[jira] [Commented] (VFS-443) Need an easy way to convert from a FileObject to a File

2012-11-14 Thread Joerg Schaible (JIRA)
[ https://issues.apache.org/jira/browse/VFS-443?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13496963#comment-13496963 ] Joerg Schaible commented on VFS-443: Hi Greg, actually I think this is not the proper

[jira] [Reopened] (VFS-443) Need an easy way to convert from a FileObject to a File

2012-11-14 Thread Joerg Schaible (JIRA)
[ https://issues.apache.org/jira/browse/VFS-443?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Joerg Schaible reopened VFS-443: Need an easy way to convert from a FileObject to a File

[jira] [Commented] (IMAGING-97) Fails to read most Sony A100 JPG files generated from Photoshop CS2

2012-11-14 Thread Adrian Moerchen (JIRA)
[ https://issues.apache.org/jira/browse/IMAGING-97?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13496966#comment-13496966 ] Adrian Moerchen commented on IMAGING-97: We've got the same error with images

[jira] [Commented] (IMAGING-97) Fails to read most Sony A100 JPG files generated from Photoshop CS2

2012-11-14 Thread Adrian Moerchen (JIRA)
[ https://issues.apache.org/jira/browse/IMAGING-97?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13496985#comment-13496985 ] Adrian Moerchen commented on IMAGING-97: Found a workaround (at least for us) for

[jira] [Commented] (VFS-443) Need an easy way to convert from a FileObject to a File

2012-11-14 Thread Nicholas Allen (JIRA)
[ https://issues.apache.org/jira/browse/VFS-443?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13496989#comment-13496989 ] Nicholas Allen commented on VFS-443: Thanks for making this public ;-) Is this now

[jira] [Commented] (VFS-443) Need an easy way to convert from a FileObject to a File

2012-11-14 Thread Nicholas Allen (JIRA)
[ https://issues.apache.org/jira/browse/VFS-443?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13496995#comment-13496995 ] Nicholas Allen commented on VFS-443: Looking at the LocalFile.java class it looks like

[jira] [Updated] (VFS-443) Need an easy way to convert from a FileObject to a File

2012-11-14 Thread Nicholas Allen (JIRA)
[ https://issues.apache.org/jira/browse/VFS-443?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Nicholas Allen updated VFS-443: --- Description: I've seen the reasons why Apache does not want to provide an easy way to convert from a

[jira] [Created] (COLLECTIONS-435) CollectionUtils.removeAll() calls ListUtils.retainAll()

2012-11-14 Thread Mikolaj Rydzewski (JIRA)
Mikolaj Rydzewski created COLLECTIONS-435: - Summary: CollectionUtils.removeAll() calls ListUtils.retainAll() Key: COLLECTIONS-435 URL: https://issues.apache.org/jira/browse/COLLECTIONS-435

[jira] [Updated] (COLLECTIONS-435) CollectionUtils.removeAll() calls ListUtils.retainAll()

2012-11-14 Thread Mikolaj Rydzewski (JIRA)
[ https://issues.apache.org/jira/browse/COLLECTIONS-435?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Mikolaj Rydzewski updated COLLECTIONS-435: -- Description: A snippet from CollectionUtils.java:

[jira] [Closed] (COLLECTIONS-435) CollectionUtils.removeAll() calls ListUtils.retainAll()

2012-11-14 Thread Joerg Schaible (JIRA)
[ https://issues.apache.org/jira/browse/COLLECTIONS-435?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Joerg Schaible closed COLLECTIONS-435. -- Resolution: Duplicate CollectionUtils.removeAll() calls

[jira] [Created] (IMAGING-99) java.io.IOException: Could not read block

2012-11-14 Thread st.h (JIRA)
st.h created IMAGING-99: --- Summary: java.io.IOException: Could not read block Key: IMAGING-99 URL: https://issues.apache.org/jira/browse/IMAGING-99 Project: Commons Imaging Issue Type: Bug

[jira] [Updated] (MATH-887) AbstractLeastSquares cleanup

2012-11-14 Thread Gilles (JIRA)
[ https://issues.apache.org/jira/browse/MATH-887?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gilles updated MATH-887: Fix Version/s: (was: 3.1) Further modifications must be performed when preparing the next major release.

