Re: [Matplotlib-users] X Window System error
On 2012/10/01 7:28 PM, Mic wrote: Hi, I have got the following error with the following code: /$ python mpl.py/ /Traceback (most recent call last):/ / File /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_gtk.py, line 398, in expose_event/ /self._render_figure(self._pixmap, w, h)/ / File /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_gtkagg.py, line 75, in _render_figure/ /FigureCanvasAgg.draw(self)/ / File /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_agg.py, line 416, in draw/ /self.renderer = self.get_renderer()/ / File /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_agg.py, line 435, in get_renderer/ /self.renderer = RendererAgg(w, h, self.figure.dpi)/ / File /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_agg.py, line 72, in __init__/ /self._renderer = _RendererAgg(int(width), int(height), dpi, debug=False)/ /ValueError: width and height must each be below 32768/ /The program 'mpl.py' received an X Window System error./ /This probably reflects a bug in the program./ /The error was 'BadAlloc (insufficient resources for operation)'./ / (Details: serial 486 error_code 11 request_code 53 minor_code 0)/ / (Note to programmers: normally, X errors are reported asynchronously;/ / that is, you will receive the error a while after causing it./ / To debug your program, run it with the --sync command line/ / option to change this behavior. You can then get a meaningful/ / backtrace from your debugger if you break on the gdk_x_error() function.)/ With the following code: /import random / /import matplotlib.pyplot as plt / // /coverages = [random.randint(1,10)*2] * 4605 / /contig_names = ['AAB0008r'] * len(coverages) / /# Set the figure size / /#fig = plt.figure(1, [20, 2]) / /fig = plt.figure(figsize=(int(len(coverages)*0.1), 4)) / // /ax = fig.add_subplot(111) / // /# Set the x-axis limit / /#ax.set_xlim(-1,100) / /ax.set_xlim(0,len(coverages)) / /#ax.set_ylim(0,3) / /ax.yaxis.grid(True, linestyle='-', which='major', color='grey', alpha=0.5) / // /ind = range(len(coverages)) / /rects = ax.bar(ind, coverages, width=0.1, align='center', color='thistle') / /ax.set_xticks(ind) / /#ax.set_xticklabels(contig_names)/ /#ax.tick_params(axis='both', which='major', labelsize=10)/ /#ax.tick_params(axis='both', which='minor', labelsize=8)/ / / / / /#function to auto-rotate the x axis labels/ /fig.autofmt_xdate()/ /plt.setp(ax.get_xticklabels(), fontsize=8, rotation='vertical')/ /plt.show()/ How is it possible to get big charts? It looks like you are trying to make a figure that is 460 inches by 4 inches. How do you expect to display or print it? I think displaying it is out of the question, so you would need to use a non-interactive backend. I don't know whether ps or pdf can handle those sorts of dimensions. Eric Thank you in advance. -- Don't let slow site performance ruin your business. Deploy New Relic APM Deploy New Relic app performance management and know exactly what is happening inside your Ruby, Python, PHP, Java, and .NET app Try New Relic at no cost today and get our sweet Data Nerd shirt too! http://p.sf.net/sfu/newrelic-dev2dev ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users -- Don't let slow site performance ruin your business. Deploy New Relic APM Deploy New Relic app performance management and know exactly what is happening inside your Ruby, Python, PHP, Java, and .NET app Try New Relic at no cost today and get our sweet Data Nerd shirt too! http://p.sf.net/sfu/newrelic-dev2dev ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] X Window System error
