Bob Hanson schrieb:
The trick to updating the menu is to use the frame command. If you only
have one frame, just add this:
frame 0
and the menu will be updated to enable isosurface mapping of MEP
Bob
frame Reinhold Stoermann wrote:
Hello to all,
I just joined this list,
Here you go!
Original Message
Subject:Call for Papers: Modeling symposium at Fall ACS meeting
Date: Thu, 14 Feb 2008 20:20:56 -0500
From: Lisa Bell-Loncella [EMAIL PROTECTED]
Reply-To: Chemistry Education Discussion List [EMAIL PROTECTED]
Organization:
Hello again,
as far as I have seen from the jmol documentation there is no support
for coloring a molecular surface according the molecular lipophilic
potential (MLP).
Chime provided a method to do that, probably by assigning a
lipophilicity value to each atom, but I'm ignorant of the detail
Reinhold, I remember this was raised some times before, and Jmol does
not have that support.
The problem is knowing how the lipophilicity potential is calculated,
and that's likely impossible to find out for Chime.
I'm not sure now if RasMol has this too. That's open source and could
be taken
Hi Mauricio,
if you don't want to add additional information to the image (like we do
at our site) you can send back the decoded image also directly. Just replace
Content-type: text/html\n\n
by
Content-type: image/jpeg\n\n
and then print the image data instead of the IMG tag with
Mauricio, thanks for sharing. I'll add that to the Wiki so we don't
loose it.
I've found what looks like another solution using PHP rather than
Perl:
http://dean.edwards.name/weblog/2005/06/base64-ie/
-
This SF.net
Sorry I cannot help directly, but there was a recent discussion on either this
list or the developers, regarding Java 1.7 givng trouble
So maybe it's not a 64bit issue, but a Java one.
Search the lists (they are linked from Jmol home webpage)
HTH
I can cofirm Eric's observation. The problem is with 0% Y
Same happens with 100% X, and it is no longer right-flushed, the text goes
outside the panel even at 95% X. Maybe it's not wrong positioning, but
wrong justification?
It is OK in 11.4.RC5
Both 11.5.7 and 1.5.6 fail
Dear Bob,
I know you'll have way too much but here are some ideas.
At 2/15/08, you wrote:
Q: What new features would you include?
Maybe not the newest, but dramatic in a presention:
Surfaces, cavities, and molecular orbitals.
Animations.
You might mention that Nature now links every new
Correction to previous email. Second example should be 2DHB
http://www.rcsb.org/pdb/files/2DBH.pdb
-Original Message-
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of Li Yang
Sent: Friday, February 15, 2008 5:25 PM
To: jmol-users@lists.sourceforge.net
Subject: [Jmol-users]
Reinhold Stoermann wrote:
Hello again,
as far as I have seen from the jmol documentation there is no support
for coloring a molecular surface according the molecular lipophilic
potential (MLP).
Chime provided a method to do that, probably by assigning a
lipophilicity value to each atom, but
The following script worked in previous Jmol applet versions (I'm not
sure exactly how long ago):
set echo viewNumber 0% 0%;
font echo 16 sans bold;
color echo [xCC];
echo Now Showing View 1
Now, in 11.5.7, the echo is out of view, invisible, below the bottom
of the Jmol viewport.
If,
Hi,
I am using Jmol 11.4.RC5 version of desktop application, and get wrong
number of chains ( and polymers) for PDB molecules. Here are two
examples:
Open Jmol application, click on File-Open URL, type
http://www.rcsb.org/pdb/files/1UBI.pdb
From the popup menu, it displayed 1UBI-Chains: 2. But
Hi Bob,
You've got any easy job, so much great new stuff! The problem is to
pick the best!
I'd be pleased if you chose to highlight any of the examples from
ChemTube3D.com which are all beneficiaries of recent developments.
I'll try and assist by picking out some of my favourites:
3D
If I remember correctly, Jmol reads atoms without any chain ID as an extra
chain.
This can be questioned, but that's the way it works now
-
This SF.net email is sponsored by: Microsoft
Defy all challenges. Microsoft(R)
On Feb 15, 2008 9:35 PM, Angel Herráez [EMAIL PROTECTED] wrote:
Sorry I cannot help directly, but there was a recent discussion on either this
list or the developers, regarding Java 1.7 givng trouble
So maybe it's not a 64bit issue, but a Java one.
Search the lists (they are linked from Jmol
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