[Jmol-users] Jmol in BioHealthBase

Just found Jmol running on a nice Web site here: http://www.biohealthbase.org/ tim -- earth:usa:virginia:blacksburg I am behindtherabbit: del.icio.us | last.fm | mojo | twitter | www | brightkite - This SF.net email is

Re: [Jmol-users] pseudo atoms in an SD file

Hi Rajarshi 1. The standard element-id for unknown atoms in Jmol is Xx. You may use that and select them successfully using e.g. select _Xx (I've had some trouble with this syntax before, but don't remember the final solution; I may search and dig it up if you need so) 2. I'd bet (but

Re: [Jmol-users] pseudo atoms in an SD file

I stand corrected. It seems that in my previous message I was dreaming; a quick test shows that, since MOL format only includes element symbol (and not atom ID as in PDB), Jmol just converts anything not matching a known element symbol into Xx. So, you cannot use R as a symbol. BTW, you

Re: [Jmol-users] pseudo atoms in an SD file

version=11.5.39_dev # bug fix: select _Xx; select unknown Note that, as for other elements, color _Xx green persists past a file load. Angel Herráez wrote: I stand corrected. It seems that in my previous message I was dreaming; a quick test shows that, since MOL format only includes