Re: listings interrupted by figure in pdf output

[Herbert Voss]

Am 22.05.23 um 15:47 schrieb Wolfgang Engelmann:



Am 22.05.23 um 15:26 schrieb Herbert Voss:



Am 22.05.23 um 14:22 schrieb Wolfgang Engelmann:
How can one avoid the interruption of a listing (used instead of an 
algorithm, because of its length) by a figure in the pdf output of a 
koma script book?

Wolfgang,

enable the option "float"  (Gleitobjekt) in the listings menue.
or put the listing into a minipage. However, this can lead to a lot
of whitespace on one page.

Herbert


Thanks, Herbert.

However, I could not find a listings menue, where I could enable the 
float option.


put the cursor into the listings and then Edit->Listings


If I put the listing in a box (minipage), it is uninterrupted, but 
runs over the normal end of the page. The reason we used listings was, 
that it can be interrupted if to long at the end of the page and 
continued at the next page.


then use package placeins and the command \FloatBarrier after the listing.

A LaTeX example for \FloatBarrier:
https://tex.stackexchange.com/questions/19766/how-to-control-the-position-of-floating-images

Herbert

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Re: listings interrupted by figure in pdf output

[Wolfgang Engelmann]

Am 22.05.23 um 15:26 schrieb Herbert Voss:



Am 22.05.23 um 14:22 schrieb Wolfgang Engelmann:
How can one avoid the interruption of a listing (used instead of an 
algorithm, because of its length) by a figure in the pdf output of a 
koma script book?

Wolfgang,

enable the option "float"  (Gleitobjekt) in the listings menue.
or put the listing into a minipage. However, this can lead to a lot
of whitespace on one page.

Herbert


Thanks, Herbert.

However, I could not find a listings menue, where I could enable the 
float option.


If I put the listing in a box (minipage), it is uninterrupted,  but runs 
over the normal end of the page. The reason we used listings was, that 
it can be interrupted if to long at the end of the page and continued at 
the next page.


Wolfgang
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Re: listings interrupted by figure in pdf output

[Herbert Voss]

Am 22.05.23 um 14:22 schrieb Wolfgang Engelmann:
How can one avoid the interruption of a listing (used instead of an 
algorithm, because of its length) by a figure in the pdf output of a 
koma script book?

Wolfgang,

enable the option "float"  (Gleitobjekt) in the listings menue.
or put the listing into a minipage. However, this can lead to a lot
of whitespace on one page.

Herbert
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listings interrupted by figure in pdf output

[Wolfgang Engelmann]

How can one avoid the interruption of a listing (used instead of an 
algorithm, because of its length) by a figure in the pdf output of a 
koma script book?


Wolfgang
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Re: biblatex error. Can't get correct pdf output

[Wolfgang Engelmann via lyx-users]

On 08.01.22 12:09, Herbert Voss via lyx-users wrote:



There is the key missing, for example

@InBook{Ding2019,
...

btw: do not attached the biblatex-spbasic, it is already part of
TeXLive and MiKTeX.

Herbert



Heureka!

How stupid I missed it. Adding the key solved things, and now the pdf of 
the book to which the bibliography belongs is also outputted.

Would be nice to know how one could find out from the log file whats wrong.
Thanks a lot, Herbert.

Wolfgang
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Re: biblatex error. Can't get correct pdf output

[Herbert Voss via lyx-users]

Am 08.01.22 um 12:01 schrieb Wolfgang Engelmann via lyx-users:

However:
A08-TEST.lyx
with SP-WITTE-2022.bib
does not show the references in the bibliography and the one in the 
text is bold, not blue


These are the errors/warnings:
Biber error: BibTeX subsystem: 
/tmp/biber_tmp_tYGf/d7dc170ec507816e85d64326c042e07e_5570.utf8, line 
2837, syntax error: found ",", expected one of: number, name (entry 
type, key, field, or macro name), end of entry ("}" or ")") or quoted 
string ({...} or "...")


and descripition of error:
[6143] Utils.pm:411> ERROR - BibTeX subsystem: 
/tmp/biber_tmp_tYGf/d7dc170ec507816e85d64326c042e07e_5570.utf8, line 
2837, syntax error: found ",", expected one of: number, name (entry 
type, key, field, or macro name), end of entry ("}" or ")") or quoted 
string ({...} or "...")


Wolfgang,
the error message says it all:  Line 2837 of the bib file is a problem 
or at least the line

where something is detected as wrong. And in that line biber found a comma
but expected a number or name to read ...

Line 2837 is:

@InBook{,
...


There is the key missing, for example

@InBook{Ding2019,
...

btw: do not attached the biblatex-spbasic, it is already part of
TeXLive and MiKTeX.

Herbert


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Bibliography occurs twice in pdf output

[Wolfgang Engelmann]

I have a normal Bibliography setting in my Koma script book which is 
correctly shown as such in the pdf output.


I have additionally a
Recommended literature
in the book with a few references
which refers to Section 4 of my Appendix as
Recommended literature.

Strangely, this
Recommended literature
section

is listed in the pdf file also as
bibliography
so that I have
bibliography
listed twice

Strange! What am I doing wrong?

Wolfgang
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Re: PDF output wrong size

[Les]

On Thu, 5 Mar 2020 18:56:43 +
Paul Evans  wrote:

> I was struck by your observation that the memoir class ignores the
> LyX page sizes. I have been using memoir as my base for most LyX
> drafting and have happily used either the LyX defaults or minor
> variations specified in the LyX settings eg on margins without any
> apparent need to put anything in the preamble. Is this just because I
> have simple needs (a4, standard margins)? If I needed a greater range
> of sizes would I then find that the LyX settings were ignored? 

Paul,

The problem is that standard LaTeX page definitions do not allow the
precise layout design which is one of memoir's purposes, so the package
does things differently. The default values are ones which are used
very frequently, so new users of memoir often don't notice the
difference. But when you want to move away from the default you have
problems. That's how I found out that memoir does things differently.

Les

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Re: PDF output wrong size

[Paul Evans]

> On 3 Mar 2020, at 21:30, Les  wrote:
> 
> On Tue, 3 Mar 2020 11:10:42 -0700
> Richard Opheim  wrote:
> 
>> Sorry about that. It's been a while since I posted.
>> I'm running LyX 2.3.4.3 on WIN10. The class is memoir. I specify that
>> the paper format should be 8 x 5, but the program doggedly outputs to
>> 8.5 x 11.
> 
> The memoir class ignores LyX page sizes. You have to define them in
> the  preamble.
> 
> Here is what I have put in the preamble to solve a similar problem:
> 
> \setstocksize{9in}{6in}
> \settrimmedsize{9in}{6in}{*}
> \settrims{0pt}{0pt}
> \settypeblocksize{7.7in}{4.5in}{*}
> \setulmarginsandblock{24mm}{20mm}{*}
> \setheaderspaces{0.625in}{*}{*}
> \setlrmargins{0.75in}{*}{*}
> \setlength{\marginparwidth}{0.0in}
> \setlength{\uppermargin}{0.7in} %Top margin including header
> 
> -- 
> Les Denham
> -- 
> lyx-users mailing list
> lyx-users@lists.lyx.org
> http://lists.lyx.org/mailman/listinfo/lyx-users

Les

I was struck by your observation that the memoir class ignores the LyX page 
sizes. I have been using memoir as my base for most LyX drafting and have 
happily used either the LyX defaults or minor variations specified in the LyX 
settings eg on margins without any apparent need to put anything in the 
preamble. Is this just because I have simple needs (a4, standard margins)? If I 
needed a greater range of sizes would I then find that the LyX settings were 
ignored? 

I have been using versions of LyX up to the most recent on Mac OSX, currently 
Catalina.

Agree with you about the manual! 

Regards

Paul

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Re: PDF output wrong size

[Les]

On Thu, 5 Mar 2020 09:53:36 -0800 (PST)
Rich Shepard  wrote:

> There's a tool called pdfjam that allows a pdf document to be resized
> to different paper sizes (among other tweaks.) I learned of it when
> printed web pages were legal rather than letter size. Using pdfjam I
> reformatted the documents to fit letter paper.

Rich,

Thanks for the information. I might have a use for pdfjam sometimes.

The document I gave the example for is a memoir currently in the
process of publication. When the "Books Manager" with the publisher
talked about scraping my text from my 340 page PDF file, in order to
reformat to follow their style, it set off all kinds of alarm bells
when I thought of what they would do with over a hundred figures, a six
page glossary, an 18 page index, and hundreds of cross-references. So I
offered to prepare a final PDF to their detailed specifications. The
trickiest part was getting the page headings exactly as they wanted
them. This would not be possible with KOMA-script (which I have used
extensively, and still do use a lot).

I hope by doing it this way, the publisher will not only get it
"right", but will get it on sale faster, and at lower cost. If
the publisher's costs are lower, they can sell at a lower price, which
will increase the number of sales and (hopefully) increase my royalties.

Les
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Re: PDF output wrong size

[Rich Shepard]

On Thu, 5 Mar 2020, Les wrote:


Actually, /setstocksize alone does the trick.


Les,

I use the KOMA-Script classes, not memoir, but I offer information related
to PDF page size that applies to existing PDF files, not generated ones in
LyX.

There's a tool called pdfjam that allows a pdf document to be resized to
different paper sizes (among other tweaks.) I learned of it when printed web
pages were legal rather than letter size. Using pdfjam I reformatted the
documents to fit letter paper.

Off topic but perhaps useful.

Carpe weekend,

Rich
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Re: PDF output wrong size

[Les]

On Wed, 4 Mar 2020 13:09:03 -0700
Richard Opheim  wrote:

> Thank you. That works.
> Actually, /setstocksize alone does the trick.

Yes. The commands I listed set up the whole of the page layout.

I really like memoir, but learning it has taken me years, and  I still
have to look things  up in the manual (over 500 pages with a Fog  Index
around 13).

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Re: PDF output wrong size

[Richard Opheim]

Thank you. That works.
Actually, /setstocksize alone does the trick.

On Tue, Mar 3, 2020 at 2:30 PM Les  wrote:

> On Tue, 3 Mar 2020 11:10:42 -0700
> Richard Opheim  wrote:
>
> > Sorry about that. It's been a while since I posted.
> > I'm running LyX 2.3.4.3 on WIN10. The class is memoir. I specify that
> > the paper format should be 8 x 5, but the program doggedly outputs to
> > 8.5 x 11.
>
> The memoir class ignores LyX page sizes. You have to define them in
> the  preamble.
>
> Here is what I have put in the preamble to solve a similar problem:
>
> \setstocksize{9in}{6in}
> \settrimmedsize{9in}{6in}{*}
> \settrims{0pt}{0pt}
> \settypeblocksize{7.7in}{4.5in}{*}
> \setulmarginsandblock{24mm}{20mm}{*}
> \setheaderspaces{0.625in}{*}{*}
> \setlrmargins{0.75in}{*}{*}
> \setlength{\marginparwidth}{0.0in}
> \setlength{\uppermargin}{0.7in} %Top margin including header
>
> --
> Les Denham
>


-- 
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PO box 2261
Arizona City, AZ 85123

Skype name: richard.opheim
Office: +1 (262) 724-0443
Mobile: +1 (206) 965-0564
J-E Translation


Now available on Amazon:

*The Taste of Kyoto: A Guide to Dining and Sightseeing in the Old Capital
*

*Conga Oriental: Traditional Parade Music of Eastern Cuba
*



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Re: PDF output wrong size

[Les]

On Tue, 3 Mar 2020 11:10:42 -0700
Richard Opheim  wrote:

> Sorry about that. It's been a while since I posted.
> I'm running LyX 2.3.4.3 on WIN10. The class is memoir. I specify that
> the paper format should be 8 x 5, but the program doggedly outputs to
> 8.5 x 11.

The memoir class ignores LyX page sizes. You have to define them in
the  preamble.

Here is what I have put in the preamble to solve a similar problem:

\setstocksize{9in}{6in}
\settrimmedsize{9in}{6in}{*}
\settrims{0pt}{0pt}
\settypeblocksize{7.7in}{4.5in}{*}
\setulmarginsandblock{24mm}{20mm}{*}
\setheaderspaces{0.625in}{*}{*}
\setlrmargins{0.75in}{*}{*}
\setlength{\marginparwidth}{0.0in}
\setlength{\uppermargin}{0.7in} %Top margin including header

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Re: PDF output wrong size

[Richard Opheim]

Sorry about that. It's been a while since I posted.
I'm running LyX 2.3.4.3 on WIN10. The class is memoir. I specify that the
paper format should be 8 x 5, but the program doggedly outputs to 8.5 x 11.
Other paper format specifications result in the same problem.The problem is
not caused by tables or figure floats; only by graphics, whether in a
figure float or not. Deleting the graphic allows the program to output to
the size specified in paper format. Downsizing the graphics doesn't help.
This behavior was not noticed until recently because I had been working for
a couple of years on a book in the 8.5 x 11 (letter) format which outputs
normally with graphics inserted.
Please find attached a new file with minimal text, graphic without float,
and nothing in the preamble, which results in the same undesirable output.

On Tue, Mar 3, 2020 at 5:11 AM Dr Eberhard Lisse  wrote:

> Richard (Opheim)
>
> This is not a MWE.
>
> Remove EVERYTHING (packages, layouts) from the file (and preamble) which
> does not cause the error. Or construct a virgin file, without anything
> other than a line or two of text, add the paper format and the image.
> If that works out add one modification, package at the time and
> regenerate the PDF.
>
> That often helps me finding the cause :-)-O
>
> el
>
> On 29/02/2020 06:35, Richard Opheim wrote:
> >
> >
> > On Fri, Feb 28, 2020 at 9:16 PM Richard Kimberly Heck
> >  wrote:
> >
> > On 2/28/20 10:54 PM, Richard Opheim wrote:
> >>
> >>
> >> On Fri, Feb 28, 2020 at 8:35 PM Richard Kimberly Heck
> >> mailto:rikih...@lyx.org>> wrote:
> >>
> >> On 2/28/20 8:07 PM, Richard Opheim wrote:
> >> > The attached file's document/settings/page layout/paper
> >> > format is set to 8" high, 5" wide.  However, it outputs to
> >> > what I assume is a default 8.5x11 size.  If I remove the
> >> > figure float at the end of the page, it outputs to the
> >> > correct size.  Why should the figure cause this?  The size
> >> > of the figure itself is only 2" wide.
> >>
> >> Can you also attach the figure? Without it, it's hard to say.
> >>
> >> FYI, my wife is really into Latin percussion. This looks
> interesting!
> >>
> >> Riki
> >>
> >>
> >>Oops.  Please find attached.
> >
> > No problem, but you should reply to the list.  I'm not an expert
> > on this kind of thing.
> >
> > That said, I did notice a "Here definitely" default for float
> > placement in Document> Settings.  That could mess up the page
> > sizes.
> >
> > Riki
> >
> >
> > Hm. Thought I was replying to the list.
> >
> > I fiddled around with the placement settings, but no change.  Removing
> > the figure from the figure float does work, though what use is a float
> > without anything in it.  Tried making the graphic smaller; didn't make
> > any difference.  Figure without float also no go.
> >
> > --
> > Richard Opheim
> [...]
>
>
> --
> If you want to email me, replace nospam with el
>
>
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>


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Skype name: richard.opheim
Office: +1 (262) 724-0443
Mobile: +1 (206) 965-0564
J-E Translation


Now available on Amazon:

*The Taste of Kyoto: A Guide to Dining and Sightseeing in the Old Capital
*

*Conga Oriental: Traditional Parade Music of Eastern Cuba
*



*Sine probationem non creditis*


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Re: PDF output wrong size

[Dr Eberhard Lisse]

Richard (Opheim)

This is not a MWE. 

