[jira] [Updated] (SPARK-19870) Repeatable deadlock on BlockInfoManager and TorrentBroadcast
[ https://issues.apache.org/jira/browse/SPARK-19870?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Hyukjin Kwon updated SPARK-19870: - Labels: bulk-closed (was: ) > Repeatable deadlock on BlockInfoManager and TorrentBroadcast > > > Key: SPARK-19870 > URL: https://issues.apache.org/jira/browse/SPARK-19870 > Project: Spark > Issue Type: Bug > Components: Block Manager, Shuffle >Affects Versions: 2.0.2, 2.1.0 > Environment: ubuntu linux 14.04 x86_64 on ec2, hadoop cdh 5.10.0, > yarn coarse-grained. >Reporter: Steven Ruppert >Priority: Major > Labels: bulk-closed > Attachments: cs.executor.log, stack.txt > > > Running what I believe to be a fairly vanilla spark job, using the RDD api, > with several shuffles, a cached RDD, and finally a conversion to DataFrame to > save to parquet. I get a repeatable deadlock at the very last reducers of one > of the stages. > Roughly: > {noformat} > "Executor task launch worker-6" #56 daemon prio=5 os_prio=0 > tid=0x7fffd88d3000 nid=0x1022b9 waiting for monitor entry > [0x7fffb95f3000] >java.lang.Thread.State: BLOCKED (on object monitor) > at > org.apache.spark.broadcast.TorrentBroadcast$$anonfun$readBroadcastBlock$1.apply(TorrentBroadcast.scala:207) > - waiting to lock <0x0005445cfc00> (a > org.apache.spark.broadcast.TorrentBroadcast$) > at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1269) > at > org.apache.spark.broadcast.TorrentBroadcast.readBroadcastBlock(TorrentBroadcast.scala:206) > at > org.apache.spark.broadcast.TorrentBroadcast._value$lzycompute(TorrentBroadcast.scala:66) > - locked <0x0005b12f2290> (a > org.apache.spark.broadcast.TorrentBroadcast) > at > org.apache.spark.broadcast.TorrentBroadcast._value(TorrentBroadcast.scala:66) > at > org.apache.spark.broadcast.TorrentBroadcast.getValue(TorrentBroadcast.scala:96) > at org.apache.spark.broadcast.Broadcast.value(Broadcast.scala:70) > at > org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:86) > at > org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:53) > at org.apache.spark.scheduler.Task.run(Task.scala:99) > at > org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:282) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) > at java.lang.Thread.run(Thread.java:745) > {noformat} > and > {noformat} > "Executor task launch worker-5" #55 daemon prio=5 os_prio=0 > tid=0x7fffd88d nid=0x1022b8 in Object.wait() [0x7fffb96f4000] >java.lang.Thread.State: WAITING (on object monitor) > at java.lang.Object.wait(Native Method) > at java.lang.Object.wait(Object.java:502) > at > org.apache.spark.storage.BlockInfoManager.lockForReading(BlockInfoManager.scala:202) > - locked <0x000545736b58> (a > org.apache.spark.storage.BlockInfoManager) > at > org.apache.spark.storage.BlockManager.getLocalValues(BlockManager.scala:444) > at > org.apache.spark.broadcast.TorrentBroadcast$$anonfun$readBroadcastBlock$1.apply(TorrentBroadcast.scala:210) > - locked <0x0005445cfc00> (a > org.apache.spark.broadcast.TorrentBroadcast$) > at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1269) > at > org.apache.spark.broadcast.TorrentBroadcast.readBroadcastBlock(TorrentBroadcast.scala:206) > at > org.apache.spark.broadcast.TorrentBroadcast._value$lzycompute(TorrentBroadcast.scala:66) > - locked <0x00059711eb10> (a > org.apache.spark.broadcast.TorrentBroadcast) > at > org.apache.spark.broadcast.TorrentBroadcast._value(TorrentBroadcast.scala:66) > at > org.apache.spark.broadcast.TorrentBroadcast.getValue(TorrentBroadcast.scala:96) > at org.apache.spark.broadcast.Broadcast.value(Broadcast.scala:70) > at > org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:86) > at > org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:53) > at org.apache.spark.scheduler.Task.run(Task.scala:99) > at > org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:282) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) > at java.lang.Thread.run(Thread.java:745) > {noformat} > A full stack trace is attached, but those seem to be the offending threads. > This happens across several different executors, and has
