[Jmol-users] Jmol read/write rights

2006-03-24 Thread Tjaart de Beer
uire Apache rule rewrites and I want to avoid going that way if possible... Any suggestions would be more than welcome! -- Tjaart de Beer - The software required "Windows XP or better" ... so I installed Linux --- This S

[Jmol-users] Re: Loading an pdb file from a url

2006-01-20 Thread Tjaart de Beer
can just write a Java class to retrieve the file from the PDB and post it as an object to the JSP page which hosts Jmol (or as a Stream object). I will keep everyone updated as to the progress. Any suggestions are always welcome! -- Tjaart de Beer Bioinformatics and Computational Biology Unit

[Jmol-users] Loading an pdb file from a url

2006-01-09 Thread Tjaart de Beer
e an error saying "bad URL" but if I open up the link in Firefox I see the physical pdb file. The idea is to allow the user to type in a pdb file code which will then be automatically loaded. Any ideas? Thanks for any suggestions! -- Tjaart de Beer University of Pretoria Lynwood rd P

[Jmol-users] Jmol documentation

2005-06-07 Thread Tjaart de Beer
Hi Are the Jmol documentation available as PDF (the scripting as well as the development docs)? Thanks!! -- Tjaart de Beer Bioinformatics and Computational Biology Unit Department Biochemistry FABI Square/Bioinformatics building Faculty of Natural Sciences University of Pretoria Lynwood rd

[Jmol-users] Embedding Jmol Solution

2005-06-07 Thread Tjaart de Beer
. Thanks again!! -- Tjaart de Beer Bioinformatics and Computational Biology Unit Department Biochemistry FABI Square/Bioinformatics building Faculty of Natural Sciences University of Pretoria Lynwood rd Pretoria South Africa 0001 Tel:+27 12 420 5802 Cell: +27 83 504 7914 Fax:+27 1

[Jmol-users] Embedding Jmol

2005-06-06 Thread Tjaart de Beer
nt) as JSP pages. Thus the HTML is generated by a jsp page and displayed by a Tomcat server. I have tried to place the required Jmol files in all places mentioned in the docs (Tomcat and Jmol) but no success. Any ideas on where Jmol and its files must be for this to work? Thanks!! -- Tjaa

[Jmol-users] Making animations

2005-05-10 Thread Tjaart de Beer
the delimiters between consecutive protein stuctures in a .pdb file be? Thanks!! -- Tjaart de Beer Bioinformatics and Computational Biology Unit Department Biochemistry FABI Square/Bioinformatics building Faculty of Natural Sciences University of Pretoria Lynwood rd Pretoria South Africa 0001 Tel