Remove EVERYTHING (packages, layouts) from the file (and preamble) which
does not cause the error. Or construct a virgin file, without anything 
other than a line or two of text, add the paper format and the image. 
If that works out add one modification, package at the time and 
regenerate the PDF.

That often helps me finding the cause :-)-O

el

On 29/02/2020 06:35, Richard Opheim wrote:
> 
> 
> On Fri, Feb 28, 2020 at 9:16 PM Richard Kimberly Heck
>  wrote:
> 
> On 2/28/20 10:54 PM, Richard Opheim wrote:
>>
>>
>> On Fri, Feb 28, 2020 at 8:35 PM Richard Kimberly Heck
>> mailto:rikih...@lyx.org>> wrote:
>>
>> On 2/28/20 8:07 PM, Richard Opheim wrote:
>> > The attached file's document/settings/page layout/paper
>> > format is set to 8" high, 5" wide.  However, it outputs to
>> > what I assume is a default 8.5x11 size.  If I remove the
>> > figure float at the end of the page, it outputs to the
>> > correct size.  Why should the figure cause this?  The size
>> > of the figure itself is only 2" wide.
>>
>> Can you also attach the figure? Without it, it's hard to say.
>>
>> FYI, my wife is really into Latin percussion. This looks interesting!
>>
>> Riki
>>
>>
>>Oops.  Please find attached.
> 
> No problem, but you should reply to the list.  I'm not an expert
> on this kind of thing.
> 
> That said, I did notice a "Here definitely" default for float
> placement in Document> Settings.  That could mess up the page
> sizes.
> 
> Riki
> 
> 
> Hm. Thought I was replying to the list.
> 
> I fiddled around with the placement settings, but no change.  Removing
> the figure from the figure float does work, though what use is a float
> without anything in it.  Tried making the graphic smaller; didn't make
> any difference.  Figure without float also no go.
> 
> -- 
> Richard Opheim
[...]


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Re: PDF output wrong size

[Richard Opheim]

On Fri, Feb 28, 2020 at 9:16 PM Richard Kimberly Heck 
wrote:

> On 2/28/20 10:54 PM, Richard Opheim wrote:
>
>
>
> On Fri, Feb 28, 2020 at 8:35 PM Richard Kimberly Heck 
> wrote:
>
>> On 2/28/20 8:07 PM, Richard Opheim wrote:
>> > The attached file's document/settings/page layout/paper format is set
>> > to 8" high, 5" wide. However, it outputs to what I assume is a default
>> > 8.5x11 size. If I remove the figure float at the end of the page, it
>> > outputs to the correct size. Why should the figure cause this? The
>> > size of the figure itself is only 2" wide.
>>
>> Can you also attach the figure? Without it, it's hard to say.
>>
>> FYI, my wife is really into Latin percussion. This looks interesting!
>>
>> Riki
>>
>>
>> Oops. Please find attached.
>
> No problem, but you should reply to the list. I'm not an expert on this
> kind of thing.
>
> That said, I did notice a "Here definitely" default for float placement in
> Document> Settings. That could mess up the page sizes.
>
> Riki
>
> Hm. Thought I was replying to the list.
I fiddled around with the placement settings, but no change. Removing the
figure from the figure float does work, though what use is a float without
anything in it. Tried making the graphic smaller; didn't make any
difference. Figure without float also no go.

-- 
Richard Opheim
PO box 2261
Arizona City, AZ 85123

Skype name: richard.opheim
Office: +1 (262) 724-0443
Mobile: +1 (206) 965-0564
J-E Translation


Now available on Amazon:

*The Taste of Kyoto: A Guide to Dining and Sightseeing in the Old Capital
*

*Conga Oriental: Traditional Parade Music of Eastern Cuba
*



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Re: PDF output wrong size

[Richard Kimberly Heck]

On 2/28/20 8:07 PM, Richard Opheim wrote:
> The attached file's document/settings/page layout/paper format is set
> to 8" high, 5" wide. However, it outputs to what I assume is a default
> 8.5x11 size. If I remove the figure float at the end of the page, it
> outputs to the correct size. Why should the figure cause this? The
> size of the figure itself is only 2" wide.

Can you also attach the figure? Without it, it's hard to say.

FYI, my wife is really into Latin percussion. This looks interesting!

Riki


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PDF output wrong size

[Richard Opheim]

The attached file's document/settings/page layout/paper format is set to 8"
high, 5" wide. However, it outputs to what I assume is a default 8.5x11
size. If I remove the figure float at the end of the page, it outputs to
the correct size. Why should the figure cause this? The size of the figure
itself is only 2" wide.

-- 
Richard Opheim
PO box 2261
Arizona City, AZ 85123

Skype name: richard.opheim
Office: +1 (262) 724-0443
Mobile: +1 (206) 965-0564
J-E Translation


Now available on Amazon:

*The Taste of Kyoto: A Guide to Dining and Sightseeing in the Old Capital
*

*Conga Oriental: Traditional Parade Music of Eastern Cuba
*



*Sine probationem non creditis*


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Re: reference in pdf output of beamer > closing paranthesis not colored

[Wolfgang Engelmann]

Am 15.01.20 um 18:43 schrieb Jürgen Spitzmüller:

Am Mittwoch, den 15.01.2020, 18:04 +0100 schrieb Wolfgang Engelmann:

Thanks, Jürgen. There was no graphic.

In the file you originally sent, there were several graphics.


I send the lyx-, bib- and bst style file

my pdf output gives Roenneberg et al (2019) all in green except the
closing paranthesis )

This is a problem in the hyperref code with natbib used in beamer.
Fixing this requires delving deeply into the code. I suggest you ask on
stackexchange for help.

Jürgen

Thanks, Jürgen. I will try another .bst and see. Otherwise following you 
proposal


Wolfgang

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Re: reference in pdf output of beamer > closing paranthesis not colored

[Jürgen Spitzmüller]

Am Mittwoch, den 15.01.2020, 18:04 +0100 schrieb Wolfgang Engelmann:
> Thanks, Jürgen. There was no graphic. 

In the file you originally sent, there were several graphics.

> I send the lyx-, bib- and bst style file
> 
> my pdf output gives Roenneberg et al (2019) all in green except the
> closing paranthesis )

This is a problem in the hyperref code with natbib used in beamer.
Fixing this requires delving deeply into the code. I suggest you ask on
stackexchange for help.

Jürgen


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Re: reference in pdf output of beamer > closing paranthesis not colored

[Wolfgang Engelmann]

Am 15.01.20 um 16:24 schrieb Jürgen Spitzmüller:

Am Mittwoch, den 15.01.2020, 11:29 +0100 schrieb Wolfgang Engelmann:

I am enclosing a short example of a beamer file with two references.

This (not so) short example cannot be compiled due to missing graphics
and BibTeX database.

I suppose you can remove the graphics and reduce it to one reference,
and add the bib file.

Jürgen


Thanks, Jürgen. There was no graphic. I send the lyx-, bib- and bst 
style file


my pdf output gives Roenneberg et al (2019) all in green except the 
closing paranthesis )


Wolfgang






TEST.lyx
Description: application/lyx
% Encoding: UTF-8

@Article{Roenneberg2019,
  author   = {Roenneberg, Till and Winnebeck, Eva C. and Klerman, Elizabeth B.},
  title= {Daylight saving time and artificial time zones - a battle between biological and social times.},
  pages= {944},
  pubstate = {epublish},
  volume   = {10},
  country  = {Switzerland},
  journal  = {Frontiers in physiology},
  keywords = {circadian; circadian misalignment; entrainment (light); social jetlag; time zones},
  nlm-id   = {101549006},
  owner= {NLM},
  pmc  = {PMC6692659},
  pmid = {31447685},
  pubmodel = {Electronic-eCollection},
  revised  = {2019-10-23},
  year = {2019},
}

@Comment{jabref-meta: databaseType:bibtex;}
%%
%% This is file `spbasic.bst',
%% generated with the docstrip utility.
%%
%% The original source files were:
%%
%% merlin.mbs  (with options: 
`ay,nat,seq-lab,vonx,nm-rvx,ed-rev,jnrlst,dt-beg,yr-par,yrp-x,yrpp-xsp,note-yr,jxper,jttl-rm,thtit-a,pgsep-c,num-xser,ser-vol,jnm-x,btit-rm,bt-rm,pre-pub,doi,edparxc,blk-tit,in-col,fin-bare,pp,ed,abr,mth-bare,ord,jabr,xand,eprint,url,url-blk,em-x,nfss,')
%% 
%%
%%%%
%%  
  %%
%% For Springer medical, life sciences, chemistry, geology, engineering and 
  %%
%%   computer science publications. 
  %%
%% For use with the natbib package (see below). Default is author-year 
citations. %%
%%   When citations are numbered, please use \usepackage[numbers]{natbib}.  
  %%
%% A lack of punctuation is the key feature. Springer-Verlag 2004/10/15 
  %%
%% Report bugs and improvements to: Joylene Vette-Guillaume or Frank Holzwarth  
  %%
%%  
  %%
%%%%
%%
%% Copyright 1994-2004 Patrick W Daly
 % ===
 % IMPORTANT NOTICE:
 % This bibliographic style (bst) file has been generated from one or
 % more master bibliographic style (mbs) files, listed above.
 %
 % This generated file can be redistributed and/or modified under the terms
 % of the LaTeX Project Public License Distributed from CTAN
 % archives in directory macros/latex/base/lppl.txt; either
 % version 1 of the License, or any later version.
 % ===
 % Name and version information of the main mbs file:
 % \ProvidesFile{merlin.mbs}[2004/02/09 4.13 (PWD, AO, DPC)]
 %   For use with BibTeX version 0.99a or later
 %---
 % This bibliography style file is intended for texts in ENGLISH
 % This is an author-year citation style bibliography. As such, it is
 % non-standard LaTeX, and requires a special package file to function properly.
 % Such a package isnatbib.sty   by Patrick W. Daly
 % The form of the \bibitem entries is
 %   \bibitem[Jones et al.(1990)]{key}...
 %   \bibitem[Jones et al.(1990)Jones, Baker, and Smith]{key}...
 % The essential feature is that the label (the part in brackets) consists
 % of the author names, as they should appear in the citation, with the year
 % in parentheses following. There must be no space before the opening
 % parenthesis!
 % With natbib v5.3, a full list of authors may also follow the year.
 % In natbib.sty, it is possible to define the type of enclosures that is
 % really wanted (brackets or parentheses), but in either case, there must
 % be parentheses in the label.
 % The \cite command functions as follows:
 %   \citet{key} ==>>Jones et al. (1990)
 %   \citet*{key} ==>>   Jones, Baker, and Smith (1990)
 %   \citep{key} ==>>(Jones et al., 1990)
 %   \citep*{key} ==>>   (Jones, Baker, and Smith, 1990)
 %   \citep[chap. 2]{key} ==>>   (Jones et al., 1990, chap. 2)
 %   \citep[e.g.][]{key} ==>>(e.g. Jones et al., 1990)
 %   \citep[e.g.][p. 32]{key} ==>>   (e.g. Jones et al., p. 32)
 %   \citeauthor{key} ==>>   Jones et al.
 %   \citeauthor*{key} ==>>  Jones, Bake

Re: reference in pdf output of beamer > closing paranthesis not colored

[Jürgen Spitzmüller]

Am Mittwoch, den 15.01.2020, 11:29 +0100 schrieb Wolfgang Engelmann:
> I am enclosing a short example of a beamer file with two references.

This (not so) short example cannot be compiled due to missing graphics
and BibTeX database.

I suppose you can remove the graphics and reduce it to one reference,
and add the bib file.

Jürgen



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reference in pdf output of beamer > closing paranthesis not colored

[Wolfgang Engelmann]

I am enclosing a short example of a beamer file with two references.

The pdf output shows them in green, except the closing paranthesis > )

which is black

Wolfgang



Carus2020-jan14-Test.lyx
Description: application/lyx
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Re: Rasterized PDF output with default font

[Guenter Milde]

On 2018-09-21, Daniel wrote:

> When I typeset a PDF with the default font settings (under Windows 10), 
> the output text is rasterized (source and output files attached).

> I haven't used the default font settings for a while, so maybe this is 
> normal? But it seems strange to me.

It is a known problem: https://www.lyx.org/trac/ticket/9741

Günter

Rasterized PDF output with default font

[Daniel]

Hi,

When I typeset a PDF with the default font settings (under Windows 10), 
the output text is rasterized (source and output files attached).


I haven't used the default font settings for a while, so maybe this is 
normal? But it seems strange to me.


Daniel


test.lyx
Description: application/lyx


test.pdf
Description: Adobe PDF document

Re: Change tracking: no change bar in PDF output

[Jürgen Spitzmüller]

2015-12-30 16:40 GMT+01:00 Rudi Gaelzer <rgael...@gmail.com>:

> There is a possible bug here:
> Using change tracking with PDF output (pdflatex), the \lyxdeleted and
> \lyxadded
> commands work as supposed (respectively: read, strike out and blue).
> However,
> the change bar is not printed at the margin.
>


This is not a bug (you can call it a missing feature). LyX is not supposed
to print a change bar in the output.

You can find a module that implements the feature here:
http://wiki.lyx.org/Layouts/Modules

This module will be part of LyX 2.2.

Jürgen

Change tracking: no change bar in PDF output

[Rudi Gaelzer]

There is a possible bug here:
Using change tracking with PDF output (pdflatex), the \lyxdeleted and \lyxadded 
commands work as supposed (respectively: read, strike out and blue).  However, 
the change bar is not printed at the margin.

