[Matplotlib-users] matplotlib._png failure on 64-bit OSX

2009-12-15 Thread Christopher Fonnesbeck
I have built matplotlib from svn on OSX 10.6, using the make.osx script that is included with the source, except with the 32-bit build flags removed. The resulting module fails on import, however, with the following: In [1]: from pylab import * ---

[Matplotlib-users] segfault when importing pylab

2009-12-15 Thread Jean-Paul Jadaud
Hi all, I have recently upgraded matplotlib to 0.99 on debian (Lenny) using the default options with synaptic. After this upgrade, importing pylab results in a seg. fault Using "python -v" yields the following messages. What should i do to improve this ? Thanks in advance. J-P J. =

Re: [Matplotlib-users] Memory issues with imshow

2009-12-15 Thread Christoph Gohlke
Hello, switching to 64-bit Python and OS might help. I can display 8bit images up to 8459x8459 with imshow on Windows 7 64-bit with 8GB RAM. Python then uses about 5.5 GB RAM according to task manager. A 8460x8460 or larger 8bit images crash Python (definitely a bug). The 32-bit interpreter st

Re: [Matplotlib-users] Plotting line with sharp peaks

2009-12-15 Thread Stefan Schietinger
Thank you. O.k. a little bit more: I just installed 0.99.1.1. Without path.simplify to False the problem is still there. So the "bug" might be still there. Thanks a lot again. Stefan P.S.: just in case someone wants to confirm an example: from scipy.special import sph_jn,sph_yn import n

Re: [Matplotlib-users] Memory issues with imshow

2009-12-15 Thread Perry Greenfield
On Dec 15, 2009, at 12:30 PM, Wellenreuther, Gerd wrote: > Hi Perry, > > to clarify what I am doing - maybe the error lies in here: > > * First I am building up a list of the corrected+rotated images > > * After that is done I am creating the figure > > * Then looping over every image, creating p

Re: [Matplotlib-users] Memory issues with imshow

2009-12-15 Thread Perry Greenfield
On Dec 15, 2009, at 1:09 PM, Gerd Wellenreuther wrote: > > > Perry Greenfield schrieb: >> if the above code is in a loop, and there is no figure clearing in >> the loop, then >> >> rotated_images[i] = [] >> gc.collect(2) >> >> will have no effect since matplotlib will still have references to

[Matplotlib-users] simple colorbar question

2009-12-15 Thread william ratcliff
I have two quick questions about colorbars in matplotlib. The first is related to the size of the colorbar. I would like to have square axes for a plot, so I use: ax=fig.add_subplot(1,2,1) pc=ax.pcolor(X,Z,P2) ax.set_aspect(1./ax.get_data_ratio()) cb=pylab.colorbar(pc,orientation='vertical') How

Re: [Matplotlib-users] Memory issues with imshow

2009-12-15 Thread Gerd Wellenreuther
Perry Greenfield schrieb: > if the above code is in a loop, and there is no figure clearing in the > loop, then > > rotated_images[i] = [] > gc.collect(2) > > will have no effect since matplotlib will still have references to the > array (and generally, you never need to call gc.collect by the

Re: [Matplotlib-users] exception error for matplotlib.use("WXAgg")

2009-12-15 Thread Michael Droettboom
jenya56 wrote: > I get this error: > "Matplotlib backend_wx and backened_wxagg require wxPython>=2.8" > I have Python 26 and the most current versions of Matplotlib, basemap, and > numpy. > Anybody? Thanks > PS On educational note: what do you really need backend for? thanks > Do you have wxpyt

Re: [Matplotlib-users] Memory issues with imshow

2009-12-15 Thread Wellenreuther, Gerd
Hi Perry, to clarify what I am doing - maybe the error lies in here: * First I am building up a list of the corrected+rotated images * After that is done I am creating the figure * Then looping over every image, creating proper axes for each individual image and finally: > pylab.imsho

[Matplotlib-users] exception error for matplotlib.use("WXAgg")

2009-12-15 Thread jenya56
I get this error: "Matplotlib backend_wx and backened_wxagg require wxPython>=2.8" I have Python 26 and the most current versions of Matplotlib, basemap, and numpy. Anybody? Thanks PS On educational note: what do you really need backend for? thanks -- View this message in context: http://old.na

Re: [Matplotlib-users] Plotting line with sharp peaks

2009-12-15 Thread Jouni K . Seppänen
stefan writes: > I want to plot a line with very sharp features and many data points. > [...] Is the '-' style doing some averaging before plotting or is it a > rendering problem? What version of matplotlib do you have? There have been some path simplification bugs fixed recently. Try setting pa

[Matplotlib-users] Memory issues with imshow

2009-12-15 Thread Wellenreuther, Gerd
Dear all, I am trying to write a script to be used with our microscope, stitching images of various magnifications together to yield a big picture of a sample. The preprocessing involves operations like rotating the picture etc., and finally those pictures are being plotted using imshow. Unfor

[Matplotlib-users] clabel( CS, manual=True ) / ginput_manual_clabel.py - broken?

2009-12-15 Thread Matthias Michler
Hello list, I run into trouble with the formelly working example ''ginput_manual_clabel.py'' or the following minimal example (in ipython -pylab) CS = plt.contour(reshape(arange(20)%3, (4, 5)), [0, 1, 2]) CL = plt.clabel( CS, manual=True ) First of all I get a DeprecationWarning during the sta

Re: [Matplotlib-users] Plotting line with sharp peaks

2009-12-15 Thread Michael Droettboom
Which version of matplotlib are you using? This is (I suspect) the result of a known bug in matplotlib that has been fixed since the latest release. In plots with large numbers of points, invisible points are automatically removed to increase performance and reduce file sizes, but this behavi

[Matplotlib-users] Line update: set_data vs recache issue

2009-12-15 Thread Antonino Ingargiola
Hi to all, I'm doing a simple animation like this: -- ion() x = arange(0,2,0.01) y = zeros_like(x) y[45:55]=1 l, = plot(x,y) D = 0.1 h = x[1]-x[0] dt = 0.0001; def nabla(v,h): na = zeros_like(v) na[1:-1] = (v[2:]-2*v[1:-1]+v[:-2]) na[0],na[-1] = 0,0 return na/(h**2) for i in ra

[Matplotlib-users] Plotting line with sharp peaks

2009-12-15 Thread stefan
Hi, I want to plot a line with very sharp features and many data points. If I plot the data with markers, the features can be seen perfectly. But if I choose the line style just to be '-' (which is also default), the peaks are not shown anymore. If I use something like '-o', the peaks are there