Re: [Matplotlib-users] problems installaling matplotlib on ubuntu 11.10
Perhaps you should post that question for the numpy mailing list? Thanks, I will try that. I have no clues Cheers, Lucia On Mon, Mar 5, 2012 at 1:47 PM, ava...@famaf.unc.edu.ar wrote: On Feb 23, 2012 1:39 PM, ava...@famaf.unc.edu.ar wrote: should I reinstall numpy? No need. You should be able to build matplotlib without sudo and then install with sudo python setup.py build sudo python setup.py install Yes! This is how it should be, but it's not. I have gone a litte further trying to solve this. I have found out the following: If I do an import numpy in python run as user, it works. In fact, 'python setup.py build' works perfectly as user. But if I do an import numpy in python run as root, I get the error I pasted in my previous message: :~/matplotlib$ sudo python Python 2.7.2+ (default, Oct 4 2011, 20:06:09) [GCC 4.6.1] on linux2 Type help, copyright, credits or license for more information. import numpy Traceback (most recent call last): File stdin, line 1, in module File /usr/local/lib/python2.7/dist-packages/numpy/__init__.py, line 137, in module import add_newdocs File /usr/local/lib/python2.7/dist-packages/numpy/add_newdocs.py, line 9, in module from numpy.lib import add_newdoc File /usr/local/lib/python2.7/dist-packages/numpy/lib/__init__.py, line 13, in module from polynomial import * File /usr/local/lib/python2.7/dist-packages/numpy/lib/polynomial.py, line 17, in module from numpy.linalg import eigvals, lstsq File /usr/local/lib/python2.7/dist-packages/numpy/linalg/__init__.py, line 48, in module from linalg import * File /usr/local/lib/python2.7/dist-packages/numpy/linalg/linalg.py, line 23, in module from numpy.linalg import lapack_lite ImportError: libifport.so.5: cannot open shared object file: No such file or directory After that I thought it must be something about this libifport.so that numpy uses, but... :~/matplotlib$ locate libifport /opt/intel/Compiler/11.1/038/lib/intel64/libifport.a /opt/intel/Compiler/11.1/038/lib/intel64/libifport.so /opt/intel/Compiler/11.1/038/lib/intel64/libifport.so.5 :~/matplotlib$ :~$ echo $LD_LIBRARY_PATH /opt/intel/Compiler/11.1/038/lib/intel64:/opt/intel/Compiler/11.1/038/mkl/lib/em64t :~$ sudo -s root@:~# echo $LD_LIBRARY_PATH /opt/intel/Compiler/11.1/038/lib/intel64:/opt/intel/Compiler/11.1/038/mkl/lib/em64t So I don't know why python fails to import numpy as root... and I don't know why mpl's installer needs to import numpy to install what has already been built. I haven't been able to solve this issue yet. Thank you all very much for all your help. Cheers, Lucia. Part of the build process imports numpy in order to check its version (I think). But the bigger question is why it fails as root. That is very odd. Perhaps you should post that question for the numpy mailing list? Cheers! Ben Root -- Virtualization Cloud Management Using Capacity Planning Cloud computing makes use of virtualization - but cloud computing also focuses on allowing computing to be delivered as a service. http://www.accelacomm.com/jaw/sfnl/114/51521223/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] problems installaling matplotlib on ubuntu 11.10
On Feb 23, 2012 1:39 PM, ava...@famaf.unc.edu.ar wrote: should I reinstall numpy? No need. You should be able to build matplotlib without sudo and then install with sudo python setup.py build sudo python setup.py install Yes! This is how it should be, but it's not. I have gone a litte further trying to solve this. I have found out the following: If I do an import numpy in python run as user, it works. In fact, 'python setup.py build' works perfectly as user. But if I do an import numpy in python run as root, I get the error I pasted in my previous message: :~/matplotlib$ sudo python Python 2.7.2+ (default, Oct 4 2011, 20:06:09) [GCC 4.6.1] on linux2 Type help, copyright, credits or license for more information. import numpy Traceback (most recent call last): File stdin, line 1, in module File /usr/local/lib/python2.7/dist-packages/numpy/__init__.py, line 137, in module import add_newdocs File /usr/local/lib/python2.7/dist-packages/numpy/add_newdocs.py, line 9, in module from numpy.lib import add_newdoc File /usr/local/lib/python2.7/dist-packages/numpy/lib/__init__.py, line 13, in module from polynomial import * File /usr/local/lib/python2.7/dist-packages/numpy/lib/polynomial.py, line 17, in module