Looking at the source, I noticed that LyX uses the xcolor, pdfcolmk and ulem 
pacs to show the changes, when the output is directly piped to a PDF.

OTOH, if I export the doc to (plain) latex, LyX will use the dvipost package.  
Then, with "pplatex " and "dvipdf ", the resulting PDF contains the 
change bar.

=
Here is the source text, which won't printout the change bar.
=
%% LyX 2.1.4 created this file.  For more info, see http://www.lyx.org/.
%% Do not edit unless you really know what you are doing.
\documentclass[english]{article}
\usepackage[T1]{fontenc}
\usepackage[latin9]{inputenc}
\usepackage{xcolor}
\usepackage{pdfcolmk}
\usepackage{amsmath}
\usepackage{amssymb}
\PassOptionsToPackage{normalem}{ulem}
\usepackage{ulem}

\makeatletter

%% LyX specific LaTeX commands.
\providecolor{lyxadded}{rgb}{0,0,1}
\providecolor{lyxdeleted}{rgb}{1,0,0}
%% Change tracking with ulem
\DeclareRobustCommand{\lyxadded}[3]{{\color{lyxadded}{}#3}}
\DeclareRobustCommand{\lyxdeleted}[3]{{\color{lyxdeleted}\sout{#3}}}

\makeatother

\usepackage{babel}
\begin{document}
Lorem ipsum dolor sit amet, \lyxdeleted{Rudi Gaelzer}{Wed Dec 30 15:31:16 
2015}{consectetur
adipisicing elit,} \lyxadded{Rudi Gaelzer}{Wed Dec 30 15:33:45 2015}{some
rubbish here, }sed doeiusmod tempor incididunt ut labore et dolore
magna aliqua. Ut enimad minim veniam, quis nostrud exercitation ullamco
laboris nisi utali\lyxadded{Rudi Gaelzer}{Wed Dec 30 15:34:13 2015}{.}

\lyxadded{Rudi Gaelzer}{Wed Dec 30 15:34:15 2015}{Excepteur sint occaecat
cupidatat non proident, sunt inculpa qui officia deserunt mollit anim
id est laborum.}
\end{document}

=
Here's the source that uses dvipost and generates the bar.
=
%% LyX 2.1.4 created this file.  For more info, see http://www.lyx.org/.
%% Do not edit unless you really know what you are doing.
\documentclass[english]{article}
\usepackage[T1]{fontenc}
\usepackage[latin9]{inputenc}
\usepackage{dvipost}
\usepackage{amsmath}
\usepackage{amssymb}

\makeatletter

%% LyX specific LaTeX commands.
%% Change tracking with dvipost
\dvipostlayout
\dvipost{osstart color push Red}
\dvipost{osend color pop}
\dvipost{cbstart color push Blue}
\dvipost{cbend color pop}
\DeclareRobustCommand{\lyxadded}[3]{\changestart#3\changeend}
\DeclareRobustCommand{\lyxdeleted}[3]{%
\changestart\overstrikeon#3\overstrikeoff\changeend}

\makeatother

\usepackage{babel}
\begin{document}
Lorem ipsum dolor sit amet, \lyxdeleted{Rudi Gaelzer}{Wed Dec 30 15:31:16 
2015}{consectetur
adipisicing elit,} \lyxadded{Rudi Gaelzer}{Wed Dec 30 15:33:45 2015}{some
rubbish here, }sed doeiusmod tempor incididunt ut labore et dolore
magna aliqua. Ut enimad minim veniam, quis nostrud exercitation ullamco
laboris nisi utali\lyxadded{Rudi Gaelzer}{Wed Dec 30 15:34:13 2015}{.}

\lyxadded{Rudi Gaelzer}{Wed Dec 30 15:34:15 2015}{Excepteur sint occaecat
cupidatat non proident, sunt inculpa qui officia deserunt mollit anim
id est laborum.}
\end{document}

-- 
Rudi Gaelzer
Institute of Physics
Federal University of Rio Grande do Sul
BRAZIL
Registered Linux user # 153741

PDF output on mac suddenly became very slow

[Michael Bay]

Hello dear LyX community,

I'm quite new with LyX and probably just have been looking at the 
wrong places for answers to my following question, so please, 
if that should be the case, be so kind to tell me a link to the answer ;-)

If not, I'll be happy to learn about what I've been doing wrong.

I've been writing on LyX for one week now, after having been fed up 
with the programming of LaTeX as a novice with a few weeks 
experience in TeX and some knowledge in programming.

The system:
Mac (10.9.4, Mavericks)
LyX version 2.1.1
BibDesk version 1.6.3 (3296)

The problem:
Everything was fine till two days ago, when LyX suddenly decided 
to take two minutes for each output to pdf-preview. 
I'm working on my bachelor's thesis, so the document is 
about 40 pages of text with about 20 graphics, 
probably nothing out of the ordinary.

If my memory is correct, the problem occured after inserting and 
removing some bigger JPG  PNG graphics, in the process of 
finding the best graphics-format. Now none of these graphics are 
still inserted, the floating objects are removed as well. 

What I also did was changing some directories where I stored 
these files in my project-folder, but LyX should warn me, 
if it doesn't find any external files anymore, shouldn't it? 

Well, it doesn't. What it does is stated in the 
(very basic and to some extend german) 
log at the end of this message.

The first thing to catch my eye is the unnamed process 
from (16:31:02.323) to (16:31:29.225), which occurs three times 
and obviously causes the problem with almost 30s of duration.

Any suggestions?

What I've also been trying is enabling the glossary with no 
success to this point. But I've removed all my attempts, 
including the glossary macro at the end of LyX. 
So that - theoretically - should have no influence and is not 
part of my question.

I hope you have some ideas for the further process of problem solving...

With best regards,
Michael


16:30:59.719: Generiere Vorschau ...
16:30:59.761: (buffer-view: ⌘R)Buffer.cpp (408): Buffer::Buffer()
Buffer.cpp (1650): lyx document header finished
Buffer.cpp (1762): preamble finished, now the body.
Buffer.cpp (1791): Finished making LaTeX file.
Buffer.cpp (1792): Row count was 3000.
16:31:01.544: pdflatex  bachelorLYX.texsupport/Systemcall.cpp (243): 
Running: pdflatex  bachelorLYX.tex  /dev/null
16:31:02.284: This is pdfTeX, Version 3.1415926-2.5-1.40.14 
(TeX Live 2013)
16:31:02.284:  restricted \write18 enabled.
16:31:02.307: entering extended mode
16:31:02.308: (./bachelorLYX.tex
16:31:02.308: LaTeX2e 2011/06/27
16:31:02.310: Babel 3.9f and hyphenation patterns for 78 
languages loaded.
16:31:02.323: 
16:31:29.225: bibtex bachelorLYXsupport/Systemcall.cpp 
(243): Running: bibtex bachelorLYX
16:31:30.240: This is BibTeX, Version 0.99d (TeX Live 2013)
16:31:30.241: The top-level auxiliary file: bachelorLYX.aux
16:31:30.241: The style file: plain.bst
16:31:30.242: Database file #1: I deleted the directory Bachelor-
Arbeit_BA_LaTeX_bib_bachelor_bib.bib
16:31:30.243: Warning--I didn't find a database entry for 
smallsignal2010
16:31:30.247: Warning--need editor, key, or series for 
dickreiter97b2 to crossref dickreiter97b1
16:31:30.251: Warning--can't use both author and editor 
fields in zwicker07
16:31:30.252: Warning--empty note in muenster
16:31:30.252: Warning--empty note in saarland12
16:31:30.253: (There were 5 warnings)
16:31:30.259: pdflatex  bachelorLYX.texsupport/Systemcall.cpp 
(243): Running: pdflatex  
bachelorLYX.tex  /dev/null
16:31:30.975: This is pdfTeX, Version 3.1415926-2.5-1.40.14 
(TeX Live 2013)
16:31:30.976:  restricted \write18 enabled.
16:31:31.008: entering extended mode
16:31:31.011: (./bachelorLYX.tex
16:31:31.011: LaTeX2e 2011/06/27
16:31:31.012: Babel 3.9f and hyphenation patterns for 78 
languages loaded.
16:31:31.012: 
16:31:57.364: bibtex bachelorLYXsupport/Systemcall.cpp (243): 
Running: bibtex bachelorLYX
16:31:58.122: This is BibTeX, Version 0.99d (TeX Live 2013)
16:31:58.123: The top-level auxiliary file: bachelorLYX.aux
16:31:58.124: The style file: plain.bst
16:31:58.125: Database file #1: deleted again Bachelor-
Arbeit_BA_LaTeX_bib_bachelor_bib.bib
16:31:58.126: Warning--I didn't find a database entry for 
smallsignal2010
16:31:58.129: Warning--need editor, key, or series for 
dickreiter97b2 to crossref dickreiter97b1
16:31:58.134: Warning--can't use both author and editor 
fields in zwicker07
16:31:58.135: Warning--empty note in muenster
16:31:58.136: Warning--empty note in saarland12
16:31:58.136: (There were 5 warnings)
16:31:58.141: pdflatex  bachelorLYX.texsupport/Systemcall.cpp 
(243): Running: pdflatex  bachelorLYX.tex  /dev/null
16:31:58.872: This is pdfTeX, Version 3.1415926-2.5-1.40.14
 (TeX Live 2013)
16:31:58.873:  restricted \write18 enabled.
16:31:58.898: entering extended mode
16:31:58.900: (./bachelorLYX.tex
16:31:58.900: LaTeX2e 2011/06/27
16:31:58.901: Babel 3.9f and hyphenation patterns for 
78 languages loaded.

PDF output on mac suddenly became very slow

[Michael Bay]

Hello dear LyX community,

I'm quite new with LyX and probably just have been looking at the 
wrong places for answers to my following question, so please, 
if that should be the case, be so kind to tell me a link to the answer ;-)

If not, I'll be happy to learn about what I've been doing wrong.

I've been writing on LyX for one week now, after having been fed up 
with the programming of LaTeX as a novice with a few weeks 
experience in TeX and some knowledge in programming.

The system:
Mac (10.9.4, Mavericks)
LyX version 2.1.1
BibDesk version 1.6.3 (3296)

The problem:
Everything was fine till two days ago, when LyX suddenly decided 
to take two minutes for each output to pdf-preview. 
I'm working on my bachelor's thesis, so the document is 
about 40 pages of text with about 20 graphics, 
probably nothing out of the ordinary.

If my memory is correct, the problem occured after inserting and 
removing some bigger JPG  PNG graphics, in the process of 
finding the best graphics-format. Now none of these graphics are 
still inserted, the floating objects are removed as well. 

What I also did was changing some directories where I stored 
these files in my project-folder, but LyX should warn me, 
if it doesn't find any external files anymore, shouldn't it? 

Well, it doesn't. What it does is stated in the 
(very basic and to some extend german) 
log at the end of this message.

The first thing to catch my eye is the unnamed process 
from (16:31:02.323) to (16:31:29.225), which occurs three times 
and obviously causes the problem with almost 30s of duration.

Any suggestions?

What I've also been trying is enabling the glossary with no 
success to this point. But I've removed all my attempts, 
including the glossary macro at the end of LyX. 
So that - theoretically - should have no influence and is not 
part of my question.

I hope you have some ideas for the further process of problem solving...

With best regards,
Michael


16:30:59.719: Generiere Vorschau ...
16:30:59.761: (buffer-view: ⌘R)Buffer.cpp (408): Buffer::Buffer()
Buffer.cpp (1650): lyx document header finished
Buffer.cpp (1762): preamble finished, now the body.
Buffer.cpp (1791): Finished making LaTeX file.
Buffer.cpp (1792): Row count was 3000.
16:31:01.544: pdflatex  bachelorLYX.texsupport/Systemcall.cpp (243): 
Running: pdflatex  bachelorLYX.tex  /dev/null
16:31:02.284: This is pdfTeX, Version 3.1415926-2.5-1.40.14 
(TeX Live 2013)
16:31:02.284:  restricted \write18 enabled.
16:31:02.307: entering extended mode
16:31:02.308: (./bachelorLYX.tex
16:31:02.308: LaTeX2e 2011/06/27
16:31:02.310: Babel 3.9f and hyphenation patterns for 78 
languages loaded.
16:31:02.323: 
16:31:29.225: bibtex bachelorLYXsupport/Systemcall.cpp 
(243): Running: bibtex bachelorLYX
16:31:30.240: This is BibTeX, Version 0.99d (TeX Live 2013)
16:31:30.241: The top-level auxiliary file: bachelorLYX.aux
16:31:30.241: The style file: plain.bst
16:31:30.242: Database file #1: I deleted the directory Bachelor-
Arbeit_BA_LaTeX_bib_bachelor_bib.bib
16:31:30.243: Warning--I didn't find a database entry for 
smallsignal2010
16:31:30.247: Warning--need editor, key, or series for 
dickreiter97b2 to crossref dickreiter97b1
16:31:30.251: Warning--can't use both author and editor 
fields in zwicker07
16:31:30.252: Warning--empty note in muenster
16:31:30.252: Warning--empty note in saarland12
16:31:30.253: (There were 5 warnings)
16:31:30.259: pdflatex  bachelorLYX.texsupport/Systemcall.cpp 
(243): Running: pdflatex  
bachelorLYX.tex  /dev/null
16:31:30.975: This is pdfTeX, Version 3.1415926-2.5-1.40.14 
(TeX Live 2013)
16:31:30.976:  restricted \write18 enabled.
16:31:31.008: entering extended mode
16:31:31.011: (./bachelorLYX.tex
16:31:31.011: LaTeX2e 2011/06/27
16:31:31.012: Babel 3.9f and hyphenation patterns for 78 
languages loaded.
16:31:31.012: 
16:31:57.364: bibtex bachelorLYXsupport/Systemcall.cpp (243): 
Running: bibtex bachelorLYX
16:31:58.122: This is BibTeX, Version 0.99d (TeX Live 2013)
16:31:58.123: The top-level auxiliary file: bachelorLYX.aux
16:31:58.124: The style file: plain.bst
16:31:58.125: Database file #1: deleted again Bachelor-
Arbeit_BA_LaTeX_bib_bachelor_bib.bib
16:31:58.126: Warning--I didn't find a database entry for 
smallsignal2010
16:31:58.129: Warning--need editor, key, or series for 
dickreiter97b2 to crossref dickreiter97b1
16:31:58.134: Warning--can't use both author and editor 
fields in zwicker07
16:31:58.135: Warning--empty note in muenster
16:31:58.136: Warning--empty note in saarland12
16:31:58.136: (There were 5 warnings)
16:31:58.141: pdflatex  bachelorLYX.texsupport/Systemcall.cpp 
(243): Running: pdflatex  bachelorLYX.tex  /dev/null
16:31:58.872: This is pdfTeX, Version 3.1415926-2.5-1.40.14
 (TeX Live 2013)
16:31:58.873:  restricted \write18 enabled.
16:31:58.898: entering extended mode
16:31:58.900: (./bachelorLYX.tex
16:31:58.900: LaTeX2e 2011/06/27
16:31:58.901: Babel 3.9f and hyphenation patterns for 
78 languages loaded.

