Re: [Matplotlib-users] Two panels (wxPython) containing separate figures
That did the trick. I tried going through the source code but it just got too messy. How do I let the networkx developers know about this? On Jul 11, 2012, at 1:18 PM, Benjamin Root wrote: On Wed, Jul 11, 2012 at 12:45 PM, Joshua Koehler jjkoehl...@gmail.com wrote: Hi all, I am currently trying to have two panels each with their own figure instance so they can have separate plots. I can successfully update a plot if there is only one panel. As soon as I add a second panel, I get the following error when I try to update (replot) a plot (Showing last message only): File /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/matplotlib/axes.py, line 1374, in _sci Argument must be an image, collection, or ContourSet in this Axes) ValueError: Argument must be an image, collection, or ContourSet in this Axes I looked online first and one site suggested it was because I was using matplotlib.Figure instead of pylab.Figure. I switched and the problem still occurs. I was curious to see if this problem had to do with how I set up my program, not with matplotlib, so I wrote a little test program. The exact same problem occurs. I have attached the test program. To see that it does work with just one panel comment out lines 39, 41, and 49. When put back in, I get the above error message. Any suggestions as to how to fix this? Thanks! Josh Josh, Can you please post the entire traceback? My suspicion for what is happening is that both figures are sharing the same canvas, but I am not exactly sure. Anyway, when you perform a plot on one panel, you are calling clear() for that figure, which may be having side-effects for the other figure since it is attached to the same Wx object. Actually, looking over your code again, I see a few things that may or may not be part of the problem, but should be addressed, nevertheless. First, you are calling FigureCanvas and assigning it to self.canvas. This canvas is different from the canvas that the figure will actually use, so I am not sure if this is being done correctly. Second, your call to plt.close() assumes that the figure you want to close is the currently active figure. What you want to call is plt.close(self.figure) in order to make sure it closes the figure you intend to close. Ben Root -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] Two panels (wxPython) containing separate figures
You can either send them the link to this discussion, or just the little snippet concerning gcf() above; just taking care of that would be an improvement. On Thu, Jul 12, 2012 at 10:17 AM, Joshua Koehler jjkoehl...@gmail.comwrote: That did the trick. I tried going through the source code but it just got too messy. How do I let the networkx developers know about this? On Jul 11, 2012, at 1:18 PM, Benjamin Root wrote: On Wed, Jul 11, 2012 at 12:45 PM, Joshua Koehler jjkoehl...@gmail.comwrote: Hi all, I am currently trying to have two panels each with their own figure instance so they can have separate plots. I can successfully update a plot if there is only one panel. As soon as I add a second panel, I get the following error when I try to update (replot) a plot (Showing last message only): File /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/matplotlib/axes.py, line 1374, in _sci Argument must be an image, collection, or ContourSet in this Axes) ValueError: Argument must be an image, collection, or ContourSet in this Axes I looked online first and one site suggested it was because I was using matplotlib.Figure instead of pylab.Figure. I switched and the problem still occurs. I was curious to see if this problem had to do with how I set up my program, not with matplotlib, so I wrote a little test program. The exact same problem occurs. I have attached the test program. To see that it does work with just one panel comment out lines 39, 41, and 49. When put back in, I get the above error message. Any suggestions as to how to fix this? Thanks! Josh Josh, Can you please post the entire traceback? My suspicion for what is happening is that both figures are sharing the same canvas, but I am not exactly sure. Anyway, when you perform a plot on one panel, you are calling clear() for that figure, which may be having side-effects for the other figure since it is attached to the same Wx object. Actually, looking over your code again, I see a few things that may or may not be part of the problem, but should be addressed, nevertheless. First, you are calling FigureCanvas and assigning it to self.canvas. This canvas is different from the canvas that the figure will actually use, so I am not sure if this is being done correctly. Second, your call to plt.close() assumes that the figure you want to close is the currently active figure. What you want to call is plt.close(self.figure) in order to make sure it closes the figure you intend to close. Ben Root -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users -- Daniel Hyams dhy...@gmail.com -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
[Matplotlib-users] Two panels (wxPython) containing separate figures
