Thanks Raymond, but It tried this and that failed too...
-Original Message-
From: Raymond Wan [mailto:r...@cuhk.edu.hk]
Sent: August-22-14 10:30 AM
To: Ybazeta, Gustavo , Dr.
Cc: mauve-users@lists.sourceforge.net
Subject: Re: [Mauve-users] SNPs from a core.xfma genome
Dear Gustavo
Dear Gustavo,
Quoting "Ybazeta, Gustavo , Dr." :
...
> Perhaps I am missing something? may be another way to extract the SNPs from
> the core.xfma file?
I'm not sure if you this will solve your problem, but you could try loading the
xmfa file using the GUI and then exporting the SNPs from it
Hello,
I used the stripSubsetLCBs program to extract the core genome of 27 bacteria
genomes. I used these paramethers:
>./stripSubsetLCBs clost_inpatients.xfma clost_inpatients.xfma.bbcols core.xfma
>500
and the run was successful...
"Read 28320 backbone entries
seq_count is: 27
output_ivs.size