[jira] [Commented] (MATH-894) Cleanup of ResizableDoubleArray (o.a.c.m.util)

2012-11-14 Thread Gilles (JIRA)
[ https://issues.apache.org/jira/browse/MATH-894?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497051#comment-13497051 ] Gilles commented on MATH-894: - Shall we make the expansionFactor, contractionCriteria[1] and

[jira] [Commented] (VFS-444) ResourceFileProvider res:// failed to obtain FileObject from resolved FileName

2012-11-14 Thread Walter Eaves (JIRA)
[ https://issues.apache.org/jira/browse/VFS-444?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497076#comment-13497076 ] Walter Eaves commented on VFS-444: -- Thanks. Yes, you would hope for that, but, ISTR, that

[jira] [Commented] (MATH-894) Cleanup of ResizableDoubleArray (o.a.c.m.util)

2012-11-14 Thread Luc Maisonobe (JIRA)
[ https://issues.apache.org/jira/browse/MATH-894?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497075#comment-13497075 ] Luc Maisonobe commented on MATH-894: bq. Shall we make the expansionFactor,

[jira] [Updated] (MATH-894) Cleanup of ResizableDoubleArray (o.a.c.m.util)

2012-11-14 Thread Gilles (JIRA)
[ https://issues.apache.org/jira/browse/MATH-894?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gilles updated MATH-894: Attachment: MATH-894.patch Please have a look at the attached patch. Instead of adding a {code} public double

[jira] [Commented] (MATH-894) Cleanup of ResizableDoubleArray (o.a.c.m.util)

2012-11-14 Thread Gilles (JIRA)
[ https://issues.apache.org/jira/browse/MATH-894?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497177#comment-13497177 ] Gilles commented on MATH-894: - I also find it slightly odd that the expansionFactor and

[jira] [Commented] (CSV-68) Use Builder pattern for CSVFormat

2012-11-14 Thread Gary Gregory (JIRA)
[ https://issues.apache.org/jira/browse/CSV-68?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497178#comment-13497178 ] Gary Gregory commented on CSV-68: - Hm... so why is this: {code:java} CSVFormat format =

[jira] [Comment Edited] (LANG-757) StringEscapeUtils.unescapeHtml: handle HTML escapes without semicolon

2012-11-14 Thread Duncan Jones (JIRA)
[ https://issues.apache.org/jira/browse/LANG-757?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13491494#comment-13491494 ] Duncan Jones edited comment on LANG-757 at 11/14/12 4:14 PM: -

[jira] [Commented] (LANG-757) StringEscapeUtils.unescapeHtml: handle HTML escapes without semicolon

2012-11-14 Thread Duncan Jones (JIRA)
[ https://issues.apache.org/jira/browse/LANG-757?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497200#comment-13497200 ] Duncan Jones commented on LANG-757: --- As a quick test, I confirmed that Firefox 16.0.2

[jira] [Commented] (CSV-68) Use Builder pattern for CSVFormat

2012-11-14 Thread Benedikt Ritter (JIRA)
[ https://issues.apache.org/jira/browse/CSV-68?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497212#comment-13497212 ] Benedikt Ritter commented on CSV-68: Hi Gary, the problem is, that the user has no

[jira] [Updated] (LANG-757) StringEscapeUtils.unescapeHtml: handle HTML escapes without semicolon

2012-11-14 Thread Duncan Jones (JIRA)
[ https://issues.apache.org/jira/browse/LANG-757?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Duncan Jones updated LANG-757: -- Attachment: (was: commons-lang3-LANG-757.patch) StringEscapeUtils.unescapeHtml: handle HTML

[jira] [Updated] (LANG-757) StringEscapeUtils.unescapeHtml: handle HTML escapes without semicolon

2012-11-14 Thread Duncan Jones (JIRA)
[ https://issues.apache.org/jira/browse/LANG-757?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Duncan Jones updated LANG-757: -- Attachment: commons-lang3-LANG-757.patch New patch reverts public method to private and adds comment

[jira] [Commented] (CSV-68) Use Builder pattern for CSVFormat

2012-11-14 Thread Gary Gregory (JIRA)
[ https://issues.apache.org/jira/browse/CSV-68?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497255#comment-13497255 ] Gary Gregory commented on CSV-68: - Hello Benedikt, I'm playing a bit of the devil's advocate

[jira] [Commented] (MATH-894) Cleanup of ResizableDoubleArray (o.a.c.m.util)

2012-11-14 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-894?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497274#comment-13497274 ] Phil Steitz commented on MATH-894: -- I had the same thought about the dependency and agree

