Re: [Jmol-users] newbie question....load from script

2008-03-26 Thread Bob Hanson
Thomas Stout wrote: Thanks very much -- this is getting /more/ confusing! If I add set debugScript; set loglevel 5; to the script, nothing changes and the amount of output to the console does not change (I only get Script completed / Jmol script terminated. But you also get those Token

Re: [Jmol-users] newbie question....load from script

2008-03-26 Thread Thomas Stout
Ah ha! -- Lots of good information and suggestions there - thank you very much! One of those was exactly the problem: it turns out that naming the script load.script OR load_script was problematic. Renaming to either load_script.txt or foo works as expected! As you suggest, I suspect there is

Re: [Jmol-users] newbie question....load from script

2008-03-26 Thread Bob Hanson
Thomas Stout wrote: Ah ha! -- Lots of good information and suggestions there - thank you very much! One of those was exactly the problem: it turns out that naming the script load.script OR load_script was problematic. Renaming to either load_script.txt or foo works as expected! As you

[Jmol-users] newbie question....load from script

2008-03-25 Thread Thomas Stout
Hi All -- I am *just *getting started with JMol, so I apologize if this is blatently obvious, but I've run into a bit of strange behavior with scripting the applet. Is there something particularly special about the load command? I am calling out to a script file to load several PDB files, but

Re: [Jmol-users] newbie question....load from script

2008-03-25 Thread Bob Hanson
Tom, welcome! Be sure to let us know if you are using the application or the applet -- sometimes it makes a difference. The zap command is not necessary -- it's always executed first as part of the load command. But it must have been excuted. Everything looks fine there. Try adding these first

Re: [Jmol-users] newbie question....load from script

2008-03-25 Thread Angel Herráez
Hi, Thomas, welcome to Jmol world! I can see no reason for the problem you describe. Try these: 1.- open the Java console* and see if there is some error there (*find a coffee cup icon in the taskbar, bottom right of your screen, right-click on it, choose Open Console) 2.- open Jmol console