Hi Eric, I have a dataset which contains about 4600 values. Is it possible to display 4600 values with a bar char and labels? Thank you in advance. On Tue, Oct 2, 2012 at 4:04 PM, Eric Firing efir...@hawaii.edu wrote: On 2012/10/01 7:28 PM, Mic wrote: Hi, I have got the following error with the following code: /$ python mpl.py/ /Traceback (most recent call last):/ / File /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_gtk.py, line 398, in expose_event/ /self._render_figure(self._pixmap, w, h)/ / File /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_gtkagg.py, line 75, in _render_figure/ /FigureCanvasAgg.draw(self)/ / File /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_agg.py, line 416, in draw/ /self.renderer = self.get_renderer()/ / File /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_agg.py, line 435, in get_renderer/ /self.renderer = RendererAgg(w, h, self.figure.dpi)/ / File /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_agg.py, line 72, in __init__/ /self._renderer = _RendererAgg(int(width), int(height), dpi, debug=False)/ /ValueError: width and height must each be below 32768/ /The program 'mpl.py' received an X Window System error./ /This probably reflects a bug in the program./ /The error was 'BadAlloc (insufficient resources for operation)'./ / (Details: serial 486 error_code 11 request_code 53 minor_code 0)/ / (Note to programmers: normally, X errors are reported asynchronously;/ / that is, you will receive the error a while after causing it./ / To debug your program, run it with the --sync command line/ / option to change this behavior. You can then get a meaningful/ / backtrace from your debugger if you break on the gdk_x_error() function.)/ With the following code: /import random / /import matplotlib.pyplot as plt / // /coverages = [random.randint(1,10)*2] * 4605 / /contig_names = ['AAB0008r'] * len(coverages) / /# Set the figure size / /#fig = plt.figure(1, [20, 2]) / /fig = plt.figure(figsize=(int(len(coverages)*0.1), 4)) / // /ax = fig.add_subplot(111) / // /# Set the x-axis limit / /#ax.set_xlim(-1,100) / /ax.set_xlim(0,len(coverages)) / /#ax.set_ylim(0,3) / /ax.yaxis.grid(True, linestyle='-', which='major', color='grey', alpha=0.5) / // /ind = range(len(coverages)) / /rects = ax.bar(ind, coverages, width=0.1, align='center', color='thistle') / /ax.set_xticks(ind) / /#ax.set_xticklabels(contig_names)/ /#ax.tick_params(axis='both', which='major', labelsize=10)/ /#ax.tick_params(axis='both', which='minor', labelsize=8)/ / / / / /#function to auto-rotate the x axis labels/ /fig.autofmt_xdate()/ /plt.setp(ax.get_xticklabels(), fontsize=8, rotation='vertical')/ /plt.show()/ How is it possible to get big charts? It looks like you are trying to make a figure that is 460 inches by 4 inches. How do you expect to display or print it? I think displaying it is out of the question, so you would need to use a non-interactive backend. I don't know whether ps or pdf can handle those sorts of dimensions. Eric Thank you in advance. -- Don't let slow site performance ruin your business. Deploy New Relic APM Deploy New Relic app performance management and know exactly what is happening inside your Ruby, Python, PHP, Java, and .NET app Try New Relic at no cost today and get our sweet Data Nerd shirt too! http://p.sf.net/sfu/newrelic-dev2dev ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users -- Don't let slow site performance ruin your business. Deploy New Relic APM Deploy New Relic app performance management and know exactly what is happening inside your Ruby, Python, PHP, Java, and .NET app Try New Relic at no cost today and get our sweet Data Nerd shirt too! http://p.sf.net/sfu/newrelic-dev2dev ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users -- Don't let slow site performance ruin your business. Deploy New Relic APM Deploy New Relic app performance management and know exactly what is happening inside your Ruby, Python, PHP, Java, and .NET app Try New Relic at no cost today and get our sweet Data Nerd shirt too! http://p.sf.net/sfu/newrelic-dev2dev___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net
Re: [Matplotlib-users] X Window System error
