Re: No references in pdf output after change to texlive2012
Am Freitag, 7. Dezember 2012, 16:43:57 schrieb stefano franchi: > On Thu, Dec 6, 2012 at 3:21 AM, Wolfgang Engelmann < > > engelm...@uni-tuebingen.de> wrote: > > Am Mittwoch, 5. Dezember 2012, 23:53:51 schrieb stefano franchi: > > > I would use the latest stable version (right now, 2.0.5) How to > > > install it would depend on which Linux distribution you are > > > using. I am on Arch, and installing (stable) Lyx from the official > > > package works fine. > > > > I am on Debian squeeze. > > Debian Squeeze is still stuck at 2.0.3, I believe. So it may be worth > 2.0.5 installing from sources. If you managed to successfully compile > 2.1, you should not have troubles with 2.0.5---I assume you'll have all > the required packages already installed. > However, I am far from being an expert on Debian. Other people on the > list may provide more focused advice. > > Cheers, > > Stefano Thanks, Stefano will wait... Wolfgang
Re: No references in pdf output after change to texlive2012
On Thu, Dec 6, 2012 at 3:21 AM, Wolfgang Engelmann < engelm...@uni-tuebingen.de> wrote: > Am Mittwoch, 5. Dezember 2012, 23:53:51 schrieb stefano franchi: > > I would use the latest stable version (right now, 2.0.5) How to install > > it would depend on which Linux distribution you are using. I am on > > Arch, and installing (stable) Lyx from the official package works fine. > > I am on Debian squeeze. > Debian Squeeze is still stuck at 2.0.3, I believe. So it may be worth 2.0.5 installing from sources. If you managed to successfully compile 2.1, you should not have troubles with 2.0.5---I assume you'll have all the required packages already installed. However, I am far from being an expert on Debian. Other people on the list may provide more focused advice. Cheers, Stefano -- __ Stefano Franchi Associate Research Professor Department of Hispanic StudiesPh: +1 (979) 845-2125 Texas A&M University Fax: +1 (979) 845-6421 College Station, Texas, USA stef...@tamu.edu http://stefano.cleinias.org
Re: No references in pdf output after change to texlive2012
Am Mittwoch, 5. Dezember 2012, 23:53:51 schrieb stefano franchi: Thanks, Stefano: > On Wed, Dec 5, 2012 at 7:53 AM, Wolfgang Engelmann < > > engelm...@uni-tuebingen.de> wrote: > > Am Samstag, 1. Dezember 2012, 18:37:00 schrieb stefano franchi: > > > > after a few days of abstinence from the PC I started again today and, > > surprise, the citations and references are all rendering ok in the pdf > > output. > > Glad to hear that. The computing gods may have decided to smile on > you... I am sure it was just the reboot > > > As to your question: I somehow managed to get this version via svn to > > work and hesitate to change it since I am very good in ending in an > > utter chaos. So unless you can point me to a safe way of installing > > the version of LyX, which you would recommend, I would stick to it. > > I would use the latest stable version (right now, 2.0.5) How to install > it would depend on which Linux distribution you are using. I am on > Arch, and installing (stable) Lyx from the official package works fine. I am on Debian squeeze. Wolfgang
Re: No references in pdf output after change to texlive2012
On Wed, Dec 5, 2012 at 7:53 AM, Wolfgang Engelmann < engelm...@uni-tuebingen.de> wrote: > Am Samstag, 1. Dezember 2012, 18:37:00 schrieb stefano franchi: > > after a few days of abstinence from the PC I started again today and, > surprise, the citations and references are all rendering ok in the pdf > output. > > Glad to hear that. The computing gods may have decided to smile on you... > As to your question: I somehow managed to get this version via svn to work > and hesitate to change it since I am very good in ending in an utter chaos. > So unless you can point me to a safe way of installing the version of LyX, > which you would recommend, I would stick to it. > > I would use the latest stable version (right now, 2.0.5) How to install it would depend on which Linux distribution you are using. I am on Arch, and installing (stable) Lyx from the official package works fine. I do keep a more or less updated version of (unstable) trunk for testing purposes, but I would not use it for production. The file format is not (nor is it supposed to be) stable, for instance, and that may create problems. For Ubuntu, using the PPA seem to be working fine as well for many users, but I am not a regular Ubuntu user. Best, Stefano -- __ Stefano Franchi Associate Research Professor Department of Hispanic StudiesPh: +1 (979) 845-2125 Texas A&M University Fax: +1 (979) 845-6421 College Station, Texas, USA stef...@tamu.edu http://stefano.cleinias.org
Re: No references in pdf output after change to texlive2012
Am Samstag, 1. Dezember 2012, 18:37:00 schrieb stefano franchi: > Hi Wolfgang, > > you file compiles fine here (I believe, I am not sure exactly what your > desired output is). See pdf below. > > I think you may have something wrong with your environment. Again, check > the bibtex log in Document>>Latex Log >> Bibtex > > One question: why are you using the unreleased trunk version of lyx? In > my opinion, it's never a good idea to use development-level software in > a production environment. > > Cheers, > > Stefano Hi, Stefano, after a few days of abstinence from the PC I started again today and, surprise, the citations and references are all rendering ok in the pdf output. As to your question: I somehow managed to get this version via svn to work and hesitate to change it since I am very good in ending in an utter chaos. So unless you can point me to a safe way of installing the version of LyX, which you would recommend, I would stick to it. Thanks to you and all the others for helping me and for your patiences with me. Yours, Wolfgang
Re: No references in pdf output after change to texlive2012
Am Samstag, 1. Dezember 2012, 17:16:23 schrieb stefano franchi:
> Wolfgang,
>
> there were no files attached to your message.