PDF output on mac suddenly became very slow

[Michael Bay]

Hello dear LyX community,

I'm quite new with LyX and probably just have been looking at the 
wrong places for answers to my following question, so please, 
if that should be the case, be so kind to tell me a link to the answer ;-)

If not, I'll be happy to learn about what I've been doing wrong.

I've been writing on LyX for one week now, after having been fed up 
with the programming of LaTeX as a novice with a few weeks 
experience in TeX and some knowledge in programming.

The system:
Mac (10.9.4, Mavericks)
LyX version 2.1.1
BibDesk version 1.6.3 (3296)

The problem:
Everything was fine till two days ago, when LyX suddenly decided 
to take two minutes for each output to pdf-preview. 
I'm working on my bachelor's thesis, so the document is 
about 40 pages of text with about 20 graphics, 
probably nothing out of the ordinary.

If my memory is correct, the problem occured after inserting and 
removing some bigger JPG & PNG graphics, in the process of 
finding the best graphics-format. Now none of these graphics are 
still inserted, the floating objects are removed as well. 

What I also did was changing some directories where I stored 
these files in my project-folder, but LyX should warn me, 
if it doesn't find any external files anymore, shouldn't it? 

Well, it doesn't. What it does is stated in the 
(very basic and to some extend german) 
log at the end of this message.

The first thing to catch my eye is the unnamed process 
from (16:31:02.323) to (16:31:29.225), which occurs three times 
and obviously causes the problem with almost 30s of duration.

Any suggestions?

What I've also been trying is enabling the glossary with no 
success to this point. But I've removed all my attempts, 
including the glossary macro at the end of LyX. 
So that - theoretically - should have no influence and is not 
part of my question.

I hope you have some ideas for the further process of problem solving...

With best regards,
Michael


16:30:59.719: Generiere Vorschau ...
16:30:59.761: (buffer-view: ⌘R)Buffer.cpp (408): Buffer::Buffer()
Buffer.cpp (1650): lyx document header finished
Buffer.cpp (1762): preamble finished, now the body.
Buffer.cpp (1791): Finished making LaTeX file.
Buffer.cpp (1792): Row count was 3000.
16:31:01.544: pdflatex  "bachelorLYX.tex"support/Systemcall.cpp (243): 
Running: pdflatex  "bachelorLYX.tex" > /dev/null
16:31:02.284: This is pdfTeX, Version 3.1415926-2.5-1.40.14 
(TeX Live 2013)
16:31:02.284:  restricted \write18 enabled.
16:31:02.307: entering extended mode
16:31:02.308: (./bachelorLYX.tex
16:31:02.308: LaTeX2e <2011/06/27>
16:31:02.310: Babel <3.9f> and hyphenation patterns for 78 
languages loaded.
16:31:02.323: 
16:31:29.225: bibtex "bachelorLYX"support/Systemcall.cpp 
(243): Running: bibtex "bachelorLYX"
16:31:30.240: This is BibTeX, Version 0.99d (TeX Live 2013)
16:31:30.241: The top-level auxiliary file: bachelorLYX.aux
16:31:30.241: The style file: plain.bst
16:31:30.242: Database file #1:  Bachelor-
Arbeit_BA_LaTeX_bib_bachelor_bib.bib
16:31:30.243: Warning--I didn't find a database entry for 
"smallsignal2010"
16:31:30.247: Warning--need editor, key, or series for 
dickreiter97b2 to crossref dickreiter97b1
16:31:30.251: Warning--can't use both author and editor 
fields in zwicker07
16:31:30.252: Warning--empty note in muenster
16:31:30.252: Warning--empty note in saarland12
16:31:30.253: (There were 5 warnings)
16:31:30.259: pdflatex  "bachelorLYX.tex"support/Systemcall.cpp 
(243): Running: pdflatex  
"bachelorLYX.tex" > /dev/null
16:31:30.975: This is pdfTeX, Version 3.1415926-2.5-1.40.14 
(TeX Live 2013)
16:31:30.976:  restricted \write18 enabled.
16:31:31.008: entering extended mode
16:31:31.011: (./bachelorLYX.tex
16:31:31.011: LaTeX2e <2011/06/27>
16:31:31.012: Babel <3.9f> and hyphenation patterns for 78 
languages loaded.
16:31:31.012: 
16:31:57.364: bibtex "bachelorLYX"support/Systemcall.cpp (243): 
Running: bibtex "bachelorLYX"
16:31:58.122: This is BibTeX, Version 0.99d (TeX Live 2013)
16:31:58.123: The top-level auxiliary file: bachelorLYX.aux
16:31:58.124: The style file: plain.bst
16:31:58.125: Database file #1:  Bachelor-
Arbeit_BA_LaTeX_bib_bachelor_bib.bib
16:31:58.126: Warning--I didn't find a database entry for 
"smallsignal2010"
16:31:58.129: Warning--need editor, key, or series for 
dickreiter97b2 to crossref dickreiter97b1
16:31:58.134: Warning--can't use both author and editor 
fields in zwicker07
16:31:58.135: Warning--empty note in muenster
16:31:58.136: Warning--empty note in saarland12
16:31:58.136: (There were 5 warnings)
16:31:58.141: pdflatex  "bachelorLYX.tex"support/Systemcall.cpp 
(243): Running: pdflatex  "bachelorLYX.tex" > /dev/null
16:31:58.872: This is pdfTeX, Version 3.1415926-2.5-1.40.14
 (TeX Live 2013)
16:31:58.873:  restricted \write18 enabled.
16:31:58.898: entering extended mode
16:31:58.900: (./bachelorLYX.tex
16:31:58.900: LaTeX2e <2011/06/27>
16:31:58.901: Babel <3.9f> and hyphenation patterns for 
78 languages loaded.

temporary ruler in pdf output while editing document

[Csikos Bela]

Hello:

When editing documents, occasionally it would be very useful to have

vertical and horizontal rulers at the edges of the document.

The best would be if the pdf viewer had rulers; I don't know any

pdf viewer with such feature.

A workaround could be to insert rulers using latex code. These rulers should

not modify the positions or placement of other elements in the pdf output.

In the final document the code specifying the rulers could be removed,

and the document would look the same as during editing but without the rulers.

Is this possible? How?

Thanks in advance,

bcsikos

Re: temporary ruler in pdf output while editing document

[stefano franchi]

These suggestions may help:

http://tex.stackexchange.com/questions/29310/free-pdf-viewer-allowing-to-measure-in-a-document

I use PDF XChange Viewer
http://www.tracker-software.com/product/downloadsmyself when needed.
It works fine in Linux under Wine. You'll need one of
the other solutions if you're on a Mac, I guess.

Cheers,

Stefano



-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas AM University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: temporary ruler in pdf output while editing document

[Csikos Bela]

stefano franchi stefano.fran...@gmail.com írta:
These suggestions may 
help:http://tex.stackexchange.com/questions/29310/free-pdf-viewer-allowing-to-measure-in-a-document

I use PDF XChange Viewer myself when needed. It works fine in Linux under 
Wine. You#39;ll need one of the other solutions if you#39;re on a Mac, I 
guess.
Cheers,Stefano-- 

It has not only measuring tool but rulers too!  Exactly what I was looking for.

Thank you for the link!

bcsikos

temporary ruler in pdf output while editing document

[Csikos Bela]

Hello:

When editing documents, occasionally it would be very useful to have

vertical and horizontal rulers at the edges of the document.

The best would be if the pdf viewer had rulers; I don't know any

pdf viewer with such feature.

A workaround could be to insert rulers using latex code. These rulers should

not modify the positions or placement of other elements in the pdf output.

In the final document the code specifying the rulers could be removed,

and the document would look the same as during editing but without the rulers.

Is this possible? How?

Thanks in advance,

bcsikos

Re: temporary ruler in pdf output while editing document

[stefano franchi]

These suggestions may help:

http://tex.stackexchange.com/questions/29310/free-pdf-viewer-allowing-to-measure-in-a-document

I use PDF XChange Viewer
http://www.tracker-software.com/product/downloadsmyself when needed.
It works fine in Linux under Wine. You'll need one of
the other solutions if you're on a Mac, I guess.

Cheers,

Stefano



-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas AM University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: temporary ruler in pdf output while editing document

[Csikos Bela]

stefano franchi stefano.fran...@gmail.com írta:
These suggestions may 
help:http://tex.stackexchange.com/questions/29310/free-pdf-viewer-allowing-to-measure-in-a-document

I use PDF XChange Viewer myself when needed. It works fine in Linux under 
Wine. You#39;ll need one of the other solutions if you#39;re on a Mac, I 
guess.
Cheers,Stefano-- 

It has not only measuring tool but rulers too!  Exactly what I was looking for.

Thank you for the link!

bcsikos

temporary ruler in pdf output while editing document

[Csikos Bela]

Hello:

When editing documents, occasionally it would be very useful to have

vertical and horizontal rulers at the edges of the document.

The best would be if the pdf viewer had rulers; I don't know any

pdf viewer with such feature.

A workaround could be to insert rulers using latex code. These rulers should

not modify the positions or placement of other elements in the pdf output.

In the final document the code specifying the rulers could be removed,

and the document would look the same as during editing but without the rulers.

Is this possible? How?

Thanks in advance,

bcsikos

Re: temporary ruler in pdf output while editing document

[stefano franchi]

These suggestions may help:

http://tex.stackexchange.com/questions/29310/free-pdf-viewer-allowing-to-measure-in-a-document

I use PDF XChange Viewer
myself when needed.
It works fine in Linux under Wine. You'll need one of
the other solutions if you're on a Mac, I guess.

Cheers,

Stefano



-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas A University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: temporary ruler in pdf output while editing document

[Csikos Bela]

stefano franchi  írta:
>These suggestions may 
>help:http://tex.stackexchange.com/questions/29310/free-pdf->viewer-allowing-to-measure-in-a-document

>I use PDF XChange Viewer myself when needed. It works fine in Linux under 
>Wine. >Youll need one of the other solutions if youre on a Mac, I 
>guess.
>Cheers,Stefano-- 

It has not only measuring tool but rulers too!  Exactly what I was looking for.

Thank you for the link!

bcsikos

RE: Paragraphs and headings overlapping in pdf output

[Brown, Nelson A. (DFRC-RC)]

I updated miktex and everything is working better.

Sorry for the fuss.

Nelson


From: lyx-users@lists.lyx.org [mailto:lyx-users@lists.lyx.org] On Behalf Of 
Brown, Nelson A. (DFRC-RC)
Sent: Friday, July 12, 2013 11:08 PM
To: lyx-users@lists.lyx.org
Subject: FW: Paragraphs and headings overlapping in pdf output

I'm using the aiaa-tc.cls class v4.0.1 (http://code.google.com/p/aiaa-latex/) 
and LyX 2.0.5.1 in Windows 7.

I'm seeing a strange glitch in the PDF output where headings and paragraph 
texts overlap, or sometimes paragraphs overlap each other. (see links)

https://lh3.googleusercontent.com/-8k4GqMO9DjA/UeDrkUVgeRI/MLk/qvH7041JQT4/w753-h106-no/heading_placement_glitch1.png

https://lh3.googleusercontent.com/-g0e9urc52Ds/UeDrkeeIDzI/MLo/RHI0hCXgm78/w718-h293-no/heading_placement_glitch2.png

As I edit the text, the problem shifts from one section to another. That is, if 
I add some sentences to Section II, the heading overlap problem might stop 
effecting Section III, but starts effecting Section VII.

I haven't found any pattern to it, so far.

Ideas?


Thanks,
Nelson

RE: Paragraphs and headings overlapping in pdf output

[Brown, Nelson A. (DFRC-RC)]

I updated miktex and everything is working better.

Sorry for the fuss.

Nelson


From: lyx-users@lists.lyx.org [mailto:lyx-users@lists.lyx.org] On Behalf Of 
Brown, Nelson A. (DFRC-RC)
Sent: Friday, July 12, 2013 11:08 PM
To: lyx-users@lists.lyx.org
Subject: FW: Paragraphs and headings overlapping in pdf output

I'm using the aiaa-tc.cls class v4.0.1 (http://code.google.com/p/aiaa-latex/) 
and LyX 2.0.5.1 in Windows 7.

I'm seeing a strange glitch in the PDF output where headings and paragraph 
texts overlap, or sometimes paragraphs overlap each other. (see links)

https://lh3.googleusercontent.com/-8k4GqMO9DjA/UeDrkUVgeRI/MLk/qvH7041JQT4/w753-h106-no/heading_placement_glitch1.png

https://lh3.googleusercontent.com/-g0e9urc52Ds/UeDrkeeIDzI/MLo/RHI0hCXgm78/w718-h293-no/heading_placement_glitch2.png

As I edit the text, the problem shifts from one section to another. That is, if 
I add some sentences to Section II, the heading overlap problem might stop 
effecting Section III, but starts effecting Section VII.

I haven't found any pattern to it, so far.

Ideas?


Thanks,
Nelson

RE: Paragraphs and headings overlapping in pdf output

[Brown, Nelson A. (DFRC-RC)]

I updated miktex and everything is working better.

Sorry for the fuss.

Nelson


From: lyx-users@lists.lyx.org [mailto:lyx-users@lists.lyx.org] On Behalf Of 
Brown, Nelson A. (DFRC-RC)
Sent: Friday, July 12, 2013 11:08 PM
To: lyx-users@lists.lyx.org
Subject: FW: Paragraphs and headings overlapping in pdf output

I'm using the "aiaa-tc.cls" class v4.0.1 (http://code.google.com/p/aiaa-latex/) 
and LyX 2.0.5.1 in Windows 7.

I'm seeing a strange glitch in the PDF output where headings and paragraph 
texts overlap, or sometimes paragraphs overlap each other. (see links)

https://lh3.googleusercontent.com/-8k4GqMO9DjA/UeDrkUVgeRI/MLk/qvH7041JQT4/w753-h106-no/heading_placement_glitch1.png

https://lh3.googleusercontent.com/-g0e9urc52Ds/UeDrkeeIDzI/MLo/RHI0hCXgm78/w718-h293-no/heading_placement_glitch2.png

As I edit the text, the problem shifts from one section to another. That is, if 
I add some sentences to Section II, the heading overlap problem might stop 
effecting Section III, but starts effecting Section VII.

