I can imagine there would be consistency between guide tree groups and
serotype in some or even most cases but, if you want to group by
serotype I am not sure the guide tree is a good proxy. But I know little
about serotypes and how they work in various organisms.
On Tue, 2016-01-19 at 10:02 -050
Aaron,
Could the guide tree be used to group samples within a serotype or would
that too be a misinterpretation?
-Amarin
On Tue, Dec 8, 2015 at 4:41 PM, Aaron Darling
wrote:
> Hi Susan,
>
> On Tue, 2015-12-08 at 20:05 +, Susan Beth Fogelson wrote:
>
> Thank you for all of your helpful resp
Hi Susan,
On Tue, 2015-12-08 at 20:05 +, Susan Beth Fogelson wrote:
> Thank you for all of your helpful responses. I guess at this point my
> question changes. I would like to build a phylogenetic tree of this
> alignment and I assume I need to convert the XMFA file to another
> format to co
@lists.sourceforge.net
Subject: Re: [Mauve-users] Guide tree question
The vagueness in that file is at least partially intentional -- the tree
doesn't have a well-established interpretation outside of being a reflection of
the order in which genomes were aligned. I think it would be dangerous to
inte
The vagueness in that file is at least partially intentional -- the tree
doesn't have a well-established interpretation outside of being a
reflection of the order in which genomes were aligned. I think it would
be dangerous to interpret it as a phylogeny, especially as one intended
to represent ver
As far as I know there is no way to have the file/sample names appended to
the guide tree. The sequence order is the order in which the files were
added in the alignment setup. I've been manually changing the seq names in
the guide tree file. If there is another way of doing it I'd love to hear