Hi all, I am currently trying to have two panels each with their own figure instance so they can have separate plots. I can successfully update a plot if there is only one panel. As soon as I add a second panel, I get the following error when I try to update (replot) a plot (Showing last message only): File /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/matplotlib/axes.py, line 1374, in _sci Argument must be an image, collection, or ContourSet in this Axes) ValueError: Argument must be an image, collection, or ContourSet in this Axes I looked online first and one site suggested it was because I was using matplotlib.Figure instead of pylab.Figure. I switched and the problem still occurs. I was curious to see if this problem had to do with how I set up my program, not with matplotlib, so I wrote a little test program. The exact same problem occurs. I have attached the test program. To see that it does work with just one panel comment out lines 39, 41, and 49. When put back in, I get the above error message. Any suggestions as to how to fix this? Thanks! Josh import wx import networkx as nx import matplotlib.pylab as plt from matplotlib.backends.backend_wxagg import FigureCanvasWxAgg as FigureCanvas def my_plot(figure): figure.clear() G = nx.star_graph(15) axes = figure.add_subplot(1,1,1) nx.draw_networkx(G, ax=axes) class PanelOne(wx.Panel): def __init__(self, my_parent, my_id=wx.ID_ANY): wx.Panel.__init__(self, parent=my_parent, id=my_id) self.figure = plt.figure() self.figure.add_subplot(1,1,1) self.canvas = FigureCanvas(self, wx.ID_ANY, self.figure) def update_display(self): my_plot(self.figure) def close(self): plt.close() class PanelTwo(wx.Panel): def __init__(self, my_parent, my_id=wx.ID_ANY): wx.Panel.__init__(self, parent=my_parent, id=my_id) self.figure = plt.figure() self.figure.add_subplot(1,1,1) self.canvas = FigureCanvas(self, wx.ID_ANY, self.figure) def update_display(self): my_plot(self.figure) def close(self): plt.close() class MyFrame(wx.Frame): def __init__(self, parent): wx.Frame.__init__(self,parent=parent) self.h_sizer = wx.BoxSizer(wx.HORIZONTAL) self.panel1 = PanelOne(self) self.panel2 = PanelTwo(self) self.h_sizer.Add(self.panel1) self.h_sizer.Add(self.panel2) self.panel1.update_display() self.SetSizer(self.h_sizer) self.Fit() self.Bind(wx.EVT_CLOSE, self.OnExit) def OnExit(self, event): self.panel1.close() self.panel2.close() self.Destroy() if __name__ == __main__: app = wx.App(False) frame = MyFrame(None) frame.Show(True) app.MainLoop() -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] Two panels (wxPython) containing separate figures
To get rid of the networkx dependency, I just replaced my_plot() with this: def my_plot(figure): figure.clear() axes = figure.add_subplot(1,1,1) axes.plot([0,1,2],[2,3,4]) and also added self.panel2.update_display() in the constructor for MyFrame, and everything worked fine. Could it be networkx caching a reference to a figure or axes that is really the problem? Can you post the full stack trace instead of just the last line? On Wed, Jul 11, 2012 at 12:45 PM, Joshua Koehler jjkoehl...@gmail.comwrote: Hi all, I am currently trying to have two panels each with their own figure instance so they can have separate plots. I can successfully update a plot if there is only one panel. As soon as I add a second panel, I get the following error when I try to update (replot) a plot (Showing last message only): File /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/matplotlib/axes.py, line 1374, in _sci Argument must be an image, collection, or ContourSet in this Axes) ValueError: Argument must be an image, collection, or ContourSet in this Axes I looked online first and one site suggested it was because I was using matplotlib.Figure instead of pylab.Figure. I switched and the problem still occurs. I was curious to see if this problem had to do with how I set up my program, not with matplotlib, so I wrote a little test program. The exact same problem occurs. I have attached the test program. To see that it does work with just one panel comment out lines 39, 41, and 49. When put back in, I get the above error message. Any suggestions as to how to fix this? Thanks! Josh -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users -- Daniel Hyams dhy...@gmail.com -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] Two panels (wxPython) containing separate figures
On Wed, Jul 11, 2012 at 12:45 PM, Joshua Koehler jjkoehl...@gmail.comwrote: Hi all, I am currently trying to have two panels each with their own figure instance so they can have separate plots. I can successfully update a plot if there is only one panel. As soon as I add a second panel, I get the following error when I try to update (replot) a plot (Showing last message only): File /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/matplotlib/axes.py, line 1374, in _sci Argument must be an image, collection, or ContourSet in this Axes) ValueError: Argument must be an image, collection, or ContourSet in this Axes I looked online first and one site suggested it was because I was using matplotlib.Figure instead of pylab.Figure. I switched and the problem still occurs. I was curious to see if this problem had to do with how I set up my program, not with matplotlib, so I wrote a little test program. The exact same problem occurs. I have attached the test program. To see that it does work with just one panel comment out lines 39, 41, and 49. When put back in, I get the above error message. Any suggestions as to how to fix this? Thanks! Josh Josh, Can you please post