Re: [Mauve-users] ArrayIndexOutOfBoundsException

2014-05-07 Thread Aaron Darling
Hi Fatma, This looks like an off-by-one bug somewhere in the aligner or GUI. It would be easiest for me to track down and fix if you could provide the alignment and input sequence files you are using. Obviously they are far too big for email attachments so perhaps you could use a cloud storage serv

[Mauve-users] ArrayIndexOutOfBoundsException

2014-05-05 Thread Fatma Onmus
Hello All, We are now using snapshot-2012-06-07 for SNP export per Aaron's suggestion. We run this on Linux. We successfully exported the SNP file before so we decided to accelarate a bit and ran 60 genomes.The backbone file(.xmfa) was created with no problem. However SNP export failed due to A