from numpy.linalg import eigvals, lstsq File /usr/local/lib/python2.7/dist-packages/numpy/linalg/__init__.py, line 48, in module from linalg import * File /usr/local/lib/python2.7/dist-packages/numpy/linalg/linalg.py, line 23, in module from numpy.linalg import lapack_lite ImportError: libifport.so.5: cannot open shared object file: No such file or directory After that I thought it must be something about this libifport.so that numpy uses, but... :~/matplotlib$ locate libifport /opt/intel/Compiler/11.1/038/lib/intel64/libifport.a /opt/intel/Compiler/11.1/038/lib/intel64/libifport.so /opt/intel/Compiler/11.1/038/lib/intel64/libifport.so.5 :~/matplotlib$ :~$ echo $LD_LIBRARY_PATH /opt/intel/Compiler/11.1/038/lib/intel64:/opt/intel/Compiler/11.1/038/mkl/lib/em64t :~$ sudo -s root@:~# echo $LD_LIBRARY_PATH /opt/intel/Compiler/11.1/038/lib/intel64:/opt/intel/Compiler/11.1/038/mkl/lib/em64t So I don't know why python fails to import numpy as root... and I don't know why mpl's installer needs to import numpy to install what has already been built. I haven't been able to solve this issue yet. Thank you all very much for all your help. Cheers, Lucia. -- Try before you buy = See our experts in action! The most comprehensive online learning library for Microsoft developers is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, Metro Style Apps, more. Free future releases when you subscribe now! http://p.sf.net/sfu/learndevnow-dev2 ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] problems installaling matplotlib on ubuntu 11.10
On Mon, Mar 5, 2012 at 1:47 PM, ava...@famaf.unc.edu.ar wrote: On Feb 23, 2012 1:39 PM, ava...@famaf.unc.edu.ar wrote: should I reinstall numpy? No need. You should be able to build matplotlib without sudo and then install with sudo python setup.py build sudo python setup.py install Yes! This is how it should be, but it's not. I have gone a litte further trying to solve this. I have found out the following: If I do an import numpy in python run as user, it works. In fact, 'python setup.py build' works perfectly as user. But if I do an import numpy in python run as root, I get the error I pasted in my previous message: :~/matplotlib$ sudo python Python 2.7.2+ (default, Oct 4 2011, 20:06:09) [GCC 4.6.1] on linux2 Type help, copyright, credits or license for more information. import numpy Traceback (most recent call last): File stdin, line 1, in module File /usr/local/lib/python2.7/dist-packages/numpy/__init__.py, line 137, in module import add_newdocs File /usr/local/lib/python2.7/dist-packages/numpy/add_newdocs.py, line 9, in module from numpy.lib import add_newdoc File /usr/local/lib/python2.7/dist-packages/numpy/lib/__init__.py, line 13, in module from polynomial import * File /usr/local/lib/python2.7/dist-packages/numpy/lib/polynomial.py, line 17, in module from numpy.linalg import eigvals, lstsq File /usr/local/lib/python2.7/dist-packages/numpy/linalg/__init__.py, line 48, in module from linalg import * File /usr/local/lib/python2.7/dist-packages/numpy/linalg/linalg.py, line 23, in module from numpy.linalg import lapack_lite ImportError: libifport.so.5: cannot open shared object file: No such file or directory After that I thought it must be something about this libifport.so that numpy uses, but... :~/matplotlib$ locate libifport /opt/intel/Compiler/11.1/038/lib/intel64/libifport.a /opt/intel/Compiler/11.1/038/lib/intel64/libifport.so /opt/intel/Compiler/11.1/038/lib/intel64/libifport.so.5 :~/matplotlib$ :~$ echo $LD_LIBRARY_PATH /opt/intel/Compiler/11.1/038/lib/intel64:/opt/intel/Compiler/11.1/038/mkl/lib/em64t :~$ sudo -s root@:~# echo $LD_LIBRARY_PATH /opt/intel/Compiler/11.1/038/lib/intel64:/opt/intel/Compiler/11.1/038/mkl/lib/em64t So I don't know why python fails to import numpy as root... and I don't know why mpl's installer needs to import numpy to install what has already been built. I haven't been able to solve this issue yet. Thank you all very much for all your help. Cheers, Lucia. Part of the build process imports numpy in order to check its version (I think). But the bigger question is why it fails as root. That is very odd. Perhaps you should post that question for the numpy mailing list? Cheers! Ben Root -- Try before you buy = See our experts in action! The most comprehensive online learning library for Microsoft developers is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, Metro Style Apps, more. Free future releases when you subscribe now! http://p.sf.net/sfu/learndevnow-dev2___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] problems installaling matplotlib on ubuntu 11.10