the entire traceback? My suspicion for what is happening is that both figures are sharing the same canvas, but I am not exactly sure. Anyway, when you perform a plot on one panel, you are calling clear() for that figure, which may be having side-effects for the other figure since it is attached to the same Wx object. Actually, looking over your code again, I see a few things that may or may not be part of the problem, but should be addressed, nevertheless. First, you are calling FigureCanvas and assigning it to self.canvas. This canvas is different from the canvas that the figure will actually use, so I am not sure if this is being done correctly. Second, your call to plt.close() assumes that the figure you want to close is the currently active figure. What you want to call is plt.close(self.figure) in order to make sure it closes the figure you intend to close. Ben Root -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] Two panels (wxPython) containing separate figures
Just from morbid curiosity, I installed networkx to see if I could see what is going on. And the answer to your original question is that no, matplotlib doesn't have problems with multiple wx panels; I do this all the time. Basically what is going on is that pylab is being used inside of networkx to issue the plotting commands. That's a bad idea in general, because of just this type of situation. Without getting in there and trying to fix networkx, I can at least make your script work by inserting this line: def my_plot(figure): figure.clear() plt.figure(figure.number) --- G = nx.star_graph(15) axes = figure.add_subplot(1,1,1) nx.draw_networkx(G, ax=axes) to make sure that before nx.draw_networkx is invoked, the correct figure is current. That's a kludge, but it does work. The proper solution is to modify networkx to use the api's properly. In particular, the glaring one is right at the top of site-packages/networkx/drawing/nx_pylab.py, line 119; that cf = pylab.gcf() should at least be if ax is None: cf = pylab.gcf() else: cf = ax.get_figure() [I think] The above should be reported to the networkx authors. On Wed, Jul 11, 2012 at 1:02 PM, Daniel Hyams dhy...@gmail.com wrote: To get rid of the networkx dependency, I just replaced my_plot() with this: def my_plot(figure): figure.clear() axes = figure.add_subplot(1,1,1) axes.plot([0,1,2],[2,3,4]) and also added self.panel2.update_display() in the constructor for MyFrame, and everything worked fine. Could it be networkx caching a reference to a figure or axes that is really the problem? Can you post the full stack trace instead of just the last line? On Wed, Jul 11, 2012 at 12:45 PM, Joshua Koehler jjkoehl...@gmail.comwrote: Hi all, I am currently trying to have two panels each with their own figure instance so they can have separate plots. I can successfully update a plot if there is only one panel. As soon as I add a second panel, I get the following error when I try to update (replot) a plot (Showing last message only): File /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/matplotlib/axes.py, line 1374, in _sci Argument must be an image, collection, or ContourSet in this Axes) ValueError: Argument must be an image, collection, or ContourSet in this Axes I looked online first and one site suggested it was because I was using matplotlib.Figure instead of pylab.Figure. I switched and the problem still occurs. I was curious to see if this problem had to do with how I set up my program, not with matplotlib, so I wrote a little test program. The exact same problem occurs. I have attached the test program. To see that it does work with just one panel comment out lines 39, 41, and 49. When put back in, I get the above error message. Any suggestions as to how to fix this? Thanks! Josh -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users -- Daniel Hyams dhy...@gmail.com -- Daniel Hyams dhy...@gmail.com -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] Two panels (wxPython) containing separate figures
Here is the full traceback from the sample program: Traceback (most recent call last): File panel_test.py, line 54, in module frame = MyFrame(None) File panel_test.py, line 42, in __init__ self.panel1.update_display() File panel_test.py, line 19, in update_display my_plot(self.figure) File panel_test.py, line 10, in my_plot nx.draw_networkx(G, ax=axes) File /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/networkx/drawing/nx_pylab.py, line 269, in draw_networkx node_collection=draw_networkx_nodes(G, pos, **kwds) File /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/networkx/drawing/nx_pylab.py, line 392, in draw_networkx_nodes pylab.sci(node_collection) File /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/matplotlib/pyplot.py, line 226, in sci gca()._sci(im) File /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/matplotlib/axes.py, line 1374, in _sci Argument must be an image, collection, or ContourSet in this Axes) ValueError: Argument must be an image, collection, or ContourSet in this Axes Thanks guys! Josh On Jul 11, 2012, at 1:18 PM, Benjamin Root wrote: On Wed, Jul 11, 2012 at 12:45 PM, Joshua Koehler jjkoehl...