On 2012/10/02 4:12 AM, Mic wrote: Hi Eric, I have a dataset which contains about 4600 values. Is it possible to display 4600 values with a bar char and labels? Thank you in advance. Mic, I don't think so, as a practical matter. A screen doesn't even have that many pixels of width. Eric On Tue, Oct 2, 2012 at 4:04 PM, Eric Firing efir...@hawaii.edu mailto:efir...@hawaii.edu wrote: On 2012/10/01 7:28 PM, Mic wrote: Hi, I have got the following error with the following code: /$ python mpl.py/ http://mpl.py/ /Traceback (most recent call last):/ / File /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_gtk.py, line 398, in expose_event/ /self._render_figure(self._pixmap, w, h)/ / File /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_gtkagg.py, line 75, in _render_figure/ /FigureCanvasAgg.draw(self)/ / File /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_agg.py, line 416, in draw/ /self.renderer = self.get_renderer()/ / File /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_agg.py, line 435, in get_renderer/ /self.renderer = RendererAgg(w, h, self.figure.dpi)/ / File /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_agg.py, line 72, in __init__/ /self._renderer = _RendererAgg(int(width), int(height), dpi, debug=False)/ /ValueError: width and height must each be below 32768/ /The program 'mpl.py' received an X Window System error./ /This probably reflects a bug in the program./ /The error was 'BadAlloc (insufficient resources for operation)'./ / (Details: serial 486 error_code 11 request_code 53 minor_code 0)/ / (Note to programmers: normally, X errors are reported asynchronously;/ / that is, you will receive the error a while after causing it./ / To debug your program, run it with the --sync command line/ / option to change this behavior. You can then get a meaningful/ / backtrace from your debugger if you break on the gdk_x_error() function.)/ With the following code: /import random / /import matplotlib.pyplot as plt / // /coverages = [random.randint(1,10)*2] * 4605 / /contig_names = ['AAB0008r'] * len(coverages) / /# Set the figure size / /#fig = plt.figure(1, [20, 2]) / /fig = plt.figure(figsize=(int(len(coverages)*0.1), 4)) / // /ax = fig.add_subplot(111) / // /# Set the x-axis limit / /#ax.set_xlim(-1,100) / /ax.set_xlim(0,len(coverages)) / /#ax.set_ylim(0,3) / /ax.yaxis.grid(True, linestyle='-', which='major', color='grey', alpha=0.5) / // /ind = range(len(coverages)) / /rects = ax.bar(ind, coverages, width=0.1, align='center', color='thistle') / /ax.set_xticks(ind) / /#ax.set_xticklabels(contig_names)/ /#ax.tick_params(axis='both', which='major', labelsize=10)/ /#ax.tick_params(axis='both', which='minor', labelsize=8)/ / / / / /#function to auto-rotate the x axis labels/ /fig.autofmt_xdate()/ /plt.setp(ax.get_xticklabels(), fontsize=8, rotation='vertical')/ /plt.show()/ How is it possible to get big charts? It looks like you are trying to make a figure that is 460 inches by 4 inches. How do you expect to display or print it? I think displaying it is out of the question, so you would need to use a non-interactive backend. I don't know whether ps or pdf can handle those sorts of dimensions. Eric Thank you in advance. -- Don't let slow site performance ruin your business. Deploy New Relic APM Deploy New Relic app performance management and know exactly what is happening inside your Ruby, Python, PHP, Java, and .NET app Try New Relic at no cost today and get our sweet Data Nerd shirt too! http://p.sf.net/sfu/newrelic-dev2dev ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net mailto:Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users -- Don't let slow site performance ruin your business. Deploy New Relic APM Deploy New Relic app performance management and know exactly what is happening inside your Ruby, Python, PHP, Java, and .NET app Try New Relic at no cost today and get
Re: [Matplotlib-users] X Window System error