I haven't found any pattern to it, so far.

Ideas?


Thanks,
Nelson

FW: Paragraphs and headings overlapping in pdf output

[Brown, Nelson A. (DFRC-RC)]

I'm using the aiaa-tc.cls class v4.0.1 (http://code.google.com/p/aiaa-latex/) 
and LyX 2.0.5.1 in Windows 7.

I'm seeing a strange glitch in the PDF output where headings and paragraph 
texts overlap, or sometimes paragraphs overlap each other. (see links)

https://lh3.googleusercontent.com/-8k4GqMO9DjA/UeDrkUVgeRI/MLk/qvH7041JQT4/w753-h106-no/heading_placement_glitch1.png

https://lh3.googleusercontent.com/-g0e9urc52Ds/UeDrkeeIDzI/MLo/RHI0hCXgm78/w718-h293-no/heading_placement_glitch2.png

As I edit the text, the problem shifts from one section to another. That is, if 
I add some sentences to Section II, the heading overlap problem might stop 
effecting Section III, but starts effecting Section VII.

I haven't found any pattern to it, so far.

Ideas?


Thanks,
Nelson

FW: Paragraphs and headings overlapping in pdf output

[Brown, Nelson A. (DFRC-RC)]

I'm using the aiaa-tc.cls class v4.0.1 (http://code.google.com/p/aiaa-latex/) 
and LyX 2.0.5.1 in Windows 7.

I'm seeing a strange glitch in the PDF output where headings and paragraph 
texts overlap, or sometimes paragraphs overlap each other. (see links)

https://lh3.googleusercontent.com/-8k4GqMO9DjA/UeDrkUVgeRI/MLk/qvH7041JQT4/w753-h106-no/heading_placement_glitch1.png

https://lh3.googleusercontent.com/-g0e9urc52Ds/UeDrkeeIDzI/MLo/RHI0hCXgm78/w718-h293-no/heading_placement_glitch2.png

As I edit the text, the problem shifts from one section to another. That is, if 
I add some sentences to Section II, the heading overlap problem might stop 
effecting Section III, but starts effecting Section VII.

I haven't found any pattern to it, so far.

Ideas?


Thanks,
Nelson

FW: Paragraphs and headings overlapping in pdf output

[Brown, Nelson A. (DFRC-RC)]

I'm using the "aiaa-tc.cls" class v4.0.1 (http://code.google.com/p/aiaa-latex/) 
and LyX 2.0.5.1 in Windows 7.

I'm seeing a strange glitch in the PDF output where headings and paragraph 
texts overlap, or sometimes paragraphs overlap each other. (see links)

https://lh3.googleusercontent.com/-8k4GqMO9DjA/UeDrkUVgeRI/MLk/qvH7041JQT4/w753-h106-no/heading_placement_glitch1.png

https://lh3.googleusercontent.com/-g0e9urc52Ds/UeDrkeeIDzI/MLo/RHI0hCXgm78/w718-h293-no/heading_placement_glitch2.png

As I edit the text, the problem shifts from one section to another. That is, if 
I add some sentences to Section II, the heading overlap problem might stop 
effecting Section III, but starts effecting Section VII.

I haven't found any pattern to it, so far.

Ideas?


Thanks,
Nelson

Re: pdf output disabled for some documents

[Julien Rioux]

On 01/02/2013 6:37 AM, Francesco Montorsi wrote:

Hi all,
I'm having a strange problem with LyX 2.0.5.1,
with latest MikTeX 2.9 packages updated.

Most of the LyX documents I open can be compiled as PDF without troubles.
A LyX file I've got instead may be apparently rendered only as HTML:
when I click on the toolbar button Show other formats all items
Show PDF (...) are disabled; only Show LyXHTML and Show HTML are enabled.
Does anybody has a clue about why this happens?
How can I debug it?

The document uses IEEEtran which has been recently updated,
but I don't think that's the problem since I've got other
(smaller) documents that compile just fine
as PDFs with IEEEtran.

Thanks!
Francesco




Hi Francesco,

Did you figure out your issue? If you can't figure it out, please send a 
small example file that contains the minimum stuff possible to reproduce 
your problem. It guess it has likely something to do with required LaTeX 
packages that are not installed on your system, thus LaTeX export is 
blocked but LyXHTML does not rely on LaTeX and thus it is always 
available as an export option.


Cheers,
Julien

Re: pdf output disabled for some documents

[Julien Rioux]

On 01/02/2013 6:37 AM, Francesco Montorsi wrote:

Hi all,
I'm having a strange problem with LyX 2.0.5.1,
with latest MikTeX 2.9 packages updated.

Most of the LyX documents I open can be compiled as PDF without troubles.
A LyX file I've got instead may be apparently rendered only as HTML:
when I click on the toolbar button Show other formats all items
Show PDF (...) are disabled; only Show LyXHTML and Show HTML are enabled.
Does anybody has a clue about why this happens?
How can I debug it?

The document uses IEEEtran which has been recently updated,
but I don't think that's the problem since I've got other
(smaller) documents that compile just fine
as PDFs with IEEEtran.

Thanks!
Francesco




Hi Francesco,

Did you figure out your issue? If you can't figure it out, please send a 
small example file that contains the minimum stuff possible to reproduce 
your problem. It guess it has likely something to do with required LaTeX 
packages that are not installed on your system, thus LaTeX export is 
blocked but LyXHTML does not rely on LaTeX and thus it is always 
available as an export option.


Cheers,
Julien

Re: pdf output disabled for some documents

[Julien Rioux]

On 01/02/2013 6:37 AM, Francesco Montorsi wrote:

Hi all,
I'm having a strange problem with LyX 2.0.5.1,
with latest MikTeX 2.9 packages updated.

Most of the LyX documents I open can be compiled as PDF without troubles.
A LyX file I've got instead may be apparently rendered only as HTML:
when I click on the toolbar button "Show other formats" all items
"Show PDF (...)" are disabled; only "Show LyXHTML" and "Show HTML" are enabled.
Does anybody has a clue about why this happens?
How can I debug it?

The document uses IEEEtran which has been recently updated,
but I don't think that's the problem since I've got other
(smaller) documents that compile just fine
as PDFs with IEEEtran.

Thanks!
Francesco




Hi Francesco,

Did you figure out your issue? If you can't figure it out, please send a 
small example file that contains the minimum stuff possible to reproduce 
your problem. It guess it has likely something to do with required LaTeX 
packages that are not installed on your system, thus LaTeX export is 
blocked but LyXHTML does not rely on LaTeX and thus it is always 
available as an export option.


Cheers,
Julien

pdf output disabled for some documents

[Francesco Montorsi]

Hi all,
I'm having a strange problem with LyX 2.0.5.1, 
with latest MikTeX 2.9 packages updated.

Most of the LyX documents I open can be compiled as PDF without troubles.
A LyX file I've got instead may be apparently rendered only as HTML: 
when I click on the toolbar button Show other formats all items 
Show PDF (...) are disabled; only Show LyXHTML and Show HTML are enabled.
Does anybody has a clue about why this happens?
How can I debug it?

The document uses IEEEtran which has been recently updated, 
but I don't think that's the problem since I've got other 
(smaller) documents that compile just fine 
as PDFs with IEEEtran.

Thanks!
Francesco

pdf output disabled for some documents

[Francesco Montorsi]

Hi all,
I'm having a strange problem with LyX 2.0.5.1, 
with latest MikTeX 2.9 packages updated.

Most of the LyX documents I open can be compiled as PDF without troubles.
A LyX file I've got instead may be apparently rendered only as HTML: 
when I click on the toolbar button Show other formats all items 
Show PDF (...) are disabled; only Show LyXHTML and Show HTML are enabled.
Does anybody has a clue about why this happens?
How can I debug it?

The document uses IEEEtran which has been recently updated, 
but I don't think that's the problem since I've got other 
(smaller) documents that compile just fine 
as PDFs with IEEEtran.

Thanks!
Francesco

pdf output disabled for some documents

[Francesco Montorsi]

Hi all,
I'm having a strange problem with LyX 2.0.5.1, 
with latest MikTeX 2.9 packages updated.

Most of the LyX documents I open can be compiled as PDF without troubles.
A LyX file I've got instead may be apparently rendered only as HTML: 
when I click on the toolbar button "Show other formats" all items 
"Show PDF (...)" are disabled; only "Show LyXHTML" and "Show HTML" are enabled.
Does anybody has a clue about why this happens?
How can I debug it?

The document uses IEEEtran which has been recently updated, 
but I don't think that's the problem since I've got other 
(smaller) documents that compile just fine 
as PDFs with IEEEtran.

Thanks!
Francesco

Re: No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Am Freitag, 7. Dezember 2012, 16:43:57 schrieb stefano franchi:
 On Thu, Dec 6, 2012 at 3:21 AM, Wolfgang Engelmann 
 
 engelm...@uni-tuebingen.de wrote:
  Am Mittwoch, 5. Dezember 2012, 23:53:51 schrieb stefano franchi:
   I would use the latest stable version (right now, 2.0.5) How to
   install it would depend  on which  Linux distribution  you are
   using. I am on Arch, and installing (stable) Lyx from the official
   package works fine.
  
  I am on Debian squeeze.
 
 Debian Squeeze is still stuck at 2.0.3, I believe.  So it may be worth
 2.0.5 installing from sources. If you managed to successfully compile
 2.1, you should not have troubles with 2.0.5---I assume you'll have all
 the required packages already installed.
 However, I am far from being an expert on Debian. Other people on the
 list may provide more focused advice.
 
 Cheers,
 
 Stefano


Thanks, Stefano

will wait...

Wolfgang

Re: No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Am Freitag, 7. Dezember 2012, 16:43:57 schrieb stefano franchi:
 On Thu, Dec 6, 2012 at 3:21 AM, Wolfgang Engelmann 
 
 engelm...@uni-tuebingen.de wrote:
  Am Mittwoch, 5. Dezember 2012, 23:53:51 schrieb stefano franchi:
   I would use the latest stable version (right now, 2.0.5) How to
   install it would depend  on which  Linux distribution  you are
   using. I am on Arch, and installing (stable) Lyx from the official
   package works fine.
  
  I am on Debian squeeze.
 
 Debian Squeeze is still stuck at 2.0.3, I believe.  So it may be worth
 2.0.5 installing from sources. If you managed to successfully compile
 2.1, you should not have troubles with 2.0.5---I assume you'll have all
 the required packages already installed.
 However, I am far from being an expert on Debian. Other people on the
 list may provide more focused advice.
 
 Cheers,
 
 Stefano


Thanks, Stefano

will wait...

Wolfgang

Re: No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Am Freitag, 7. Dezember 2012, 16:43:57 schrieb stefano franchi:
> On Thu, Dec 6, 2012 at 3:21 AM, Wolfgang Engelmann <
> 
> engelm...@uni-tuebingen.de> wrote:
> > Am Mittwoch, 5. Dezember 2012, 23:53:51 schrieb stefano franchi:
> > > I would use the latest stable version (right now, 2.0.5) How to
> > > install it would depend  on which  Linux distribution  you are
> > > using. I am on Arch, and installing (stable) Lyx from the official
> > > package works fine.
> > 
> > I am on Debian squeeze.
> 
> Debian Squeeze is still stuck at 2.0.3, I believe.  So it may be worth
> 2.0.5 installing from sources. If you managed to successfully compile
> 2.1, you should not have troubles with 2.0.5---I assume you'll have all
> the required packages already installed.
> However, I am far from being an expert on Debian. Other people on the
> list may provide more focused advice.
> 
> Cheers,
> 
> Stefano


Thanks, Stefano

will wait...

Wolfgang

Re: No references in pdf output after change to texlive2012

[stefano franchi]

On Thu, Dec 6, 2012 at 3:21 AM, Wolfgang Engelmann 
engelm...@uni-tuebingen.de wrote:

 Am Mittwoch, 5. Dezember 2012, 23:53:51 schrieb stefano franchi:
  I would use the latest stable version (right now, 2.0.5) How to install
  it would depend  on which  Linux distribution  you are using. I am on
  Arch, and installing (stable) Lyx from the official package works fine.

 I am on Debian squeeze.



Debian Squeeze is still stuck at 2.0.3, I believe.  So it may be worth
2.0.5 installing from sources. If you managed to successfully compile 2.1,
you should not have troubles with 2.0.5---I assume you'll have all the
required packages already installed.
However, I am far from being an expert on Debian. Other people on the list
may provide more focused advice.

Cheers,

Stefano







-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas AM University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: No references in pdf output after change to texlive2012

[stefano franchi]

On Thu, Dec 6, 2012 at 3:21 AM, Wolfgang Engelmann 
engelm...@uni-tuebingen.de wrote:

 Am Mittwoch, 5. Dezember 2012, 23:53:51 schrieb stefano franchi:
  I would use the latest stable version (right now, 2.0.5) How to install
  it would depend  on which  Linux distribution  you are using. I am on
  Arch, and installing (stable) Lyx from the official package works fine.

 I am on Debian squeeze.



Debian Squeeze is still stuck at 2.0.3, I believe.  So it may be worth
2.0.5 installing from sources. If you managed to successfully compile 2.1,
you should not have troubles with 2.0.5---I assume you'll have all the
required packages already installed.
However, I am far from being an expert on Debian. Other people on the list
may provide more focused advice.

Cheers,

Stefano







-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas AM University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: No references in pdf output after change to texlive2012

[stefano franchi]

On Thu, Dec 6, 2012 at 3:21 AM, Wolfgang Engelmann <
engelm...@uni-tuebingen.de> wrote:

> Am Mittwoch, 5. Dezember 2012, 23:53:51 schrieb stefano franchi:
> > I would use the latest stable version (right now, 2.0.5) How to install
> > it would depend  on which  Linux distribution  you are using. I am on
> > Arch, and installing (stable) Lyx from the official package works fine.
>
> I am on Debian squeeze.
>


Debian Squeeze is still stuck at 2.0.3, I believe.  So it may be worth
2.0.5 installing from sources. If you managed to successfully compile 2.1,
you should not have troubles with 2.0.5---I assume you'll have all the
required packages already installed.
However, I am far from being an expert on Debian. Other people on the list
may provide more focused advice.

Cheers,

Stefano







-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas A University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Am Mittwoch, 5. Dezember 2012, 23:53:51 schrieb stefano franchi:

Thanks, Stefano:

 On Wed, Dec 5, 2012 at 7:53 AM, Wolfgang Engelmann 
 
 engelm...@uni-tuebingen.de wrote:
  Am Samstag, 1. Dezember 2012, 18:37:00 schrieb stefano franchi:
  
  after a few days of abstinence from the PC I started again today and,
  surprise, the citations and references are all rendering ok in the pdf
  output.
 