@gmail.com wrote: Hi all, I am currently trying to have two panels each with their own figure instance so they can have separate plots. I can successfully update a plot if there is only one panel. As soon as I add a second panel, I get the following error when I try to update (replot) a plot (Showing last message only): File /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/matplotlib/axes.py, line 1374, in _sci Argument must be an image, collection, or ContourSet in this Axes) ValueError: Argument must be an image, collection, or ContourSet in this Axes I looked online first and one site suggested it was because I was using matplotlib.Figure instead of pylab.Figure. I switched and the problem still occurs. I was curious to see if this problem had to do with how I set up my program, not with matplotlib, so I wrote a little test program. The exact same problem occurs. I have attached the test program. To see that it does work with just one panel comment out lines 39, 41, and 49. When put back in, I get the above error message. Any suggestions as to how to fix this? Thanks! Josh Josh, Can you please post the entire traceback? My suspicion for what is happening is that both figures are sharing the same canvas, but I am not exactly sure. Anyway, when you perform a plot on one panel, you are calling clear() for that figure, which may be having side-effects for the other figure since it is attached to the same Wx object. Actually, looking over your code again, I see a few things that may or may not be part of the problem, but should be addressed, nevertheless. First, you are calling FigureCanvas and assigning it to self.canvas. This canvas is different from the canvas that the figure will actually use, so I am not sure if this is being done correctly. Second, your call to plt.close() assumes that the figure you want to close is the currently active figure. What you want to call is plt.close(self.figure) in order to make sure it closes the figure you intend to close. Ben Root -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] Two panels (wxPython) containing separate figures
Josh: I'm assuming that you saw the workaround two messages up? On Wed, Jul 11, 2012 at 1:41 PM, Joshua Koehler jjkoehl...@gmail.comwrote: Here is the full traceback from the sample program: Traceback (most recent call last): File panel_test.py, line 54, in module frame = MyFrame(None) File panel_test.py, line 42, in __init__ self.panel1.update_display() File panel_test.py, line 19, in update_display my_plot(self.figure) File panel_test.py, line 10, in my_plot nx.draw_networkx(G, ax=axes) File /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/networkx/drawing/nx_pylab.py, line 269, in draw_networkx node_collection=draw_networkx_nodes(G, pos, **kwds) File /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/networkx/drawing/nx_pylab.py, line 392, in draw_networkx_nodes pylab.sci(node_collection) File /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/matplotlib/pyplot.py, line 226, in sci gca()._sci(im) File /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/matplotlib/axes.py, line 1374, in _sci Argument must be an image, collection, or ContourSet in this Axes) ValueError: Argument must be an image, collection, or ContourSet in this Axes Thanks guys! Josh On Jul 11, 2012, at 1:18 PM, Benjamin Root wrote: On Wed, Jul 11, 2012 at 12:45 PM, Joshua Koehler jjkoehl...@gmail.comwrote: Hi all, I am currently trying to have two panels each with their own figure instance so they can have separate plots. I can successfully update a plot if there is only one panel. As soon as I add a second panel, I get the following error when I try to update (replot) a plot (Showing last message only): File /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/matplotlib/axes.py, line 1374, in _sci Argument must be an image, collection, or ContourSet in this Axes) ValueError: Argument must be an image, collection, or ContourSet in this Axes I looked online first and one site suggested it was because I was using matplotlib.Figure instead of pylab.Figure. I switched and the problem still occurs. I was curious to see if this problem had to do with how I set up my program, not with matplotlib, so I wrote a little test program. The exact same problem occurs. I have attached the test program. To see that it does work with just one panel comment out lines 39, 41, and 49. When put back in, I get the above error message. Any suggestions as to how to fix this? Thanks! Josh Josh, Can you please post the entire traceback? My suspicion for what is happening is that both figures are sharing the same canvas, but I am not exactly sure. Anyway, when you perform a plot on one panel, you are calling clear() for that figure, which may be having side-effects for the other figure since it is attached to the same Wx object. Actually, looking over your code again, I see a few things that may or may not be part of the problem, but should be addressed, nevertheless. First, you are calling FigureCanvas and assigning it to self.canvas. This canvas is different from the canvas that the figure will actually use, so I am not sure if this is being done correctly. Second, your call to plt.close() assumes that the figure you want to close is the currently active figure. What you want to call is plt.close(self.figure) in order to make sure it closes the figure you intend to close. Ben Root -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users -- Daniel Hyams dhy...@gmail.com -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