Thank you all for your help Using sudo generates an error, without it everything run ok. :~$ sudo python -c import numpy; print numpy.__version__ Traceback (most recent call last): File string, line 1, in module File /usr/local/lib/python2.7/dist-packages/numpy/__init__.py, line 137, in module import add_newdocs File /usr/local/lib/python2.7/dist-packages/numpy/add_newdocs.py, line 9, in module from numpy.lib import add_newdoc File /usr/local/lib/python2.7/dist-packages/numpy/lib/__init__.py, line 13, in module from polynomial import * File /usr/local/lib/python2.7/dist-packages/numpy/lib/polynomial.py, line 17, in module from numpy.linalg import eigvals, lstsq File /usr/local/lib/python2.7/dist-packages/numpy/linalg/__init__.py, line 48, in module from linalg import * File /usr/local/lib/python2.7/dist-packages/numpy/linalg/linalg.py, line 23, in module from numpy.linalg import lapack_lite ImportError: libifport.so.5: cannot open shared object file: No such file or directory And the other command suggested by Eric, I think matplotlib is not displayed due to it is not intalled yet, isn't it? ~$ sudo python -c import sys; print '\n'.join(sys.path) /usr/local/lib/python2.7/dist-packages/setuptools-0.6c11-py2.7.egg /usr/local/lib/python2.7/dist-packages/nose-0.11.0.dev_r636-py2.7.egg /usr/local/lib/python2.7/dist-packages/FiPy-2.1.2-py2.7.egg /usr/local/lib/python2.7/dist-packages/pysparse-1.2_dev224-py2.7-linux-x86_64.egg /usr/local/lib/python2.7/dist-packages /usr/lib/python2.7 /usr/lib/python2.7/plat-linux2 /usr/lib/python2.7/lib-tk /usr/lib/python2.7/lib-old /usr/lib/python2.7/lib-dynload /usr/local/lib/python2.7/dist-packages /usr/lib/python2.7/dist-packages /usr/lib/python2.7/dist-packages/PIL /usr/lib/python2.7/dist-packages/gst-0.10 /usr/lib/python2.7/dist-packages/gtk-2.0 /usr/lib/pymodules/python2.7 /usr/lib/pymodules/python2.7/libubuntuone /usr/lib/python2.7/dist-packages/ubuntu-sso-client /usr/lib/python2.7/dist-packages/ubuntuone-client /usr/lib/python2.7/dist-packages/ubuntuone-control-panel /usr/lib/python2.7/dist-packages/ubuntuone-installer /usr/lib/python2.7/dist-packages/ubuntuone-storage-protocol /usr/lib/python2.7/dist-packages/wx-2.8-gtk2-unicode should I reinstall numpy? Thanks, Lucia On 02/22/2012 04:06 PM, ava...@famaf.unc.edu.ar wrote: Dear users, I am trying to install matplotlib from source. When I run: sudo python setup.py install build.out I got the following: basedirlist is: ['/usr/local', '/usr'] BUILDING MATPLOTLIB matplotlib: 1.2.x python: 2.7.2+ (default, Oct 4 2011, 20:06:09) [GCC 4.6.1] platform: linux2 REQUIRED DEPENDENCIES numpy: no * You must install numpy 1.4 or later to build * matplotlib. But numpy is installed(/usr/local/lib/python2.7/dist-packages/numpy) python -c import numpy; print numpy.__version__ 1.6.1 How matplotlib could locate numpy path? mpl is trying to use exactly this method: import numpy. See the check_for_numpy function() in setupext.py. All I can imagine is that either because of sudo, or because of the terminal you were in when you tried to build, your sys.path was not including the /usr/local path. Try: sudo python -c import numpy; print numpy.__version__ sudo python -c import sys; print '\n'.join(sys.path) The latter must include /usr/local/lib/python2.7/dist-packages. Eric How this problem could be solved? Thanks a lot in advance. Lucia -- Virtualization Cloud Management Using Capacity Planning Cloud computing makes use of virtualization - but cloud computing also focuses on allowing computing to be delivered as a service. http://www.accelacomm.com/jaw/sfnl/114/51521223/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users -- Virtualization Cloud Management Using Capacity Planning Cloud computing makes use of virtualization - but cloud computing also focuses on allowing computing to be delivered as a service. http://www.accelacomm.com/jaw/sfnl/114/51521223/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users -- Virtualization Cloud Management Using Capacity Planning Cloud computing makes use of virtualization - but cloud computing also focuses on allowing computing to be delivered as a service. http://www.accelacomm.com/jaw/sfnl/114/51521223/
Re: [Matplotlib-users] problems installaling matplotlib on ubuntu 11.10