 Glad to hear that. The computing gods may have decided to smile on
 you...

I am sure it was just the reboot
 
  As to your question: I somehow managed to get this version via svn to
  work and hesitate to change it since I am very good in ending in an
  utter chaos. So unless you can point me to a safe way of installing
  the version of LyX, which you would recommend, I would stick to it.
 
 I would use the latest stable version (right now, 2.0.5) How to install
 it would depend  on which  Linux distribution  you are using. I am on
 Arch, and installing (stable) Lyx from the official package works fine.

I am on Debian squeeze.

Wolfgang

Re: No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Am Mittwoch, 5. Dezember 2012, 23:53:51 schrieb stefano franchi:

Thanks, Stefano:

 On Wed, Dec 5, 2012 at 7:53 AM, Wolfgang Engelmann 
 
 engelm...@uni-tuebingen.de wrote:
  Am Samstag, 1. Dezember 2012, 18:37:00 schrieb stefano franchi:
  
  after a few days of abstinence from the PC I started again today and,
  surprise, the citations and references are all rendering ok in the pdf
  output.
 
 Glad to hear that. The computing gods may have decided to smile on
 you...

I am sure it was just the reboot
 
  As to your question: I somehow managed to get this version via svn to
  work and hesitate to change it since I am very good in ending in an
  utter chaos. So unless you can point me to a safe way of installing
  the version of LyX, which you would recommend, I would stick to it.
 
 I would use the latest stable version (right now, 2.0.5) How to install
 it would depend  on which  Linux distribution  you are using. I am on
 Arch, and installing (stable) Lyx from the official package works fine.

I am on Debian squeeze.

Wolfgang

Re: No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Am Mittwoch, 5. Dezember 2012, 23:53:51 schrieb stefano franchi:

Thanks, Stefano:

> On Wed, Dec 5, 2012 at 7:53 AM, Wolfgang Engelmann <
> 
> engelm...@uni-tuebingen.de> wrote:
> > Am Samstag, 1. Dezember 2012, 18:37:00 schrieb stefano franchi:
> > 
> > after a few days of abstinence from the PC I started again today and,
> > surprise, the citations and references are all rendering ok in the pdf
> > output.
> 
> Glad to hear that. The computing gods may have decided to smile on
> you...

I am sure it was just the reboot
> 
> > As to your question: I somehow managed to get this version via svn to
> > work and hesitate to change it since I am very good in ending in an
> > utter chaos. So unless you can point me to a safe way of installing
> > the version of LyX, which you would recommend, I would stick to it.
> 
> I would use the latest stable version (right now, 2.0.5) How to install
> it would depend  on which  Linux distribution  you are using. I am on
> Arch, and installing (stable) Lyx from the official package works fine.

I am on Debian squeeze.

Wolfgang

Re: No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Am Samstag, 1. Dezember 2012, 18:37:00 schrieb stefano franchi:
 Hi Wolfgang,
 
 you file compiles fine here (I believe, I am not sure exactly what your
 desired output is). See pdf below.
 
 I think you may have something wrong with your environment. Again, check
 the bibtex log in DocumentLatex Log  Bibtex
 
 One question: why are you using the unreleased trunk version of lyx? In
 my opinion, it's never a good idea to use development-level software in
 a production environment.
 
 Cheers,
 
 Stefano

Hi, Stefano,

after a few days of abstinence from the PC I started again today and, 
surprise, the citations and references are all rendering ok in the pdf 
output. 

As to your question: I somehow managed to get this version via svn to work 
and hesitate to change it since I am very good in ending in an utter chaos. 
So unless you can point me to a safe way of installing the version of LyX, 
which you would recommend, I would stick to it. 

Thanks to you and all the others for helping me and for your patiences with 
me.

Yours,

Wolfgang

Re: No references in pdf output after change to texlive2012

[stefano franchi]

On Wed, Dec 5, 2012 at 7:53 AM, Wolfgang Engelmann 
engelm...@uni-tuebingen.de wrote:

 Am Samstag, 1. Dezember 2012, 18:37:00 schrieb stefano franchi:

 after a few days of abstinence from the PC I started again today and,
 surprise, the citations and references are all rendering ok in the pdf
 output.


Glad to hear that. The computing gods may have decided to smile on you...



 As to your question: I somehow managed to get this version via svn to work
 and hesitate to change it since I am very good in ending in an utter chaos.
 So unless you can point me to a safe way of installing the version of LyX,
 which you would recommend, I would stick to it.


I would use the latest stable version (right now, 2.0.5) How to install it
would depend  on which  Linux distribution  you are using. I am on Arch,
and installing (stable) Lyx from the official package works fine.  I do
keep a more or less updated version of (unstable) trunk for testing
purposes, but I would not use it for production. The file format is not
(nor is it supposed to be) stable, for instance, and that may create
problems.
For Ubuntu, using the PPA seem to be working fine as well for many users,
but I am not a regular Ubuntu user.

Best,

Stefano


-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas AM University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Am Samstag, 1. Dezember 2012, 18:37:00 schrieb stefano franchi:
 Hi Wolfgang,
 
 you file compiles fine here (I believe, I am not sure exactly what your
 desired output is). See pdf below.
 
 I think you may have something wrong with your environment. Again, check
 the bibtex log in DocumentLatex Log  Bibtex
 
 One question: why are you using the unreleased trunk version of lyx? In
 my opinion, it's never a good idea to use development-level software in
 a production environment.
 
 Cheers,
 
 Stefano

Hi, Stefano,

after a few days of abstinence from the PC I started again today and, 
surprise, the citations and references are all rendering ok in the pdf 
output. 

As to your question: I somehow managed to get this version via svn to work 
and hesitate to change it since I am very good in ending in an utter chaos. 
So unless you can point me to a safe way of installing the version of LyX, 
which you would recommend, I would stick to it. 

Thanks to you and all the others for helping me and for your patiences with 
me.

Yours,

Wolfgang

Re: No references in pdf output after change to texlive2012

[stefano franchi]

On Wed, Dec 5, 2012 at 7:53 AM, Wolfgang Engelmann 
engelm...@uni-tuebingen.de wrote:

 Am Samstag, 1. Dezember 2012, 18:37:00 schrieb stefano franchi:

 after a few days of abstinence from the PC I started again today and,
 surprise, the citations and references are all rendering ok in the pdf
 output.


Glad to hear that. The computing gods may have decided to smile on you...



 As to your question: I somehow managed to get this version via svn to work
 and hesitate to change it since I am very good in ending in an utter chaos.
 So unless you can point me to a safe way of installing the version of LyX,
 which you would recommend, I would stick to it.


I would use the latest stable version (right now, 2.0.5) How to install it
would depend  on which  Linux distribution  you are using. I am on Arch,
and installing (stable) Lyx from the official package works fine.  I do
keep a more or less updated version of (unstable) trunk for testing
purposes, but I would not use it for production. The file format is not
(nor is it supposed to be) stable, for instance, and that may create
problems.
For Ubuntu, using the PPA seem to be working fine as well for many users,
but I am not a regular Ubuntu user.

Best,

Stefano


-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas AM University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Am Samstag, 1. Dezember 2012, 18:37:00 schrieb stefano franchi:
> Hi Wolfgang,
> 
> you file compiles fine here (I believe, I am not sure exactly what your
> desired output is). See pdf below.
> 
> I think you may have something wrong with your environment. Again, check
> the bibtex log in Document>>Latex Log >> Bibtex
> 
> One question: why are you using the unreleased trunk version of lyx? In
> my opinion, it's never a good idea to use development-level software in
> a production environment.
> 
> Cheers,
> 
> Stefano

Hi, Stefano,

after a few days of abstinence from the PC I started again today and, 
surprise, the citations and references are all rendering ok in the pdf 
output. 

As to your question: I somehow managed to get this version via svn to work 
and hesitate to change it since I am very good in ending in an utter chaos. 
So unless you can point me to a safe way of installing the version of LyX, 
which you would recommend, I would stick to it. 

Thanks to you and all the others for helping me and for your patiences with 
me.

Yours,

Wolfgang

Re: No references in pdf output after change to texlive2012

[stefano franchi]

On Wed, Dec 5, 2012 at 7:53 AM, Wolfgang Engelmann <
engelm...@uni-tuebingen.de> wrote:

> Am Samstag, 1. Dezember 2012, 18:37:00 schrieb stefano franchi:
>
> after a few days of abstinence from the PC I started again today and,
> surprise, the citations and references are all rendering ok in the pdf
> output.
>
>
Glad to hear that. The computing gods may have decided to smile on you...



> As to your question: I somehow managed to get this version via svn to work
> and hesitate to change it since I am very good in ending in an utter chaos.
> So unless you can point me to a safe way of installing the version of LyX,
> which you would recommend, I would stick to it.
>
>
I would use the latest stable version (right now, 2.0.5) How to install it
would depend  on which  Linux distribution  you are using. I am on Arch,
and installing (stable) Lyx from the official package works fine.  I do
keep a more or less updated version of (unstable) trunk for testing
purposes, but I would not use it for production. The file format is not
(nor is it supposed to be) stable, for instance, and that may create
problems.
For Ubuntu, using the PPA seem to be working fine as well for many users,
but I am not a regular Ubuntu user.

Best,

Stefano


-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas A University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Am Samstag, 1. Dezember 2012, 15:54:55 schrieb Wolfgang Engelmann:

just tried to export the pdf from the Embedded objects in Help and it 
displays both citations and references.

So something must be wrong with my settings.

Wolfgang

 Am Freitag, 30. November 2012, 23:28:55 schrieben Sie:
  Whenever your ref disappear, the first suspicion is that biber/biber
  cannot find the bib file. The second is  that bibtex/biber themselves
  have disappeared (i.e. lyx cannot find them).
  Have you checked their log (DocumentLaTeX Log, then Bibtex from
  the drop down menu)?  What does it say?
  
  Cheers,
  
  Stefano
 
 Hi, Stefano,
 and thanks.
 
 Could you or somebody else kindly check the included short file (bib
 file also added).
 If  I run it under lyx, it does not show with my setup the citation and
 the references. If I export the tex file and run latex and bibtex (3
 times) and do dvips it shows the reference, but not the citation (a ?).
 
 The latex logfile tells me the following
 Package natbib Warning: Citation `Silver2011' on page 1 undefined on
 input line
  72.
 No file aTest.bbl.
 Package natbib Warning: There were undefined citations.
 
 I had tried it with my former texlive2011 also, same problem. Note, that
 I do not use biber, since there is no Vancouver layout available. I
 might have forgotten to set something back from the biber setup, but an
 old file does not work either.
 
 I am baffled.
 
 Wolfgang


-- 
-
Wolfgang Engelmann
Schlossgartenstrasse 22
D-72070 Tübingen
Tel 07071 68325

Re: No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Am Samstag, 1. Dezember 2012, 17:16:23 schrieb stefano franchi:
 Wolfgang,
 
 there were no files attached to your message.
 
 Cold you send them again?
 
 Best,
 
 Stefano

Sorry, here they are

Wolfgang
 
 
 On Sat, Dec 1, 2012 at 8:54 AM, Wolfgang Engelmann 
 
 engelm...@uni-tuebingen.de wrote:
  Am Freitag, 30. November 2012, 23:28:55 schrieben Sie:
   Whenever your ref disappear, the first suspicion is that biber/biber
   cannot find the bib file. The second is  that bibtex/biber
   themselves have disappeared (i.e. lyx cannot find them).
   Have you checked their log (DocumentLaTeX Log, then Bibtex from
   the drop down menu)?  What does it say?
   
   Cheers,
   
   Stefano
  
  Hi, Stefano,
  and thanks.
  
  Could you or somebody else kindly check the included short file (bib
  file also added).
  If  I run it under lyx, it does not show with my setup the citation
  and the references. If I export the tex file and run latex and bibtex
  (3 times) and do dvips it shows the reference, but not the citation
  (a ?).
  
  The latex logfile tells me the following
  Package natbib Warning: Citation `Silver2011' on page 1 undefined on
  input line
  
   72.
  
  No file aTest.bbl.
  Package natbib Warning: There were undefined citations.
  
  I had tried it with my former texlive2011 also, same problem. Note,
  that I do not use biber, since there is no Vancouver layout
  available. I might have forgotten to set something back from the
  biber setup, but an old file does not work either.
  
  I am baffled.
  
  Wolfgang


-- 
-
Wolfgang Engelmann
Schlossgartenstrasse 22
D-72070 Tübingen
Tel 07071 68325


aTest.lyx
Description: application/lyx
% This file was created with JabRef 2.6.
% Encoding: ISO8859_1

@ARTICLE{Silver2011,
  author = {Rae Silver and Peter D Balsam and Matthew P Butler and Joseph LeSauter},
  title = {Food anticipation depends on oscillators and memories in both body
	and brain.},
  journal = {Physiol Behav},
  year = {2011},
  volume = {104},
  pages = {562--571},
  abstract = {Despite the importance of learning and circadian rhythms to feeding,
	there has been relatively little effort to integrate these separate
	lines of research. 
	
	
	In this review, we focus on how light and food entrainable oscillators
	contribute to the anticipation of food. In particular, we examine
	the evidence for temporal conditioning of food entrainable oscillators
	throughout the body. The evidence suggests a shift away from previous
	notions of a single locus or neural network of food entrainable oscillators
	to a distributed system involving dynamic feedback among cells of
	the body and brain. 
	
	
	Several recent advances, including documentation of peroxiredoxin
	metabolic circadian oscillation and anticipatory behavior in the
	absence of a central nervous system, support the possibility of conditioned
	signals from the periphery in determining anticipatory behavior.
	
	
	
	Individuals learn to detect changes in internal and external signals
	that occur as a consequence of the brain and body preparing for an
	impending meal. Cues temporally near and far from actual energy content
	can then be used to optimize responses to temporally predictable
	and unpredictable cues in the environment.},
  institution = {Department of Psychology, Columbia University, 1190 Amsterdam Avenue,
	New York, NY 10027, USA. q...@columbia.edu},
  keywords = {Animals; Anticipation, Psychological, physiology; Biological Clocks,
	physiology; Brain, physiology; Feeding Behavior, physiology/psychology;
	Humans; Memory, physiology; Models, Biological; Psychophysiology},
  language = {eng},
  medline-pst = {ppublish},
  owner = {wolfgang},
  pii = {S0031-9384(11)00303-9},
  pmid = {21664916},
  timestamp = {2012.05.19}
}

@comment{jabref-meta: selector_publisher:}

@comment{jabref-meta: selector_author:}

@comment{jabref-meta: selector_journal:}

@comment{jabref-meta: selector_keywords:}

Re: No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Am Samstag, 1. Dezember 2012, 15:54:55 schrieb Wolfgang Engelmann:

just tried to export the pdf from the Embedded objects in Help and it 
displays both citations and references.

