@outlook.com> wrote: > It's pretty new... > > [phc@phc build]$ cmake --version > cmake version 3.2.20150216-gf72

Re: [ITK-dev] Refresh cmake ITKData

2015-06-25 Thread Matt McCormick
cmake ITKData > Date: Wed, 24 Jun 2015 22:34:46 -0400 > CC: pablo.hernandez.cer...@outlook.com; insight-developers@itk.org > To: matt.mccorm...@kitware.com > > Maybe it's a firewall or proxy issue. What is the size of the files? Are > the contents of gave file an html error c

[ITK-dev] Gerrit downtime today, 3PM

2015-06-26 Thread Matt McCormick
Hello, Gerrit will be down today at 3PM for approximately half an hour of maintenance. Thanks, Matt ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Kitware offers ITK Trainin

[ITK-dev] [ANNOUNCE] ITK 4.8.0 Release Candidate 3 is ready for testing!

2015-06-26 Thread Matt McCormick
On behalf of the Insight Toolkit community, we are proud to announce that ITK 4.8.0 release candidate 3 has been tagged and is available for testing! Please take this opportunity to test the new features in the release candidate. To obtain the source code, git clone http://itk.org/ITK.git c

Re: [ITK-dev] [ITK-users] [ANNOUNCE] ITK 4.8.0 Release Candidate 3 is ready for testing!

2015-06-27 Thread Matt McCormick
ernán Curiale Ph.D Candidate > | E.T.S.I de Telecomunicación, Universidad de Valladolid > | Campus Miguel Delibes s/n, 47011 Valladolid, Spain > | Phone: 983-423000 ext. 5590 > | Web: http://www.lpi.tel.uva.es/ > | Personal Web: www.curiale.com.ar > |_____

Re: [ITK-dev] ITKApps regression

2015-06-29 Thread Matt McCormick
Hi Bill, Thanks for testing. This patch should address the link error: http://review.source.kitware.com/#/c/19950/ Thanks, Matt On Sun, Jun 28, 2015 at 4:36 PM, Bill Lorensen wrote: > This commit: > [f9f12a06c634baf6d4f9ccceda619217da631e4f] ENH: Add shared libraries > for ITK libraries > c

[ITK-dev] ITK repository feature freeze lifted

2015-07-03 Thread Matt McCormick
Hi, The ITK repository has been tagged with v4.8.0, and we are on our way to 4.9! :-) Merge on! Matt ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Kitware offers ITK Trai

[ITK-dev] [ANNOUNCE] ITK 4.8.0 has been released!

2015-07-07 Thread Matt McCormick
fix rst formatting Add one example to overlay one label map on top of one image Minor fixes in page title COMP: Fix sphinx warning (missing '.' for one title) Bradley Lowekamp (1): BUG: Fix ITK_WRAP_PYTHON check Dženan Zukić (1): Adding DicomSeries

Re: [ITK-dev] [ITK] Compile errors in wiki and sphinx examples after recent changes

2015-07-07 Thread Matt McCormick
The examples and apps highlight that this will be a headache for pre-existing code. We could ensure a smooth transition by overloading the SetFixedParameters methods with a backwards compatible versions that accept ParametersType. This would prevent build errors. These overloaded methods could al

Re: [ITK-dev] itk::ImportImageFilter buffer

2015-07-27 Thread Matt McCormick
Hi Marco, Is numberOfPixels correct? Matt On Mon, Jul 27, 2015 at 7:49 AM, Marco Dev wrote: > Hi dears, > How can I pass the string as unsigned char to importimagefilter I casted but > Just for one character > >const bool importImageFilterWillOwnTheBuffer = true; > >importFilter->SetImp

Re: [ITK-dev] itk::ImportImageFilter buffer

2015-07-27 Thread Matt McCormick
he space and pass to localBuffer > Is my idea is correct ? > I want to add a big source file as a buffer into a Itk image > Thanks in advance > > On Mon, Jul 27, 2015 at 6:35 PM, Matt McCormick > wrote: >> >> Hi Marco, >> >> Is numberOfPixels correct? >&

Re: [ITK-dev] ITK Static Initialization Issue with pthreads and atomic ints

2015-07-31 Thread Matt McCormick
Hi Brad, Sujin took a look, and he spotted a missing initialization of the mutex lock for the 32 bit case. I put the change in a patch here: http://review.source.kitware.com/#/c/20039/ Please test on the 32 bit system. Thanks, Matt On Fri, Jul 31, 2015 at 10:55 AM, Bradley Lowekamp wrote:

Re: [ITK-dev] Ubuntu 14 Test failure bisect results

2015-07-31 Thread Matt McCormick
results of the git bisect: > > 674acdb2dd5546b7045f7253c84e4f9f237405e8 is the first bad commit > commit 674acdb2dd5546b7045f7253c84e4f9f237405e8 > Author: Matt McCormick > Date: Sun May 31 21:00:55 2015 -0400 > > ENH: Use gold linker on Linux with GCC. > > > > T

Re: [ITK-dev] converting metaimage format to nrrd

2015-08-04 Thread Matt McCormick
Hi Marco, This example may be useful: http://itk.org/ITKExamples/src/IO/ImageBase/ConvertFileFormats/Documentation.html HTH, Matt On Tue, Aug 4, 2015 at 8:04 AM, Marco Dev wrote: > Hi dears, > Is way to convert metaimage (.mhd and .raw )format to .nrrd format ? > Thanks in advance. > > > __

Re: [ITK-dev] Ubuntu 14 Test failure bisect results

2015-08-06 Thread Matt McCormick
Lowekamp wrote: > Matt, > > What were the results of this experiment? It'd be nice to clean up the > release branch of these failing tests. > > And I want to steal the correct solution for SimpleITK too :) > > Brad > > On Jul 31, 2015, at 3:29 PM, Matt McCormick

Re: [ITK-dev] Ubuntu 14 Test failure bisect results

2015-08-06 Thread Matt McCormick
Here is the patch: http://review.source.kitware.com/#/c/20068/ Interestingly, the test failures are not repeatable on Gentoo with the same versions of GCC / binutils. Matt On Thu, Aug 6, 2015 at 10:28 AM, Matt McCormick wrote: > Hi Brad, > > I have been doing some Experimental buil

Re: [ITK-dev] link failure ITKVideoBridgeOpenCVHeaderTest1 on Ubuntu 14.04

2015-08-13 Thread Matt McCormick
Hi Arnaud, Is this with building the examples with the superbuild? I think I was getting this error, too. Here is a patch that should address it: http://review.source.kitware.com/#/c/20077/ Thanks, Matt On Thu, Aug 13, 2015 at 11:40 AM, Arnaud Gelas wrote: > Hi all, > > I have just tried b

Re: [ITK-dev] converting coordinate system

2015-08-13 Thread Matt McCormick
Hello, All computations in ITK are done in the world coordinate system, i.e. the physical coordinates. To convert an image coordinate, i.e. the index coordinates, use the TransformIndexToPhysicalPoint [1] method on itk::Image. This takes into account image orientation and spacing. HTH, Matt [1

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