[jira] [Updated] (MATH-748) Additional Clustering Algorithms

2012-11-14 Thread Reid Hochstedler (JIRA)
[ https://issues.apache.org/jira/browse/MATH-748?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Reid Hochstedler updated MATH-748: -- Attachment: MATH-748.txt DBSCAN clustering Additional Clustering Algorithms

[jira] [Commented] (VFS-443) Need an easy way to convert from a FileObject to a File

2012-11-14 Thread Gary Gregory (JIRA)
[ https://issues.apache.org/jira/browse/VFS-443?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497328#comment-13497328 ] Gary Gregory commented on VFS-443: -- @Joerge's

[jira] [Commented] (MATH-748) Additional Clustering Algorithms

2012-11-14 Thread Thomas Neidhart (JIRA)
[ https://issues.apache.org/jira/browse/MATH-748?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497340#comment-13497340 ] Thomas Neidhart commented on MATH-748: -- Hi Reid, great, thanks for the contribution. I

[jira] [Created] (MATH-897) Add DBScan clustering algorithm

2012-11-14 Thread Thomas Neidhart (JIRA)
Thomas Neidhart created MATH-897: Summary: Add DBScan clustering algorithm Key: MATH-897 URL: https://issues.apache.org/jira/browse/MATH-897 Project: Commons Math Issue Type: Sub-task

[jira] [Updated] (MATH-748) Additional Clustering Algorithms

2012-11-14 Thread Thomas Neidhart (JIRA)
[ https://issues.apache.org/jira/browse/MATH-748?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Thomas Neidhart updated MATH-748: - Assignee: (was: Thomas Neidhart) Additional Clustering Algorithms

[jira] [Commented] (VFS-443) Need an easy way to convert from a FileObject to a File

2012-11-14 Thread Joerg Schaible (JIRA)
[ https://issues.apache.org/jira/browse/VFS-443?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497351#comment-13497351 ] Joerg Schaible commented on VFS-443: 1/ I am -1 to make getLocalFile() public. The

[jira] [Commented] (MATH-888) GammaDistribution returns infinite density when cdf = 1

2012-11-14 Thread Zev Hochberg (JIRA)
[ https://issues.apache.org/jira/browse/MATH-888?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497353#comment-13497353 ] Zev Hochberg commented on MATH-888: --- I've built trunk, and I do get the results Thomas

[jira] [Commented] (MATH-888) GammaDistribution returns infinite density when cdf = 1

2012-11-14 Thread Thomas Neidhart (JIRA)
[ https://issues.apache.org/jira/browse/MATH-888?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497356#comment-13497356 ] Thomas Neidhart commented on MATH-888: -- Hi Zev, thanks for the feedback. Could you

[jira] [Updated] (MATH-897) Add DBScan clustering algorithm

2012-11-14 Thread Reid Hochstedler (JIRA)
[ https://issues.apache.org/jira/browse/MATH-897?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Reid Hochstedler updated MATH-897: -- Attachment: MATH-748.txt Implementation of DBSCAN clustering. Add DBScan

[jira] [Commented] (MATH-888) GammaDistribution returns infinite density when cdf = 1

2012-11-14 Thread Zev Hochberg (JIRA)
[ https://issues.apache.org/jira/browse/MATH-888?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497380#comment-13497380 ] Zev Hochberg commented on MATH-888: --- Here's a unit test error log, when I copy trunk to

[jira] [Commented] (MATH-888) GammaDistribution returns infinite density when cdf = 1

2012-11-14 Thread Thomas Neidhart (JIRA)
[ https://issues.apache.org/jira/browse/MATH-888?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497396#comment-13497396 ] Thomas Neidhart commented on MATH-888: -- ok, the test should be fixed, the sleep was

[jira] [Created] (CONFIGURATION-515) Make private methods in PropertiesConfiguration.PropertiesWriter protected

2012-11-14 Thread Chris Seieroe (JIRA)
Chris Seieroe created CONFIGURATION-515: --- Summary: Make private methods in PropertiesConfiguration.PropertiesWriter protected Key: CONFIGURATION-515 URL:

[jira] [Commented] (VFS-443) Need an easy way to convert from a FileObject to a File

2012-11-14 Thread Gary Gregory (JIRA)
[ https://issues.apache.org/jira/browse/VFS-443?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497403#comment-13497403 ] Gary Gregory commented on VFS-443: -- -1 it is: {noformat} commit -m Revert to making