[jira] [Updated] (SPARK-19870) Repeatable deadlock on BlockInfoManager and TorrentBroadcast
[ https://issues.apache.org/jira/browse/SPARK-19870?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Eyal Farago updated SPARK-19870: Attachment: cs.executor.log > Repeatable deadlock on BlockInfoManager and TorrentBroadcast > > > Key: SPARK-19870 > URL: https://issues.apache.org/jira/browse/SPARK-19870 > Project: Spark > Issue Type: Bug > Components: Block Manager, Shuffle >Affects Versions: 2.0.2, 2.1.0 > Environment: ubuntu linux 14.04 x86_64 on ec2, hadoop cdh 5.10.0, > yarn coarse-grained. >Reporter: Steven Ruppert >Priority: Major > Attachments: cs.executor.log, stack.txt > > > Running what I believe to be a fairly vanilla spark job, using the RDD api, > with several shuffles, a cached RDD, and finally a conversion to DataFrame to > save to parquet. I get a repeatable deadlock at the very last reducers of one > of the stages. > Roughly: > {noformat} > "Executor task launch worker-6" #56 daemon prio=5 os_prio=0 > tid=0x7fffd88d3000 nid=0x1022b9 waiting for monitor entry > [0x7fffb95f3000] >java.lang.Thread.State: BLOCKED (on object monitor) > at > org.apache.spark.broadcast.TorrentBroadcast$$anonfun$readBroadcastBlock$1.apply(TorrentBroadcast.scala:207) > - waiting to lock <0x0005445cfc00> (a > org.apache.spark.broadcast.TorrentBroadcast$) > at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1269) > at > org.apache.spark.broadcast.TorrentBroadcast.readBroadcastBlock(TorrentBroadcast.scala:206) > at > org.apache.spark.broadcast.TorrentBroadcast._value$lzycompute(TorrentBroadcast.scala:66) > - locked <0x0005b12f2290> (a > org.apache.spark.broadcast.TorrentBroadcast) > at > org.apache.spark.broadcast.TorrentBroadcast._value(TorrentBroadcast.scala:66) > at > org.apache.spark.broadcast.TorrentBroadcast.getValue(TorrentBroadcast.scala:96) > at org.apache.spark.broadcast.Broadcast.value(Broadcast.scala:70) > at > org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:86) > at > org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:53) > at org.apache.spark.scheduler.Task.run(Task.scala:99) > at > org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:282) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) > at java.lang.Thread.run(Thread.java:745) > {noformat} > and > {noformat} > "Executor task launch worker-5" #55 daemon prio=5 os_prio=0 > tid=0x7fffd88d nid=0x1022b8 in Object.wait() [0x7fffb96f4000] >java.lang.Thread.State: WAITING (on object monitor) > at java.lang.Object.wait(Native Method) > at java.lang.Object.wait(Object.java:502) > at > org.apache.spark.storage.BlockInfoManager.lockForReading(BlockInfoManager.scala:202) > - locked <0x000545736b58> (a > org.apache.spark.storage.BlockInfoManager) > at > org.apache.spark.storage.BlockManager.getLocalValues(BlockManager.scala:444) > at > org.apache.spark.broadcast.TorrentBroadcast$$anonfun$readBroadcastBlock$1.apply(TorrentBroadcast.scala:210) > - locked <0x0005445cfc00> (a > org.apache.spark.broadcast.TorrentBroadcast$) > at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1269) > at > org.apache.spark.broadcast.TorrentBroadcast.readBroadcastBlock(TorrentBroadcast.scala:206) > at > org.apache.spark.broadcast.TorrentBroadcast._value$lzycompute(TorrentBroadcast.scala:66) > - locked <0x00059711eb10> (a > org.apache.spark.broadcast.TorrentBroadcast) > at > org.apache.spark.broadcast.TorrentBroadcast._value(TorrentBroadcast.scala:66) > at > org.apache.spark.broadcast.TorrentBroadcast.getValue(TorrentBroadcast.scala:96) > at org.apache.spark.broadcast.Broadcast.value(Broadcast.scala:70) > at > org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:86) > at > org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:53) > at org.apache.spark.scheduler.Task.run(Task.scala:99) > at > org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:282) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) > at java.lang.Thread.run(Thread.java:745) > {noformat} > A full stack trace is attached, but those seem to be the offending threads. > This happens across several different executors, and has persisted through > several runs of