On Tue, Oct 2, 2012 at 6:07 PM, Eric Firing efir...@hawaii.edu wrote: On 2012/10/02 4:12 AM, Mic wrote: Hi Eric, I have a dataset which contains about 4600 values. Is it possible to display 4600 values with a bar char and labels? Thank you in advance. Mic, I don't think so, as a practical matter. A screen doesn't even have that many pixels of width. Eric On Tue, Oct 2, 2012 at 4:04 PM, Eric Firing efir...@hawaii.edu mailto:efir...@hawaii.edu wrote: On 2012/10/01 7:28 PM, Mic wrote: Hi, I have got the following error with the following code: /$ python mpl.py/ http://mpl.py/ /Traceback (most recent call last):/ / File /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_gtk.py, line 398, in expose_event/ /self._render_figure(self._pixmap, w, h)/ / File /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_gtkagg.py, line 75, in _render_figure/ /FigureCanvasAgg.draw(self)/ / File /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_agg.py, line 416, in draw/ /self.renderer = self.get_renderer()/ / File /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_agg.py, line 435, in get_renderer/ /self.renderer = RendererAgg(w, h, self.figure.dpi)/ / File /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_agg.py, line 72, in __init__/ /self._renderer = _RendererAgg(int(width), int(height), dpi, debug=False)/ /ValueError: width and height must each be below 32768/ /The program 'mpl.py' received an X Window System error./ /This probably reflects a bug in the program./ /The error was 'BadAlloc (insufficient resources for operation)'./ / (Details: serial 486 error_code 11 request_code 53 minor_code 0)/ / (Note to programmers: normally, X errors are reported asynchronously;/ / that is, you will receive the error a while after causing it./ / To debug your program, run it with the --sync command line/ / option to change this behavior. You can then get a meaningful/ / backtrace from your debugger if you break on the gdk_x_error() function.)/ With the following code: /import random / /import matplotlib.pyplot as plt / // /coverages = [random.randint(1,10)*2] * 4605 / /contig_names = ['AAB0008r'] * len(coverages) / /# Set the figure size / /#fig = plt.figure(1, [20, 2]) / /fig = plt.figure(figsize=(int(len(coverages)*0.1), 4)) / // /ax = fig.add_subplot(111) / // /# Set the x-axis limit / /#ax.set_xlim(-1,100) / /ax.set_xlim(0,len(coverages)) / /#ax.set_ylim(0,3) / /ax.yaxis.grid(True, linestyle='-', which='major', color='grey', alpha=0.5) / // /ind = range(len(coverages)) / /rects = ax.bar(ind, coverages, width=0.1, align='center', color='thistle') / /ax.set_xticks(ind) / /#ax.set_xticklabels(contig_names)/ /#ax.tick_params(axis='both', which='major', labelsize=10)/ /#ax.tick_params(axis='both', which='minor', labelsize=8)/ / / / / /#function to auto-rotate the x axis labels/ /fig.autofmt_xdate()/ /plt.setp(ax.get_xticklabels(), fontsize=8, rotation='vertical')/ /plt.show()/ How is it possible to get big charts? It looks like you are trying to make a figure that is 460 inches by 4 inches. How do you expect to display or print it? I think displaying it is out of the question, so you would need to use a non-interactive backend. I don't know whether ps or pdf can handle those sorts of dimensions. Eric Thank you in advance. If you have that much data, a bar chart is probably not the way to go. Maybe try taking the height of what would be each bar and using that as a y-coordinate array then call plt.plot(y)? You'll get a line plot, and the x axis may not make a huge amount of sense, but at least you'll see all your data. Or, perhaps even a histogram? It's hard to advise without knowing your application, but that should help at least a little. Good luck! Best wishes, Damon -- Damon McDougall http://www.damon-is-a-geek.com B2.39 Mathematics Institute University of Warwick Coventry West Midlands CV4 7AL United Kingdom -- Don't let slow site performance ruin your business. Deploy New Relic APM Deploy New Relic app performance management and know exactly what is happening inside your Ruby, Python, PHP, Java, and .NET app Try New Relic at no cost today and get our sweet Data Nerd shirt too! http://p.sf.net/sfu/newrelic-dev2dev