>
> Cold you send them again?
>
> Best,
>
> Stefano
Sorry, here they are
Wolfgang
>
>
> On Sat, Dec 1, 2012 at 8:54 AM, Wolfgang Engelmann <
>
> engelm...@uni-tuebingen.de> wrote:
> > Am Freitag, 30. November 2012, 23:28:55 schrieben Sie:
> > > Whenever your ref disappear, the first suspicion is that biber/biber
> > > cannot find the bib file. The second is that bibtex/biber
> > > themselves have disappeared (i.e. lyx cannot find them).
> > > Have you checked their log (Document>>LaTeX Log, then "Bibtex" from
> > > the drop down menu)? What does it say?
> > >
> > > Cheers,
> > >
> > > Stefano
> >
> > Hi, Stefano,
> > and thanks.
> >
> > Could you or somebody else kindly check the included short file (bib
> > file also added).
> > If I run it under lyx, it does not show with my setup the citation
> > and the references. If I export the tex file and run latex and bibtex
> > (3 times) and do dvips it shows the reference, but not the citation
> > (a ?).
> >
> > The latex logfile tells me the following
> > Package natbib Warning: Citation `Silver2011' on page 1 undefined on
> > input line
> >
> > 72.
> >
> > No file aTest.bbl.
> > Package natbib Warning: There were undefined citations.
> >
> > I had tried it with my former texlive2011 also, same problem. Note,
> > that I do not use biber, since there is no Vancouver layout
> > available. I might have forgotten to set something back from the
> > biber setup, but an old file does not work either.
> >
> > I am baffled.
> >
> > Wolfgang
--
-
Wolfgang Engelmann
Schlossgartenstrasse 22
D-72070 Tübingen
Tel 07071 68325
aTest.lyx
Description: application/lyx
% This file was created with JabRef 2.6.
% Encoding: ISO8859_1
@ARTICLE{Silver2011,
author = {Rae Silver and Peter D Balsam and Matthew P Butler and Joseph LeSauter},
title = {Food anticipation depends on oscillators and memories in both body
and brain.},
journal = {Physiol Behav},
year = {2011},
volume = {104},
pages = {562--571},
abstract = {Despite the importance of learning and circadian rhythms to feeding,
there has been relatively little effort to integrate these separate
lines of research.
In this review, we focus on how light and food entrainable oscillators
contribute to the anticipation of food. In particular, we examine
the evidence for temporal conditioning of food entrainable oscillators
throughout the body. The evidence suggests a shift away from previous
notions of a single locus or neural network of food entrainable oscillators
to a distributed system involving dynamic feedback among cells of
the body and brain.
Several recent advances, including documentation of peroxiredoxin
metabolic circadian oscillation and anticipatory behavior in the
absence of a central nervous system, support the possibility of conditioned
signals from the periphery in determining anticipatory behavior.
