Re: [Jmol-developers] loading PQR files vs. PDB

2010-11-10 Thread Angel Herráez
Ok, thanks, Bob So it seems that PQR exported from Pymol lacks these fields (I don't think that my colleague removed anything on purpose) Regards -- The Next 800 Companies to Lead America's Growth: New Video Whitepaper

Re: [Jmol-developers] loading PQR files vs. PDB

2010-11-09 Thread Robert Hanson
private final static String[] pqrLineStartRecords = { "Pqr", "REMARK 1 PQR" }; Jmol is expecting: REMARK 1 PQR file generated by PDB2PQR (Version 1.1.2) REMARK 1 REMARK 1 Forcefield Used: AMBER REMARK 1 REMARK 5 REMARK 6 Total charge on this protein: 4. e So lacking that, y

[Jmol-developers] loading PQR files vs. PDB

2010-11-09 Thread Angel Herráez
Dear Bob, Yesterday I had to work with a PQR file. I knew that Jmol opens them, but it seems that it was being interpreted as pdb (the partial charges were not right) When I loaded using load "pqr::xxx.pqr" to force the format, ir came out good. So my question is: how is the reader in Jmol dec