So something must be wrong with my settings.

Wolfgang

 Am Freitag, 30. November 2012, 23:28:55 schrieben Sie:
  Whenever your ref disappear, the first suspicion is that biber/biber
  cannot find the bib file. The second is  that bibtex/biber themselves
  have disappeared (i.e. lyx cannot find them).
  Have you checked their log (DocumentLaTeX Log, then Bibtex from
  the drop down menu)?  What does it say?
  
  Cheers,
  
  Stefano
 
 Hi, Stefano,
 and thanks.
 
 Could you or somebody else kindly check the included short file (bib
 file also added).
 If  I run it under lyx, it does not show with my setup the citation and
 the references. If I export the tex file and run latex and bibtex (3
 times) and do dvips it shows the reference, but not the citation (a ?).
 
 The latex logfile tells me the following
 Package natbib Warning: Citation `Silver2011' on page 1 undefined on
 input line
  72.
 No file aTest.bbl.
 Package natbib Warning: There were undefined citations.
 
 I had tried it with my former texlive2011 also, same problem. Note, that
 I do not use biber, since there is no Vancouver layout available. I
 might have forgotten to set something back from the biber setup, but an
 old file does not work either.
 
 I am baffled.
 
 Wolfgang


-- 
-
Wolfgang Engelmann
Schlossgartenstrasse 22
D-72070 Tübingen
Tel 07071 68325

Re: No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Am Samstag, 1. Dezember 2012, 17:16:23 schrieb stefano franchi:
 Wolfgang,
 
 there were no files attached to your message.
 
 Cold you send them again?
 
 Best,
 
 Stefano

Sorry, here they are

Wolfgang
 
 
 On Sat, Dec 1, 2012 at 8:54 AM, Wolfgang Engelmann 
 
 engelm...@uni-tuebingen.de wrote:
  Am Freitag, 30. November 2012, 23:28:55 schrieben Sie:
   Whenever your ref disappear, the first suspicion is that biber/biber
   cannot find the bib file. The second is  that bibtex/biber
   themselves have disappeared (i.e. lyx cannot find them).
   Have you checked their log (DocumentLaTeX Log, then Bibtex from
   the drop down menu)?  What does it say?
   
   Cheers,
   
   Stefano
  
  Hi, Stefano,
  and thanks.
  
  Could you or somebody else kindly check the included short file (bib
  file also added).
  If  I run it under lyx, it does not show with my setup the citation
  and the references. If I export the tex file and run latex and bibtex
  (3 times) and do dvips it shows the reference, but not the citation
  (a ?).
  
  The latex logfile tells me the following
  Package natbib Warning: Citation `Silver2011' on page 1 undefined on
  input line
  
   72.
  
  No file aTest.bbl.
  Package natbib Warning: There were undefined citations.
  
  I had tried it with my former texlive2011 also, same problem. Note,
  that I do not use biber, since there is no Vancouver layout
  available. I might have forgotten to set something back from the
  biber setup, but an old file does not work either.
  
  I am baffled.
  
  Wolfgang


-- 
-
Wolfgang Engelmann
Schlossgartenstrasse 22
D-72070 Tübingen
Tel 07071 68325


aTest.lyx
Description: application/lyx
% This file was created with JabRef 2.6.
% Encoding: ISO8859_1

@ARTICLE{Silver2011,
  author = {Rae Silver and Peter D Balsam and Matthew P Butler and Joseph LeSauter},
  title = {Food anticipation depends on oscillators and memories in both body
	and brain.},
  journal = {Physiol Behav},
  year = {2011},
  volume = {104},
  pages = {562--571},
  abstract = {Despite the importance of learning and circadian rhythms to feeding,
	there has been relatively little effort to integrate these separate
	lines of research. 
	
	
	In this review, we focus on how light and food entrainable oscillators
	contribute to the anticipation of food. In particular, we examine
	the evidence for temporal conditioning of food entrainable oscillators
	throughout the body. The evidence suggests a shift away from previous
	notions of a single locus or neural network of food entrainable oscillators
	to a distributed system involving dynamic feedback among cells of
	the body and brain. 
	
	
	Several recent advances, including documentation of peroxiredoxin
	metabolic circadian oscillation and anticipatory behavior in the
	absence of a central nervous system, support the possibility of conditioned
	signals from the periphery in determining anticipatory behavior.
	
	
	
	Individuals learn to detect changes in internal and external signals
	that occur as a consequence of the brain and body preparing for an
	impending meal. Cues temporally near and far from actual energy content
	can then be used to optimize responses to temporally predictable
	and unpredictable cues in the environment.},
  institution = {Department of Psychology, Columbia University, 1190 Amsterdam Avenue,
	New York, NY 10027, USA. q...@columbia.edu},
  keywords = {Animals; Anticipation, Psychological, physiology; Biological Clocks,
	physiology; Brain, physiology; Feeding Behavior, physiology/psychology;
	Humans; Memory, physiology; Models, Biological; Psychophysiology},
  language = {eng},
  medline-pst = {ppublish},
  owner = {wolfgang},
  pii = {S0031-9384(11)00303-9},
  pmid = {21664916},
  timestamp = {2012.05.19}
}

@comment{jabref-meta: selector_publisher:}

@comment{jabref-meta: selector_author:}

@comment{jabref-meta: selector_journal:}

@comment{jabref-meta: selector_keywords:}

Re: No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Am Samstag, 1. Dezember 2012, 15:54:55 schrieb Wolfgang Engelmann:

just tried to export the pdf from the Embedded objects in Help and it 
displays both citations and references.

So something must be wrong with my settings.

Wolfgang

> Am Freitag, 30. November 2012, 23:28:55 schrieben Sie:
> > Whenever your ref disappear, the first suspicion is that biber/biber
> > cannot find the bib file. The second is  that bibtex/biber themselves
> > have disappeared (i.e. lyx cannot find them).
> > Have you checked their log (Document>>LaTeX Log, then "Bibtex" from
> > the drop down menu)?  What does it say?
> > 
> > Cheers,
> > 
> > Stefano
> 
> Hi, Stefano,
> and thanks.
> 
> Could you or somebody else kindly check the included short file (bib
> file also added).
> If  I run it under lyx, it does not show with my setup the citation and
> the references. If I export the tex file and run latex and bibtex (3
> times) and do dvips it shows the reference, but not the citation (a ?).
> 
> The latex logfile tells me the following
> Package natbib Warning: Citation `Silver2011' on page 1 undefined on
> input line
>  72.
> No file aTest.bbl.
> Package natbib Warning: There were undefined citations.
> 
> I had tried it with my former texlive2011 also, same problem. Note, that
> I do not use biber, since there is no Vancouver layout available. I
> might have forgotten to set something back from the biber setup, but an
> old file does not work either.
> 
> I am baffled.
> 
> Wolfgang


-- 
-
Wolfgang Engelmann
Schlossgartenstrasse 22
D-72070 Tübingen
Tel 07071 68325

Re: No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Am Samstag, 1. Dezember 2012, 17:16:23 schrieb stefano franchi:
> Wolfgang,
> 
> there were no files attached to your message.
> 
> Cold you send them again?
> 
> Best,
> 
> Stefano

Sorry, here they are

Wolfgang
> 
> 
> On Sat, Dec 1, 2012 at 8:54 AM, Wolfgang Engelmann <
> 
> engelm...@uni-tuebingen.de> wrote:
> > Am Freitag, 30. November 2012, 23:28:55 schrieben Sie:
> > > Whenever your ref disappear, the first suspicion is that biber/biber
> > > cannot find the bib file. The second is  that bibtex/biber
> > > themselves have disappeared (i.e. lyx cannot find them).
> > > Have you checked their log (Document>>LaTeX Log, then "Bibtex" from
> > > the drop down menu)?  What does it say?
> > > 
> > > Cheers,
> > > 
> > > Stefano
> > 
> > Hi, Stefano,
> > and thanks.
> > 
> > Could you or somebody else kindly check the included short file (bib
> > file also added).
> > If  I run it under lyx, it does not show with my setup the citation
> > and the references. If I export the tex file and run latex and bibtex
> > (3 times) and do dvips it shows the reference, but not the citation
> > (a ?).
> > 
> > The latex logfile tells me the following
> > Package natbib Warning: Citation `Silver2011' on page 1 undefined on
> > input line
> > 
> >  72.
> > 
> > No file aTest.bbl.
> > Package natbib Warning: There were undefined citations.
> > 
> > I had tried it with my former texlive2011 also, same problem. Note,
> > that I do not use biber, since there is no Vancouver layout
> > available. I might have forgotten to set something back from the
> > biber setup, but an old file does not work either.
> > 
> > I am baffled.
> > 
> > Wolfgang


-- 
-
Wolfgang Engelmann
Schlossgartenstrasse 22
D-72070 Tübingen
Tel 07071 68325


aTest.lyx
Description: application/lyx
% This file was created with JabRef 2.6.
% Encoding: ISO8859_1

@ARTICLE{Silver2011,
  author = {Rae Silver and Peter D Balsam and Matthew P Butler and Joseph LeSauter},
  title = {Food anticipation depends on oscillators and memories in both body
	and brain.},
  journal = {Physiol Behav},
  year = {2011},
  volume = {104},
  pages = {562--571},
  abstract = {Despite the importance of learning and circadian rhythms to feeding,
	there has been relatively little effort to integrate these separate
	lines of research. 
	
	
	In this review, we focus on how light and food entrainable oscillators
	contribute to the anticipation of food. In particular, we examine
	the evidence for temporal conditioning of food entrainable oscillators
	throughout the body. The evidence suggests a shift away from previous
	notions of a single locus or neural network of food entrainable oscillators
	to a distributed system involving dynamic feedback among cells of
	the body and brain. 
	
	
	Several recent advances, including documentation of peroxiredoxin
	metabolic circadian oscillation and anticipatory behavior in the
	absence of a central nervous system, support the possibility of conditioned
	signals from the periphery in determining anticipatory behavior.
	
	
	
	Individuals learn to detect changes in internal and external signals
	that occur as a consequence of the brain and body preparing for an
	impending meal. Cues temporally near and far from actual energy content
	can then be used to optimize responses to temporally predictable
	and unpredictable cues in the environment.},
  institution = {Department of Psychology, Columbia University, 1190 Amsterdam Avenue,
	New York, NY 10027, USA. q...@columbia.edu},
  keywords = {Animals; Anticipation, Psychological, physiology; Biological Clocks,
	physiology; Brain, physiology; Feeding Behavior, physiology/psychology;
	Humans; Memory, physiology; Models, Biological; Psychophysiology},
  language = {eng},
  medline-pst = {ppublish},
  owner = {wolfgang},
  pii = {S0031-9384(11)00303-9},
  pmid = {21664916},
  timestamp = {2012.05.19}
}

@comment{jabref-meta: selector_publisher:}

@comment{jabref-meta: selector_author:}

@comment{jabref-meta: selector_journal:}

@comment{jabref-meta: selector_keywords:}

No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Hello,

I changed from  texlive2011 to  texlive2012 and get thereafter in my Koma 
book a ? instead of the citations and no references in the pdf output of 
the lyx file. The log file tells me

Package natbib Warning: Citation `Hennessey1991' on page 1 undefined on 
input line 124.

[1

{/mnt/sda/home/wolfgang/texlive/2012/texmf-
var/fonts/map/pdftex/updmap/pdftex.map}]
LaTeX Font Info:Font shape `T1/phv/bx/n' in size 12 not available
(Font)  Font shape `T1/phv/b/n' tried instead on input line 
135.

Package natbib Warning: Citation `Panda2004' on page 2 undefined on input 
line 
152.

Is the missing font the cause and where do I get it resp. which other font 
can I use? I am under debian-linux

Wolfgang

Re: No references in pdf output after change to texlive2012

[Scott Kostyshak]

On Fri, Nov 30, 2012 at 11:14 AM, Wolfgang Engelmann
engelm...@uni-tuebingen.de wrote:
 Hello,

 I changed from  texlive2011 to  texlive2012

Did you run Tools  reconfigure ?

Scott

Re: No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Am Freitag, 30. November 2012, 17:15:23 schrieb Scott Kostyshak:
 On Fri, Nov 30, 2012 at 11:14 AM, Wolfgang Engelmann
 
 engelm...@uni-tuebingen.de wrote:
  Hello,
  
  I changed from  texlive2011 to  texlive2012
 
 Did you run Tools  reconfigure ?

yes, but same problem 

Wolfgang

Re: No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Am Freitag, 30. November 2012, 20:43:01 schrieb Wolfgang Engelmann:
 Am Freitag, 30. November 2012, 17:15:23 schrieb Scott Kostyshak:
  On Fri, Nov 30, 2012 at 11:14 AM, Wolfgang Engelmann
  
  engelm...@uni-tuebingen.de wrote:
   Hello,
   
   I changed from  texlive2011 to  texlive2012
  
  Did you run Tools  reconfigure ?
 
 yes, but same problem
 
 Wolfgang

I changed ~/.profile back to texlive2011,
as it was before and which used to work for the refs and cites in my 
documents. (texhash on user and as root, reconfigure done)

But still no cites and refs. Strange!

Any ideas?

Wolfgang

Re: No references in pdf output after change to texlive2012

[stefano franchi]

Whenever your ref disappear, the first suspicion is that biber/biber cannot
find the bib file. The second is  that bibtex/biber themselves have
disappeared (i.e. lyx cannot find them).
Have you checked their log (DocumentLaTeX Log, then Bibtex from the
drop down menu)?  What does it say?

Cheers,

Stefano


On Fri, Nov 30, 2012 at 2:30 PM, Wolfgang Engelmann 
engelm...@uni-tuebingen.de wrote:

 Am Freitag, 30. November 2012, 20:43:01 schrieb Wolfgang Engelmann:
  Am Freitag, 30. November 2012, 17:15:23 schrieb Scott Kostyshak:
   On Fri, Nov 30, 2012 at 11:14 AM, Wolfgang Engelmann
  
   engelm...@uni-tuebingen.de wrote:
Hello,
   
I changed from  texlive2011 to  texlive2012
  
   Did you run Tools  reconfigure ?
 
  yes, but same problem
 
  Wolfgang

 I changed ~/.profile back to texlive2011,
 as it was before and which used to work for the refs and cites in my
 documents. (texhash on user and as root, reconfigure done)

 But still no cites and refs. Strange!

