The halfway house is, strictly speaking, the valid choice.
If we are really brave and drop the database name prefix then we should also do it for all the other dbsources (Ensembl, Uniprot, EMBL, etc). I think we should be brave [😝] ! See: http://issues.jalview.org/browse/JAL-2203 ________________________________ From: jalview-dev-boun...@jalview.org <jalview-dev-boun...@jalview.org> on behalf of Mungo Carstairs (Staff) <g.m.carsta...@dundee.ac.uk> Sent: 16 September 2016 12:33:00 To: jalview-dev@jalview.org Subject: [Jalview-dev] PDB sequence naming Shall I comment out lines 178-179 of ws.dbsources.Pdb? That would mean getting a sequence name like 4WV3|A instead of PDB|4wv3|4WV3|A or do we want the half-way house PDB|4WV3|A mungo Mungo Carstairs Jalview Computational Scientist The Barton Group Division of Computational Biology School of Life Sciences University of Dundee, Dundee, Scotland, UK. www.jalview.org<http://www.jalview.org/> www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk/> The University of Dundee is a registered Scottish Charity, No: SC015096 The University of Dundee is a registered Scottish Charity, No: SC015096
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