Re: [Mauve-users] Extract coordinates from LCB blocs without xmfa file

2016-10-17 Thread Aaron Darling
Hi Karla, The "1. no extension" file you mention is the XMFA file. Now, onto your question about LCB boundaries, the quantities you are asking for actually ill-defined. The issue is that when unequal gene content is present in a genome alignment, and there are three or more genomes involved, it is

[Mauve-users] Extract coordinates from LCB blocs without xmfa file

2016-10-07 Thread Karla Pollyanna
Dear all, I'm struggling in a Mauve analysis and wonder if someone could help me. I'm studying 13 genomes from diff bacteria and I performed a progressiveMauve alignment from the graphical interface using the last version of Mauve snapshot for Linux (2015-02-13). I have as output the follow file