 Any ideas?

 Wolfgang




-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas AM University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Hello,

I changed from  texlive2011 to  texlive2012 and get thereafter in my Koma 
book a ? instead of the citations and no references in the pdf output of 
the lyx file. The log file tells me

Package natbib Warning: Citation `Hennessey1991' on page 1 undefined on 
input line 124.

[1

{/mnt/sda/home/wolfgang/texlive/2012/texmf-
var/fonts/map/pdftex/updmap/pdftex.map}]
LaTeX Font Info:Font shape `T1/phv/bx/n' in size 12 not available
(Font)  Font shape `T1/phv/b/n' tried instead on input line 
135.

Package natbib Warning: Citation `Panda2004' on page 2 undefined on input 
line 
152.

Is the missing font the cause and where do I get it resp. which other font 
can I use? I am under debian-linux

Wolfgang

Re: No references in pdf output after change to texlive2012

[Scott Kostyshak]

On Fri, Nov 30, 2012 at 11:14 AM, Wolfgang Engelmann
engelm...@uni-tuebingen.de wrote:
 Hello,

 I changed from  texlive2011 to  texlive2012

Did you run Tools  reconfigure ?

Scott

Re: No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Am Freitag, 30. November 2012, 17:15:23 schrieb Scott Kostyshak:
 On Fri, Nov 30, 2012 at 11:14 AM, Wolfgang Engelmann
 
 engelm...@uni-tuebingen.de wrote:
  Hello,
  
  I changed from  texlive2011 to  texlive2012
 
 Did you run Tools  reconfigure ?

yes, but same problem 

Wolfgang

Re: No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Am Freitag, 30. November 2012, 20:43:01 schrieb Wolfgang Engelmann:
 Am Freitag, 30. November 2012, 17:15:23 schrieb Scott Kostyshak:
  On Fri, Nov 30, 2012 at 11:14 AM, Wolfgang Engelmann
  
  engelm...@uni-tuebingen.de wrote:
   Hello,
   
   I changed from  texlive2011 to  texlive2012
  
  Did you run Tools  reconfigure ?
 
 yes, but same problem
 
 Wolfgang

I changed ~/.profile back to texlive2011,
as it was before and which used to work for the refs and cites in my 
documents. (texhash on user and as root, reconfigure done)

But still no cites and refs. Strange!

Any ideas?

Wolfgang

Re: No references in pdf output after change to texlive2012

[stefano franchi]

Whenever your ref disappear, the first suspicion is that biber/biber cannot
find the bib file. The second is  that bibtex/biber themselves have
disappeared (i.e. lyx cannot find them).
Have you checked their log (DocumentLaTeX Log, then Bibtex from the
drop down menu)?  What does it say?

Cheers,

Stefano


On Fri, Nov 30, 2012 at 2:30 PM, Wolfgang Engelmann 
engelm...@uni-tuebingen.de wrote:

 Am Freitag, 30. November 2012, 20:43:01 schrieb Wolfgang Engelmann:
  Am Freitag, 30. November 2012, 17:15:23 schrieb Scott Kostyshak:
   On Fri, Nov 30, 2012 at 11:14 AM, Wolfgang Engelmann
  
   engelm...@uni-tuebingen.de wrote:
Hello,
   
I changed from  texlive2011 to  texlive2012
  
   Did you run Tools  reconfigure ?
 
  yes, but same problem
 
  Wolfgang

 I changed ~/.profile back to texlive2011,
 as it was before and which used to work for the refs and cites in my
 documents. (texhash on user and as root, reconfigure done)

 But still no cites and refs. Strange!

 Any ideas?

 Wolfgang




-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas AM University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Hello,

I changed from  texlive2011 to  texlive2012 and get thereafter in my Koma 
book a ? instead of the citations and no references in the pdf output of 
the lyx file. The log file tells me

Package natbib Warning: Citation `Hennessey1991' on page 1 undefined on 
input line 124.

[1

{/mnt/sda/home/wolfgang/texlive/2012/texmf-
var/fonts/map/pdftex/updmap/pdftex.map}]
LaTeX Font Info:Font shape `T1/phv/bx/n' in size <12> not available
(Font)  Font shape `T1/phv/b/n' tried instead on input line 
135.

Package natbib Warning: Citation `Panda2004' on page 2 undefined on input 
line 
152.

Is the missing font the cause and where do I get it resp. which other font 
can I use? I am under debian-linux

Wolfgang

Re: No references in pdf output after change to texlive2012

[Scott Kostyshak]

On Fri, Nov 30, 2012 at 11:14 AM, Wolfgang Engelmann
 wrote:
> Hello,
>
> I changed from  texlive2011 to  texlive2012

Did you run Tools > reconfigure ?

Scott

Re: No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Am Freitag, 30. November 2012, 17:15:23 schrieb Scott Kostyshak:
> On Fri, Nov 30, 2012 at 11:14 AM, Wolfgang Engelmann
> 
>  wrote:
> > Hello,
> > 
> > I changed from  texlive2011 to  texlive2012
> 
> Did you run Tools > reconfigure ?

yes, but same problem 

Wolfgang

Re: No references in pdf output after change to texlive2012

[Wolfgang Engelmann]

Am Freitag, 30. November 2012, 20:43:01 schrieb Wolfgang Engelmann:
> Am Freitag, 30. November 2012, 17:15:23 schrieb Scott Kostyshak:
> > On Fri, Nov 30, 2012 at 11:14 AM, Wolfgang Engelmann
> > 
> >  wrote:
> > > Hello,
> > > 
> > > I changed from  texlive2011 to  texlive2012
> > 
> > Did you run Tools > reconfigure ?
> 
> yes, but same problem
> 
> Wolfgang

I changed ~/.profile back to texlive2011,
as it was before and which used to work for the refs and cites in my 
documents. (texhash on user and as root, reconfigure done)

But still no cites and refs. Strange!

Any ideas?

Wolfgang

Re: No references in pdf output after change to texlive2012

[stefano franchi]

Whenever your ref disappear, the first suspicion is that biber/biber cannot
find the bib file. The second is  that bibtex/biber themselves have
disappeared (i.e. lyx cannot find them).
Have you checked their log (Document>>LaTeX Log, then "Bibtex" from the
drop down menu)?  What does it say?

Cheers,

Stefano


On Fri, Nov 30, 2012 at 2:30 PM, Wolfgang Engelmann <
engelm...@uni-tuebingen.de> wrote:

> Am Freitag, 30. November 2012, 20:43:01 schrieb Wolfgang Engelmann:
> > Am Freitag, 30. November 2012, 17:15:23 schrieb Scott Kostyshak:
> > > On Fri, Nov 30, 2012 at 11:14 AM, Wolfgang Engelmann
> > >
> > >  wrote:
> > > > Hello,
> > > >
> > > > I changed from  texlive2011 to  texlive2012
> > >
> > > Did you run Tools > reconfigure ?
> >
> > yes, but same problem
> >
> > Wolfgang
>
> I changed ~/.profile back to texlive2011,
> as it was before and which used to work for the refs and cites in my
> documents. (texhash on user and as root, reconfigure done)
>
> But still no cites and refs. Strange!
>
> Any ideas?
>
> Wolfgang
>



-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas A University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

margin comments in a pdf output file

[ehud.kaplan]

It is often desirable to leave comments in the margins of a document.  
The various TODOnotes facilities work fine, but I have now found that 
they do NOT work in the abstract environment.  Is this a feature or a bug?


EK



--
Ehud Kaplan,

margin comments in a pdf output file

[ehud.kaplan]

It is often desirable to leave comments in the margins of a document.  
The various TODOnotes facilities work fine, but I have now found that 
they do NOT work in the abstract environment.  Is this a feature or a bug?


EK



--
Ehud Kaplan,

margin comments in a pdf output file

[ehud.kaplan]

It is often desirable to leave comments in the margins of a document.  
The various TODOnotes facilities work fine, but I have now found that 
they do NOT work in the abstract environment.  Is this a feature or a bug?


EK



--
Ehud Kaplan,

Re: Difficulty viewing pdf output

[Art Edwards]

On 03/25/2012 05:13 PM, Paul A. Rubin wrote:
 Art Edwards edwardsa at icantbelieveimdoingthis.com writes:

 Could not display /tmp/lyx_tmpdir.T25823/lyx_tmpbuf2/MRS_2012.pdf

 The location is not a folder.

 The pdf file exists and is viewable, just not using the view button in lyx.

 Just to be clear, you're saying that if you do View  PDF or View  PDF
 (pdflatex) in LyX, you find the aforenamed PDF file in the LyX buffer 
 directory,
 and you can open it manually in your preferred viewer, but LyX reports the
 quoted error message?  That being the case, if you look at Tools  
 Preferences 
 File Handling  File Formats and select the appropriate (say, PDF (pdflatex)),
 is the Viewer field set correctly?

 Paul


Yes to everything above the last question. That was the problem. The
Viewer field was set to xdg-open. I changed it to acroread and it works!

Many thanks.

Art Edwards

Re: Difficulty viewing pdf output

[Art Edwards]

On 03/25/2012 05:13 PM, Paul A. Rubin wrote:
 Art Edwards edwardsa at icantbelieveimdoingthis.com writes:

 Could not display /tmp/lyx_tmpdir.T25823/lyx_tmpbuf2/MRS_2012.pdf

 The location is not a folder.

 The pdf file exists and is viewable, just not using the view button in lyx.

 Just to be clear, you're saying that if you do View  PDF or View  PDF
 (pdflatex) in LyX, you find the aforenamed PDF file in the LyX buffer 
 directory,
 and you can open it manually in your preferred viewer, but LyX reports the
 quoted error message?  That being the case, if you look at Tools  
 Preferences 
 File Handling  File Formats and select the appropriate (say, PDF (pdflatex)),
 is the Viewer field set correctly?

 Paul


Yes to everything above the last question. That was the problem. The
Viewer field was set to xdg-open. I changed it to acroread and it works!

Many thanks.

Art Edwards

Re: Difficulty viewing pdf output

[Art Edwards]

On 03/25/2012 05:13 PM, Paul A. Rubin wrote:
> Art Edwards  icantbelieveimdoingthis.com> writes:
>
>> Could not display "/tmp/lyx_tmpdir.T25823/lyx_tmpbuf2/MRS_2012.pdf"
>>
>> The location is not a folder.
>>
>> The pdf file exists and is viewable, just not using the view button in lyx.
>>
> Just to be clear, you're saying that if you do View > PDF or View > PDF
> (pdflatex) in LyX, you find the aforenamed PDF file in the LyX buffer 
> directory,
> and you can open it manually in your preferred viewer, but LyX reports the
> quoted error message?  That being the case, if you look at Tools > 
> Preferences >
> File Handling > File Formats and select the appropriate (say, PDF (pdflatex)),
> is the Viewer field set correctly?
>
> Paul
>
>
Yes to everything above the last question. That was the problem. The
Viewer field was set to xdg-open. I changed it to acroread and it works!

Many thanks.

Art Edwards

Difficulty viewing pdf output

[Art Edwards]

I receive the following error message:

Could not display /tmp/lyx_tmpdir.T25823/lyx_tmpbuf2/MRS_2012.pdf

The location is not a folder.

The pdf file exists and is viewable, just not using the view button in lyx.

I tried using the -dgb debug switch from the command line, but this
introduced what appeared to be spurious errors.. no generation of pdf.

Any help would be appreciated.

Art Edwards

Re: Difficulty viewing pdf output

[Paul A . Rubin]

Art Edwards edwardsa at icantbelieveimdoingthis.com writes:

 
 Could not display /tmp/lyx_tmpdir.T25823/lyx_tmpbuf2/MRS_2012.pdf
 
 The location is not a folder.
 
 The pdf file exists and is viewable, just not using the view button in lyx.
 

Just to be clear, you're saying that if you do View  PDF or View  PDF
(pdflatex) in LyX, you find the aforenamed PDF file in the LyX buffer directory,
and you can open it manually in your preferred viewer, but LyX reports the
quoted error message?  That being the case, if you look at Tools  Preferences 
File Handling  File Formats and select the appropriate (say, PDF (pdflatex)),
is the Viewer field set correctly?

Paul

Difficulty viewing pdf output

[Art Edwards]

I receive the following error message:

Could not display /tmp/lyx_tmpdir.T25823/lyx_tmpbuf2/MRS_2012.pdf

The location is not a folder.

The pdf file exists and is viewable, just not using the view button in lyx.

I tried using the -dgb debug switch from the command line, but this
introduced what appeared to be spurious errors.. no generation of pdf.

Any help would be appreciated.

Art Edwards

Re: Difficulty viewing pdf output

[Paul A . Rubin]

Art Edwards edwardsa at icantbelieveimdoingthis.com writes:

 
 Could not display /tmp/lyx_tmpdir.T25823/lyx_tmpbuf2/MRS_2012.pdf
 
 The location is not a folder.
 
 The pdf file exists and is viewable, just not using the view button in lyx.
 

Just to be clear, you're saying that if you do View  PDF or View  PDF
(pdflatex) in LyX, you find the aforenamed PDF file in the LyX buffer directory,
and you can open it manually in your preferred viewer, but LyX reports the
quoted error message?  That being the case, if you look at Tools  Preferences 
File Handling  File Formats and select the appropriate (say, PDF (pdflatex)),
is the Viewer field set correctly?

Paul

Difficulty viewing pdf output

[Art Edwards]

I receive the following error message:

Could not display "/tmp/lyx_tmpdir.T25823/lyx_tmpbuf2/MRS_2012.pdf"

The location is not a folder.

The pdf file exists and is viewable, just not using the view button in lyx.

I tried using the -dgb debug switch from the command line, but this
introduced what appeared to be spurious errors.. no generation of pdf.

Any help would be appreciated.

Art Edwards

Re: Difficulty viewing pdf output

[Paul A . Rubin]

Art Edwards  icantbelieveimdoingthis.com> writes:

> 
> Could not display "/tmp/lyx_tmpdir.T25823/lyx_tmpbuf2/MRS_2012.pdf"
> 
> The location is not a folder.
> 
> The pdf file exists and is viewable, just not using the view button in lyx.
> 

Just to be clear, you're saying that if you do View > PDF or View > PDF
(pdflatex) in LyX, you find the aforenamed PDF file in the LyX buffer directory,
and you can open it manually in your preferred viewer, but LyX reports the
quoted error message?  That being the case, if you look at Tools > Preferences >
File Handling > File Formats and select the appropriate (say, PDF (pdflatex)),
is the Viewer field set correctly?

Paul