Re: [Jmol-users] individual atom color

2016-06-07 Thread Otis Rothenberger
Oops... This is the more complete version of that color link: http://jmol.sourceforge.net/jscolors/ Otis -- Otis Rothenberger o...@chemagic.org http://chemagic.org > On Jun 7, 2016, at 8:58 AM, Otis Rothenberger wrote: > > Km, > > Providing that Jmol is reading those partial charges, you ca

Re: [Jmol-users] individual atom color

2016-06-07 Thread Otis Rothenberger
Km, Providing that Jmol is reading those partial charges, you can use the following script: color {*} partialCharge If Jmol does not read the charges in an XYZ, MMFF94 charges can be calculated. The script becomes; calculate partialCharge; color {*} partialCharge With the above, I think you

[Jmol-users] individual atom color

2016-06-07 Thread Krishna Mohan
Dear list In order to color different partial charges for each and every atoms in a XYZ file (, as shown in the below format) . . . atom x y z . . . I would like to know, how a jmol script can be written to assign a particular color for Each atom ? I.e., suppose if I have 2 atoms, how can I