Re: [Mauve-users] Extract core alignment in fasta format from Mauve output

Hello Lu and everyone, This is an old thread, but it would help me a lot if we could core extract an alignment in fasta format from the stripSubsets core_alignment.xmfa file. Using 6 aligned genomes, and following Lu's instructions exactly, I am getting 6 error messages: MAUVE>perl xmfa2fas

[Mauve-users] Extract core alignment in fasta format from Mauve output

Dear All, I would like to share a script which extracts core alignment in fasta format from Mauve output. Let us use the example in the following link https://code.google.com/p/clonalorigin/wiki/FromGenomeAssemblyToRecombination Our goal is to extract the core alignment for the input 4 genome