Re: [Jmol-users] New feature inquiry

2008-08-30 Thread Robert Hanson
all three are independent: set atomPicking set bondPicking set drawPicking On Sat, Aug 30, 2008 at 2:49 PM, Angel Herráez <[EMAIL PROTECTED]> wrote: > On 30 Aug 2008 at 14:20, Robert Hanson wrote: > > Jmol 11.6.RC12 now has > > > > set atomPicking [default TRUE] > > set bondPicking [default F

Re: [Jmol-users] New feature inquiry

2008-08-30 Thread Angel Herráez
On 30 Aug 2008 at 14:20, Robert Hanson wrote: > Jmol 11.6.RC12 now has > > set atomPicking [default TRUE] > set bondPicking [default FALSE] Nice! and quick Are those 2 independently set, or are they alternative options? And, how does that combine with the different "set picking" variants?

Re: [Jmol-users] New feature inquiry

2008-08-30 Thread Robert Hanson
Jmol 11.6.RC12 now has set atomPicking [default TRUE] set bondPicking [default FALSE] The report from the bond picking looks like this: ["bond","69 1 [GLY]37.C #263 -- [GLY]37.CA #262 1.5251089",21.2975,16.2235,6.473] The First number is the bond ID. It is the number you would use to

Re: [Jmol-users] New feature inquiry

2008-08-30 Thread Robert Hanson
Steve, there's probably not much sense in creating a generic bond-equivalent object like that. But you can do what you say yourself. For example, if a student is asked to click on a peptide bond, you know what bond it is, so you can create the link yourself and, like you say, make them transparent

[Jmol-users] New feature inquiry

2008-08-30 Thread [EMAIL PROTECTED]
This is a preliminary inquiry about two feature requests.  In my MolnIquiry site, I have imbedded line objects as bonds that can then be ?picked?; for example, students are asked to click on a peptide bond.). Creating these objects is a task, particularly if many are needed, and the li