[jira] [Updated] (SPARK-19870) Repeatable deadlock on BlockInfoManager and TorrentBroadcast
[ https://issues.apache.org/jira/browse/SPARK-19870?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Steven Ruppert updated SPARK-19870: --- Attachment: stack.txt stacktrace of a single executor process during deadlock > Repeatable deadlock on BlockInfoManager and TorrentBroadcast > > > Key: SPARK-19870 > URL: https://issues.apache.org/jira/browse/SPARK-19870 > Project: Spark > Issue Type: Bug > Components: Block Manager, Shuffle >Affects Versions: 2.0.2, 2.1.0 > Environment: ubuntu linux 14.04 x86_64 on ec2, hadoop cdh 5.10.0, > yarn coarse-grained. >Reporter: Steven Ruppert > Attachments: stack.txt > > > Running what I believe to be a fairly vanilla spark job, using the RDD api, > with several shuffles, a cached RDD, and finally a conversion to DataFrame to > save to parquet. I get a repeatable deadlock at the very last reducers of one > of the stages. > Roughly: > {noformat} > "Executor task launch worker-6" #56 daemon prio=5 os_prio=0 > tid=0x7fffd88d3000 nid=0x1022b9 waiting for monitor entry > [0x7fffb95f3000] >java.lang.Thread.State: BLOCKED (on object monitor) > at > org.apache.spark.broadcast.TorrentBroadcast$$anonfun$readBroadcastBlock$1.apply(TorrentBroadcast.scala:207) > - waiting to lock <0x0005445cfc00> (a > org.apache.spark.broadcast.TorrentBroadcast$) > at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1269) > at > org.apache.spark.broadcast.TorrentBroadcast.readBroadcastBlock(TorrentBroadcast.scala:206) > at > org.apache.spark.broadcast.TorrentBroadcast._value$lzycompute(TorrentBroadcast.scala:66) > - locked <0x0005b12f2290> (a > org.apache.spark.broadcast.TorrentBroadcast) > at > org.apache.spark.broadcast.TorrentBroadcast._value(TorrentBroadcast.scala:66) > at > org.apache.spark.broadcast.TorrentBroadcast.getValue(TorrentBroadcast.scala:96) > at org.apache.spark.broadcast.Broadcast.value(Broadcast.scala:70) > at > org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:86) > at > org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:53) > at org.apache.spark.scheduler.Task.run(Task.scala:99) > at > org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:282) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) > at java.lang.Thread.run(Thread.java:745) > {noformat} > and > {noformat} > "Executor task launch worker-5" #55 daemon prio=5 os_prio=0 > tid=0x7fffd88d nid=0x1022b8 in Object.wait() [0x7fffb96f4000] >java.lang.Thread.State: WAITING (on object monitor) > at java.lang.Object.wait(Native Method) > at java.lang.Object.wait(Object.java:502) > at > org.apache.spark.storage.BlockInfoManager.lockForReading(BlockInfoManager.scala:202) > - locked <0x000545736b58> (a > org.apache.spark.storage.BlockInfoManager) > at > org.apache.spark.storage.BlockManager.getLocalValues(BlockManager.scala:444) > at > org.apache.spark.broadcast.TorrentBroadcast$$anonfun$readBroadcastBlock$1.apply(TorrentBroadcast.scala:210) > - locked <0x0005445cfc00> (a > org.apache.spark.broadcast.TorrentBroadcast$) > at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1269) > at > org.apache.spark.broadcast.TorrentBroadcast.readBroadcastBlock(TorrentBroadcast.scala:206) > at > org.apache.spark.broadcast.TorrentBroadcast._value$lzycompute(TorrentBroadcast.scala:66) > - locked <0x00059711eb10> (a > org.apache.spark.broadcast.TorrentBroadcast) > at > org.apache.spark.broadcast.TorrentBroadcast._value(TorrentBroadcast.scala:66) > at > org.apache.spark.broadcast.TorrentBroadcast.getValue(TorrentBroadcast.scala:96) > at org.apache.spark.broadcast.Broadcast.value(Broadcast.scala:70) > at > org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:86) > at > org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:53) > at org.apache.spark.scheduler.Task.run(Task.scala:99) > at > org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:282) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) > at java.lang.Thread.run(Thread.java:745) > {noformat} > A full stack trace is attached, but those seem to be the offending threads. > This happens across several different executors, and has persisted through >