Hi Angel
> How about
> jmolScript("var myJmolVar = " + myJSvar)
>
> that would pass the value to the 'myJmolVar' variable in JmolScript.
> Or do you need something more complicated that just getting the variable?
This is great! It's exactly what I want and much simpler than I thought.
Thanks an
I'm pretty sure it does :
You can sync scripts so that you when send a script to one applet, this applet
sends it to the other target applets.
-Paul
Le 25 mars 2011 à 22:28, Angel Herráez a écrit :
> Thanks to both
>
> @Paul:
> > have you ventured the sync command ?
>
> Haven't tried that. I a
On Fri, Mar 25, 2011 at 4:18 PM, Yingjie Lin wrote:
> Hi Bob,
>
> Your answer is very thorough. My problem is solved. More importantly, I
> learned a lot from your solutions. Thank you!
>
>
you are welcome.
> Two side questions:
> 1. when replying to a thread, does the title of my email matter?
Hi Yingjie,
Yes, on this list one can really learn a lot about JmolScripting and
combining this with other web techniques.
On Fri, Mar 25, 2011 at 15:18, Yingjie Lin wrote:
> Hi Bob,
>
> Your answer is very thorough. My problem is solved. More importantly, I
> learned a lot from your solutions.
Yingjie, I think it's easier
> I have a variable X in JavaScript, and I am looking for a way to pass it back
> to Jmol.
How about
jmolScript("var myJmolVar = " + myJSvar)
that would pass the value to the 'myJmolVar' variable in JmolScript.
Or do you need something more complicated that just
Hi Bob,
Your answer is very thorough. My problem is solved. More importantly, I learned
a lot from your solutions. Thank you!
Two side questions:
1. when replying to a thread, does the title of my email matter? For example,
should I use "Re: Jmol-users Digest, Vol 58, Issue 33" or "Re: jmolEva
Thanks to both
@Paul:
> have you ventured the sync command ?
Haven't tried that. I am not confident with sync. And this is for a checkbox
that defines some
atom sets and applies some styles. I'm not sure sync does anything on that.
@Bob:
> I think you could tweak the JavaScript to ignore one
Dear Jmolers,
I have a variable X in JavaScript, and I am looking for a way to pass it back
to Jmol. I did
my homework and found that
save javascript:functionCall()
might be what I need. However, I couldn't figure out how this should be used in
Jmol. For
example, where to place this express
I think you could tweak the JavaScript to ignore one. This is on a
particular page, right? One you know the IDs for?
_jmol.appletsExcludeFromAll = ";1;4;"
function jmolScript(script, targetSuffix) {
if (script) {
_jmolCheckBrowser();
if (targetSuffix == "all") {
with (_jmol) {
have you ventured the sync command ?
http://chemapps.stolaf.edu/jmol/docs/#sync
-Paul
Le 25 mars 2011 à 21:44, Angel Herráez a écrit :
> Hi all
>
> I'd like to use jmolSetTarget() to target two applets but not a third one.
>
> I started using "all" as the parameter when I only had 2 applets in
Hi all
I'd like to use jmolSetTarget() to target two applets but not a third one.
I started using "all" as the parameter when I only had 2 applets in the page,
but after adding
the 3rd one I'm stuck.
Any solutions?
Thanks
-
'fraid not.
On Fri, Mar 25, 2011 at 2:45 PM, Andreas Prlic wrote:
> I see. Any chance to be able to influence the color for the frank in
> this case? The red clashes with my other color choices...
>
> Thanks,
> Andreas
>
> On Fri, Mar 25, 2011 at 12:34 PM, Robert Hanson
> wrote:
> > yes, that's
I see. Any chance to be able to influence the color for the frank in
this case? The red clashes with my other color choices...
Thanks,
Andreas
On Fri, Mar 25, 2011 at 12:34 PM, Robert Hanson wrote:
> yes, that's right. A bit of a security feature -- I want to know if the
> applet I'm looking at
Oh, also, I think I'm finally up to date at
http://chemapps.stolaf.edu/jmol/docs/examples-12/new.htm
On Fri, Mar 25, 2011 at 2:42 PM, Robert Hanson wrote:
> Here's a preview of the presentation I'm making in Anaheim at the ACS
> meeting on Monday:
>
> http://stolaf.edu/depts/chemistry/bh/acs201
Here's a preview of the presentation I'm making in Anaheim at the ACS
meeting on Monday:
http://stolaf.edu/depts/chemistry/bh/acs2011/acs-03-2011-jmolModelKit.ppt
It's all about modelKit mode and Otis Rothenberger's/Tom Newton's amazing
web site http://chemagic.com/web_molecules
Thank you, Nico
yes, that's right. A bit of a security feature -- I want to know if the
applet I'm looking at is signed or not.
On Fri, Mar 25, 2011 at 12:34 PM, Andreas Prlic wrote:
> Hi,
>
> I was just playing around with turning the "frank" of Jmol off. It
> seems it currently can be turned off in the unsign
Hi,
I was just playing around with turning the "frank" of Jmol off. It
seems it currently can be turned off in the unsigned version of the
applet, but not in the signed version (both 12.0.37). Is this the
expected behavior?
Thanks,
Andreas
Here you go:
var atomList = {46:A.ca}
var n = atomList.length
for (var i = 2; i <= n; i++) {
measure @{atomList[1]} @{atomList[i]}
}
Bob
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-310
Michael, my reading of that discussion is that you have access to all the
normal objects and functions on the page, just like normal HTML in a
browser. So there should be no need to futz with other objects. You just
have to experiment a bit and see what you can find. This page uses Jmol.js,
right?
Ok, I'll look into the i/o via JavaScript functions.
That immediately leads to the question of how to obtain a list of
available functions and their parameters/formats, etc.
VB - WebBrowser - Page elements - JS functions - Jmol commands ?
I'm a bit fuzzy on the line of events (and exact format
So what I am trying to do is the following: I have a native structure plus a
variable number of homology models. I want to measure all the distances
between a certain residue in the native structure, to its corresponding
residue in each model.
Instead of:
measure (1.1 and 46:A.ca) (not 1.1 and 46:
Yingji,
>> How can I make sure that it's labeled?
Ah, right. OK, if I have this right, you have a box and only the atoms in
the box are visible. Some groups are totally in the box, some are only
partially in the box, such that the alpha carbon is in the box, and thus
visible, and some are only p
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