so is it still causing that problem? I can't see how IOException can
be an unknown value
On Mon, Dec 15, 2008 at 10:43 AM, Rolf Huehne wrote:
> Robert Hanson wrote:
>> Rolf, please check now. I have no idea about the IOException problem.
>> What an odd error. I'm certainly not having that issue -
Robert Hanson wrote:
> Rolf, please check now. I have no idea about the IOException problem.
> What an odd error. I'm certainly not having that issue -- you might
> need to do a clean build.
>
I always do a cleanup before compiling Jmol ("ant clean; ant").
Regards,
Rolf
-
Rolf, please check now. I have no idea about the IOException problem.
What an odd error. I'm certainly not having that issue -- you might
need to do a clean build.
The problem with -w should be fixed. The problem was that I changed
the way the -x option works, so that it just appends ";exitJmol" t
Robert Hanson wrote:
> I think this is all fixed now. The sequence of execution is:
>
> file load
> -J (Jmol script as argument)
> -s (script file name as argument)
> -j (Jmol script as argument)
> -x (exit)
>
> The -n switch (no display) adds an implicit -x, and it is executed
> only after the f
I think this is all fixed now. The sequence of execution is:
file load
-J (Jmol script as argument)
-s (script file name as argument)
-j (Jmol script as argument)
-x (exit)
The -n switch (no display) adds an implicit -x, and it is executed
only after the final script is run. Basically what the -x
[EMAIL PROTECTED] wrote:
> Quoting Robert Hanson <[EMAIL PROTECTED]>:
>
>> Rolf, will this cause any real problem? You just need to add load
>> \"...\"; at the beginning of your -j script.
>>
>> the command line parser -- presumably standard Java -- does not accept
>> quoted strings as values for
Quoting Robert Hanson <[EMAIL PROTECTED]>:
> Rolf, will this cause any real problem? You just need to add load
> \"...\"; at the beginning of your -j script.
>
> the command line parser -- presumably standard Java -- does not accept
> quoted strings as values for -x flags. Quoted strings are left
Rolf, will this cause any real problem? You just need to add load
\"...\"; at the beginning of your -j script.
the command line parser -- presumably standard Java -- does not accept
quoted strings as values for -x flags. Quoted strings are left as
arguments. Maybe someone can tell me how to do it
Quoting Robert Hanson <[EMAIL PROTECTED]>:
> right - you get one or the other, not both. You must either specify a
> file or specify a script. You can't do both.
> The -j option officially reads:
>
> -j,--jmolscript quoted argument is Jmol script to execute
>
> So if you need to spec
right - you get one or the other, not both. You must either specify a
file or specify a script. You can't do both.
The -j option officially reads:
-j,--jmolscript quoted argument is Jmol script to execute
So if you need to specify a file, you have to specify that you want to
load it
Robert Hanson wrote:
> this is fixed.
>
> On Wed, Dec 3, 2008 at 9:28 AM, Rolf Huehne <[EMAIL PROTECTED]> wrote:
>> Robert Hanson wrote:
>>> great -- so let me know if that doesn't work for you.
>>>
>> It looks as if "-j" doesn't work properly (version 11.6.3 and SVN
>> revision 10421).
>>
>> When
this is fixed.
On Wed, Dec 3, 2008 at 9:28 AM, Rolf Huehne <[EMAIL PROTECTED]> wrote:
> Robert Hanson wrote:
>> great -- so let me know if that doesn't work for you.
>>
> It looks as if "-j" doesn't work properly (version 11.6.3 and SVN
> revision 10421).
>
> When I try to set a variable within th
Robert Hanson wrote:
> great -- so let me know if that doesn't work for you.
>
It looks as if "-j" doesn't work properly (version 11.6.3 and SVN
revision 10421).
When I try to set a variable within the "-j" command Jmol tries to find
a file with that name:
-j "test_var=true;"
Error message:
great -- so let me know if that doesn't work for you.
On Wed, Dec 3, 2008 at 8:30 AM, Rolf Huehne <[EMAIL PROTECTED]> wrote:
> Robert Hanson wrote:
>> I guess I don't understand the problem. What's wrong with doing just -j with
>>
>>
>> Jmol -j "some global settings here;script ;script ;sc
Robert Hanson wrote:
> I guess I don't understand the problem. What's wrong with doing just -j with
>
>
> Jmol -j "some global settings here;script ;script ;script "
>
> ?
>
There is nothing wrong with that. I just overlooked it.
(I guess I am just used to think of script loading an
I guess I don't understand the problem. What's wrong with doing just -j with
Jmol -j "some global settings here;script ;script ;script "
?
Bob
On Mon, Dec 1, 2008 at 8:37 AM, Rolf Huehne <[EMAIL PROTECTED]> wrote:
> Bob, I somehow missed tp provide an answer to this.
>
> Unfortuna
Bob, I somehow missed tp provide an answer to this.
Unfortunately this order is exactly opposite to what I would need:
1) do some global settings
2) run a script file directed by the global settings
Since there may also be cases where the other order would be needed it
might be good if there wer
-s first, then -j
On Mon, Oct 13, 2008 at 10:45 AM, Rolf Huehne <[EMAIL PROTECTED]>wrote:
> Robert Hanson wrote:
> > Lots of new features in Jmol 11.7 already:
> > # new feature: (Application) command line option -j --jmolscript "script
> > commands"
> >
> > Another feature request - to be able
Robert Hanson wrote:
> Lots of new features in Jmol 11.7 already:
> # new feature: (Application) command line option -j --jmolscript "script
> commands"
>
> Another feature request - to be able to have multiple scripts on the command
> line. Well, this is better -- any script "inline" on the comma
That should read:
>
> # new feature: load TRAJECTORY "[topology file]" COORD
> ({bitset})|{first,last,stride} "mdcrd::md1.crd COORD ..."
>
>
> (in fact, "FILES" works fine there in place of "TRAJECTORY", but TRAJECTORY
seems more appropriate in this case.)
Bob
--
Robert M. Hanson
Professor of
Lots of new features in Jmol 11.7 already:
version=11.7.3
# new feature: x = file("some file name") or x = file("?") -- returns full
path to file
Seems to me this could be useful. For example, from JavaScript:
var filePath = jmolEvaluate('file("?")')
Now filePath is the full path to a file sp
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