Re: [Jmol-developers] Bug in JSmol-JSme integration

2014-09-09 Thread Johannes | edumol.fi
New bug in the latest release: http://chemapps.stolaf.edu/jmol/jsmol/jsmetest.htm If I search a new molecule on the 2D-side, it wont't update it to the 3D-side. jsmetest2.html http://chemapps.stolaf.edu/jmol/jsmol/jsmetest2.htm works correctly. On 8.9.2014 15:53, edu...@edumol.fi wrote:

Re: [Jmol-developers] Bug in JSmol-JSme integration

2014-09-09 Thread Robert Hanson
I noticed that. Thanks for pointing it out. Let me know if you figure out what is happening there. On Tue, Sep 9, 2014 at 12:49 AM, Johannes | edumol.fi edu...@edumol.fi wrote: New bug in the latest release: http://chemapps.stolaf.edu/jmol/jsmol/jsmetest.htm If I search a new molecule on

Re: [Jmol-developers] Measurement bug?

2014-09-09 Thread Herman Bergwerf
You mean you can't reproduce the issue? 2014-09-09 1:17 GMT+02:00 Robert Hanson hans...@stolaf.edu: Nope, I thought I had it, but I can't do it now. What's the trick? On Mon, Sep 8, 2014 at 6:03 PM, Robert Hanson hans...@stolaf.edu wrote: sure, I see. I can fix that... On Mon, Sep 8,

[Jmol-developers] chainCaseSensitive is forced true in 14.3.7

2014-09-09 Thread Angel Herráez
in 14.3.7_2014.09.08b chainCaseSensitive is being ignored and acts as true That is, load =1crn select *:a //0 atoms selected select *:A // 327 atoms selected irrespective of the setting of chainCaseSensitive --

Re: [Jmol-developers] chainCaseSensitive is forced true in 14.3.7

2014-09-09 Thread Angel Herráez
There is also a problem with numeric chain IDs: load =1LMB; select *:1; //selects chains 1 and 2 select *:2; // same atoms select *:3; //selects chains 3 and 4 select *:4; // same atoms I notice that hover display quotes around the ID, like [DG]37:2.O3' so I tried select *:1

[Jmol-developers] cartoon for Calpha-only is broken

2014-09-09 Thread Angel Herráez
in 14.3.7_2014.09.08b cartoon is broken for Calpha-only files It used to render cartoons, now it just renders trace load =1LMB cartoon only // ok for dna, not for protein -- Want excitement? Manually upgrade your

Re: [Jmol-developers] cartoon for Calpha-only is broken

2014-09-09 Thread Angel Herráez
sorry, that's not Calpha-only But the problem is present --now I don't know the reason -- Want excitement? Manually upgrade your production database. When you want reliability, choose Perforce. Perforce version

Re: [Jmol-developers] cartoon for Calpha-only is broken

2014-09-09 Thread Robert Hanson
This relates to the chain case issue as well. Jmol is set to force case sensitivity if it finds (a) chain designations of more than one character or (b) ones with lower case. Unfortunately, it was considering 1 to be lower case. In addition to that, the chain read from then HELIX record was not

Re: [Jmol-developers] Measurement bug?

2014-09-09 Thread Robert Hanson
I can't reproduce the issue. Thought I could, but now I can't. Possibly had something to do with whether I was holding keys down after clicking (press+release) or just pressing. On Tue, Sep 9, 2014 at 9:24 AM, Herman Bergwerf hermanbergw...@gmail.com wrote: You mean you can't reproduce the

Re: [Jmol-developers] Measurement bug?

2014-09-09 Thread Herman Bergwerf
It has nothing to do with keys. Just hold a mousebutton and drag (the dotted line should disappear when you drag) You can also use: http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm (right mouse button menu Measurements ...) Real world example: You start an angle measurement. You want to rotate

Re: [Jmol-developers] Measurement bug?

2014-09-09 Thread Robert Hanson
The normal, designed response is that any dragging of the model during a measurement terminates the pending measurement. You must start again. If that is all the problem is, then that's by design. If the problem is that you lose some control over a pending measurement but it continues to be in