On Feb 23, 2012 1:39 PM, ava...@famaf.unc.edu.ar wrote: should I reinstall numpy? No need. You should be able to build matplotlib without sudo and then install with sudo python setup.py build sudo python setup.py install Cheers, Scott -- Virtualization Cloud Management Using Capacity Planning Cloud computing makes use of virtualization - but cloud computing also focuses on allowing computing to be delivered as a service. http://www.accelacomm.com/jaw/sfnl/114/51521223/___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
[Matplotlib-users] problems installaling matplotlib on ubuntu 11.10
Dear users, I am trying to install matplotlib from source. When I run: sudo python setup.py install build.out I got the following: basedirlist is: ['/usr/local', '/usr'] BUILDING MATPLOTLIB matplotlib: 1.2.x python: 2.7.2+ (default, Oct 4 2011, 20:06:09) [GCC 4.6.1] platform: linux2 REQUIRED DEPENDENCIES numpy: no * You must install numpy 1.4 or later to build * matplotlib. But numpy is installed(/usr/local/lib/python2.7/dist-packages/numpy) python -c import numpy; print numpy.__version__ 1.6.1 How matplotlib could locate numpy path? How this problem could be solved? Thanks a lot in advance. Lucia -- Virtualization Cloud Management Using Capacity Planning Cloud computing makes use of virtualization - but cloud computing also focuses on allowing computing to be delivered as a service. http://www.accelacomm.com/jaw/sfnl/114/51521223/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] problems installaling matplotlib on ubuntu 11.10
On Wednesday, February 22, 2012, wrote: Dear users, I am trying to install matplotlib from source. When I run: sudo python setup.py install build.out I got the following: basedirlist is: ['/usr/local', '/usr'] BUILDING MATPLOTLIB matplotlib: 1.2.x python: 2.7.2+ (default, Oct 4 2011, 20:06:09) [GCC 4.6.1] platform: linux2 REQUIRED DEPENDENCIES numpy: no * You must install numpy 1.4 or later to build * matplotlib. But numpy is installed(/usr/local/lib/python2.7/dist-packages/numpy) python -c import numpy; print numpy.__version__ 1.6.1 How matplotlib could locate numpy path? How this problem could be solved? Thanks a lot in advance. Lucia Lucia, there might be a bug with the version checker. Are you using matplotlib from Git master? If so, what is the date of the latest commit? Ben Root -- Virtualization Cloud Management Using Capacity Planning Cloud computing makes use of virtualization - but cloud computing also focuses on allowing computing to be delivered as a service. http://www.accelacomm.com/jaw/sfnl/114/51521223/___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] problems installaling matplotlib on ubuntu 11.10
On 02/22/2012 04:06 PM, ava...@famaf.unc.edu.ar wrote: Dear users, I am trying to install matplotlib from source. When I run: sudo python setup.py install build.out I got the following: basedirlist is: ['/usr/local', '/usr'] BUILDING MATPLOTLIB matplotlib: 1.2.x python: 2.7.2+ (default, Oct 4 2011, 20:06:09) [GCC 4.6.1] platform: linux2 REQUIRED DEPENDENCIES numpy: no * You must install numpy 1.4 or later to build * matplotlib. But numpy is installed(/usr/local/lib/python2.7/dist-packages/numpy) python -c import numpy; print numpy.__version__ 1.6.1 How matplotlib could locate numpy path? mpl is trying to use exactly this method: import numpy. See the check_for_numpy function() in setupext.py. All I can imagine is that either because of sudo, or because of the terminal you were in when you tried to build, your sys.path was not including the /usr/local path. Try: sudo python -c import numpy; print numpy.__version__ sudo python -c import sys; print '\n'.join(sys.path) The latter must include /usr/local/lib/python2.7/dist-packages. Eric How this problem could be solved? Thanks a lot in advance. Lucia -- Virtualization Cloud Management Using Capacity Planning Cloud computing makes use of virtualization - but cloud computing also focuses on allowing computing to be delivered as a service. http://www.accelacomm.com/jaw/sfnl/114/51521223/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users -- Virtualization Cloud Management Using Capacity Planning Cloud computing makes use of virtualization - but cloud computing also focuses on allowing computing to be delivered as a service. http://www.accelacomm.com/jaw/sfnl/114/51521223/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