Individuals learn to detect changes in internal and external signals
that occur as a consequence of the brain and body preparing for an
impending meal. Cues temporally near and far from actual energy content
can then be used to optimize responses to temporally predictable
and unpredictable cues in the environment.},
institution = {Department of Psychology, Columbia University, 1190 Amsterdam Avenue,
New York, NY 10027, USA. q...@columbia.edu},
keywords = {Animals; Anticipation, Psychological, physiology; Biological Clocks,
physiology; Brain, physiology; Feeding Behavior, physiology/psychology;
Humans; Memory, physiology; Models, Biological; Psychophysiology},
language = {eng},
medline-pst = {ppublish},
owner = {wolfgang},
pii = {S0031-9384(11)00303-9},
pmid = {21664916},
timestamp = {2012.05.19}
}
@comment{jabref-meta: selector_publisher:}
@comment{jabref-meta: selector_author:}
@comment{jabref-meta: selector_journal:}
@comment{jabref-meta: selector_keywords:}
Re: No references in pdf output after change to texlive2012
Am Samstag, 1. Dezember 2012, 15:54:55 schrieb Wolfgang Engelmann: just tried to export the pdf from the Embedded objects in Help and it displays both citations and references. So something must be wrong with my settings. Wolfgang > Am Freitag, 30. November 2012, 23:28:55 schrieben Sie: > > Whenever your ref disappear, the first suspicion is that biber/biber > > cannot find the bib file. The second is that bibtex/biber themselves > > have disappeared (i.e. lyx cannot find them). > > Have you checked their log (Document>>LaTeX Log, then "Bibtex" from > > the drop down menu)? What does it say? > > > > Cheers, > > > > Stefano > > Hi, Stefano, > and thanks. > > Could you or somebody else kindly check the included short file (bib > file also added). > If I run it under lyx, it does not show with my setup the citation and > the references. If I export the tex file and run latex and bibtex (3 > times) and do dvips it shows the reference, but not the citation (a ?). > > The latex logfile tells me the following > Package natbib Warning: Citation `Silver2011' on page 1 undefined on > input line > 72. > No file aTest.bbl. > Package natbib Warning: There were undefined citations. > > I had tried it with my former texlive2011 also, same problem. Note, that > I do not use biber, since there is no Vancouver layout available. I > might have forgotten to set something back from the biber setup, but an > old file does not work either. > > I am baffled. > > Wolfgang -- - Wolfgang Engelmann Schlossgartenstrasse 22 D-72070 Tübingen Tel 07071 68325
Re: No references in pdf output after change to texlive2012
Whenever your ref disappear, the first suspicion is that biber/biber cannot find the bib file. The second is that bibtex/biber themselves have disappeared (i.e. lyx cannot find them). Have you checked their log (Document>>LaTeX Log, then "Bibtex" from the drop down menu)? What does it say? Cheers, Stefano On Fri, Nov 30, 2012 at 2:30 PM, Wolfgang Engelmann < engelm...@uni-tuebingen.de> wrote: > Am Freitag, 30. November 2012, 20:43:01 schrieb Wolfgang Engelmann: > > Am Freitag, 30. November 2012, 17:15:23 schrieb Scott Kostyshak: > > > On Fri, Nov 30, 2012 at 11:14 AM, Wolfgang Engelmann > > > > > > wrote: > > > > Hello, > > > > > > > > I changed from texlive2011 to texlive2012 > > > > > > Did you run Tools > reconfigure ? > > > > yes, but same problem > > > > Wolfgang > > I changed ~/.profile back to texlive2011, > as it was before and which used to work for the refs and cites in my > documents. (texhash on user and as root, reconfigure done) > > But still no cites and refs. Strange! > > Any ideas? > > Wolfgang > -- __ Stefano Franchi Associate Research Professor Department of Hispanic StudiesPh: +1 (979) 845-2125 Texas A&M University Fax: +1 (979) 845-6421 College Station, Texas, USA stef...@tamu.edu http://stefano.cleinias.org
Re: No references in pdf output after change to texlive2012
Am Freitag, 30. November 2012, 20:43:01 schrieb Wolfgang Engelmann: > Am Freitag, 30. November 2012, 17:15:23 schrieb Scott Kostyshak: > > On Fri, Nov 30, 2012 at 11:14 AM, Wolfgang Engelmann > > > > wrote: > > > Hello, > > > > > > I changed from texlive2011 to texlive2012 > > > > Did you run Tools > reconfigure ? > > yes, but same problem > > Wolfgang I changed ~/.profile back to texlive2011, as it was before and which used to work for the refs and cites in my documents. (texhash on user and as root, reconfigure done) But still no cites and refs. Strange! Any ideas? Wolfgang
Re: No references in pdf output after change to texlive2012
Am Freitag, 30. November 2012, 17:15:23 schrieb Scott Kostyshak: > On Fri, Nov 30, 2012 at 11:14 AM, Wolfgang Engelmann > > wrote: > > Hello, > > > > I changed from texlive2011 to texlive2012 > > Did you run Tools > reconfigure ? yes, but same problem Wolfgang
Re: No references in pdf output after change to texlive2012
On Fri, Nov 30, 2012 at 11:14 AM, Wolfgang Engelmann wrote: > Hello, > > I changed from texlive2011 to texlive2012 Did you run Tools > reconfigure ? Scott
No references in pdf output after change to texlive2012
Hello,
I changed from texlive2011 to texlive2012 and get thereafter in my Koma
book a ? instead of the citations and no references in the pdf output of
the lyx file. The log file tells me
Package natbib Warning: Citation `Hennessey1991' on page 1 undefined on
input line 124.
[1
{/mnt/sda/home/wolfgang/texlive/2012/texmf-
var/fonts/map/pdftex/updmap/pdftex.map}]
LaTeX Font Info:Font shape `T1/phv/bx/n' in size <12> not available
(Font) Font shape `T1/phv/b/n' tried instead on input line
135.
Package natbib Warning: Citation `Panda2004' on page 2 undefined on input
line
152.
Is the missing font the cause and where do I get it resp. which other font
can I use? I am under debian-linux
Wolfgang
