Rolf, I was able to implement that. It is a bit simpler:
print _M.dssr.pairs.select("where bp='G-C'")[1]
{
"DSSR" : "cW-W"
"LW" : "cWW"
"Saenger" : "19-XIX"
"bp" : "G-C"
"index" : 3
"name" : "WC"
"nt1" : "|1|D|DG|3"
"nt2" : "|1|E|DC|36"
}
select within(dss
I will pass for the moment. I have solved my questions.
> On Apr 14, 2016, at 1:59 PM, Rolf Huehne wrote:
>
> On 04/14/2016 07:19 PM, Robert Hanson wrote:
>> Phil, you should check out DSSR. It is amazing! Sorry this is not
>> documented yet:
>>
>> new feature: select shortcuts for nucleic
I noticed this today as well. That's why I wrote that suggestion the way I
did, with defining "x" first and then selecting it. It has to do with some
changes in the syntax for DSSR that occurred over the course of development
of the Jmol interface. I do like that syntax, so I think about how to get
On 04/14/2016 07:19 PM, Robert Hanson wrote:
> Phil, you should check out DSSR. It is amazing! Sorry this is not
> documented yet:
>
> new feature: select shortcuts for nucleic acid structures
>-- for example: select junctions; select kissingloops
>-- activated after load =/dssr or calc
Phil, you should check out DSSR. It is amazing! Sorry this is not
documented yet:
new feature: select shortcuts for nucleic acid structures
-- for example: select junctions; select kissingloops
-- activated after load =/dssr or calculate structure dssr
-- includes:
"@bulges within(ds
This is for the biomolecular people:
How does one use the term “Selected”? Seems to me that it is redundant.
In the Nucleic Acid area: How does one use CG and AT to select base pairing?
Perhaps these are not implemented in Jmol?
PS I am finding today’s version to work well for my purposes, wh
6 matches
Mail list logo