[jira] [Updated] (CSV-68) Use Builder pattern for CSVFormat

2012-11-14 Thread Benedikt Ritter (JIRA)
[ https://issues.apache.org/jira/browse/CSV-68?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Benedikt Ritter updated CSV-68: --- Attachment: CSV-68_20121114.patch Hi Gary, being critical is a good thing, so no worries! I've created

[jira] [Updated] (MATH-897) Add DBScan clustering algorithm

2012-11-14 Thread Thomas Neidhart (JIRA)
[ https://issues.apache.org/jira/browse/MATH-897?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Thomas Neidhart updated MATH-897: - Attachment: MATH-897-review.patch Hi Reid, please find attached a review of your patch with the

[jira] [Commented] (MATH-897) Add DBScan clustering algorithm

2012-11-14 Thread Thomas Neidhart (JIRA)
[ https://issues.apache.org/jira/browse/MATH-897?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497487#comment-13497487 ] Thomas Neidhart commented on MATH-897: -- ahja, I also extracted the EuclideanDoublePoint

[jira] [Updated] (CSV-68) Use the Builder pattern for CSVFormat

2012-11-14 Thread Gary Gregory (JIRA)
[ https://issues.apache.org/jira/browse/CSV-68?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary Gregory updated CSV-68: Summary: Use the Builder pattern for CSVFormat (was: Use Builder pattern for CSVFormat) Use the Builder

[jira] [Commented] (CSV-68) Use the Builder pattern for CSVFormat

2012-11-14 Thread Gary Gregory (JIRA)
[ https://issues.apache.org/jira/browse/CSV-68?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497500#comment-13497500 ] Gary Gregory commented on CSV-68: - Yes, that seems good. I committed

[jira] [Commented] (MATH-894) Cleanup of ResizableDoubleArray (o.a.c.m.util)

2012-11-14 Thread Gilles (JIRA)
[ https://issues.apache.org/jira/browse/MATH-894?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497525#comment-13497525 ] Gilles commented on MATH-894: - New protected methods getArrayRef() and getStartIndex() added in

[jira] [Commented] (MATH-894) Cleanup of ResizableDoubleArray (o.a.c.m.util)

2012-11-14 Thread Gilles (JIRA)
[ https://issues.apache.org/jira/browse/MATH-894?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497557#comment-13497557 ] Gilles commented on MATH-894: - DescriptiveStatistics updated in revision 1409509.

[jira] [Commented] (MATH-894) Cleanup of ResizableDoubleArray (o.a.c.m.util)

2012-11-14 Thread Gilles (JIRA)
[ https://issues.apache.org/jira/browse/MATH-894?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497575#comment-13497575 ] Gilles commented on MATH-894: - Would removing the _private_ initialCapacity field break

[jira] [Commented] (MATH-894) Cleanup of ResizableDoubleArray (o.a.c.m.util)

2012-11-14 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-894?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497589#comment-13497589 ] Phil Steitz commented on MATH-894: -- Changing names or removing private fields does not

[jira] [Commented] (MATH-894) Cleanup of ResizableDoubleArray (o.a.c.m.util)

2012-11-14 Thread Gilles (JIRA)
[ https://issues.apache.org/jira/browse/MATH-894?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497594#comment-13497594 ] Gilles commented on MATH-894: - bq. Would removing [...] private [...] field break compatibility?

[jira] [Commented] (MATH-894) Cleanup of ResizableDoubleArray (o.a.c.m.util)

2012-11-14 Thread Gilles (JIRA)
[ https://issues.apache.org/jira/browse/MATH-894?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497655#comment-13497655 ] Gilles commented on MATH-894: - It seems rather far-fetched to imagine that an application would

[jira] [Created] (VFS-445) Add FileSystemManager.resolveFile(URI) and resolveFile(URL)

2012-11-14 Thread Gary Gregory (JIRA)
Gary Gregory created VFS-445: Summary: Add FileSystemManager.resolveFile(URI) and resolveFile(URL) Key: VFS-445 URL: https://issues.apache.org/jira/browse/VFS-445 Project: Commons VFS Issue

[jira] [Resolved] (VFS-445) Add FileSystemManager.resolveFile(URI) and resolveFile(URL)

2012-11-14 Thread Gary Gregory (JIRA)
[ https://issues.apache.org/jira/browse/VFS-445?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary Gregory resolved VFS-445. -- Resolution: Fixed {noformat} commit -m [VFS-445] Add FileSystemManager.resolveFile(URI) and