[Jmol-users] check R/S chirality with Jmol

2017-04-06 Thread Robert Hanson
* Download Jmol-14.12.0-binary.zip (69.3 MB) * *Jmol now allows checking of R/S chirality. For example:* load $(R)-glycidol print {C1}.chirality *R* load $cholesterol select on chirality != "" label %[chirality] *8

Re: [Jmol-users] Cahn-Ingold-Prelog priority rules

2017-04-06 Thread Robert Hanson
This is done. Jmol.___JmolVersion="14.12.0" // 2017-04-06 new feature: {atom}.chirality -- uses Cohen-Ingold-Prelog rules to assign R or S to a carbon center -- ignores sulfur chirality -- may not fully implement high symmetry cases -- not fully tested -- Checked using: function

Re: [Jmol-users] Java support in browsers

2017-04-06 Thread Eric Martz
Correction: On 4/6/17 5:58 PM, Eric Martz wrote: > Windows 10: Firefox ESR, Pale Moon, Seamonkey, Maxthon (but see > caution about data sent to China by Maxthon at above link). I can't > test Waterfox because I don't have 64-bit Windows. The correction is that Firefox ESR in Windows runs both

Re: [Jmol-users] Java support in browsers

2017-04-06 Thread Eric Martz
Thanks, Henry! I did not know about unchecking "Run in safe mode" (hidden unless you hold down the option key). After doing that, I can run Jmol_S Java applet from local files (FirstGlance in Jmol) in Safari, which is convenient for testing while developing. We list browsers that still

Re: [Jmol-users] Cahn-Ingold-Prelog priority rules

2017-04-06 Thread Pierluigi Quagliotto
Dear Bob, many thanks for your answer. I had a look to the paper, but it is very concise, so I would be in doubt about how to proceed. If we (I and a young fellowship who should help me for the site in next months) can envisage what (and how to do) we will let you know some more. Obviously,

Re: [Jmol-users] Cahn-Ingold-Prelog priority rules

2017-04-06 Thread Robert Hanson
On Thu, Apr 6, 2017 at 2:20 AM, Pierluigi Quagliotto < pierluigi.quaglio...@unito.it> wrote: > Dear All, > > I prepared a page for students (on my developing server: > http://5.135.186.232/STdM/index.php/it/esercizi/ > esercitarsi-sulla-chiralita), > in which they can: > > 1) write down an