rted mer list Create time was:
2 seconds. Creating sorted mer list ERROR! gap character encountered at
genome sequence position 61 Input sequences must be unaligned and ungapped!
Kindly help me out. Responses are highly appreciated!!!
Regards
Hiren ghosh
--
*Hiren Ghosh, Docto
command line after running mauve how i will automatically go to that folder
and pass the result to another folder in different location.
Regards
Hiren
On 16 July 2013 08:52, Aaron Darling wrote:
>
> Hello Hiren, (reply below)
>
> On Tue, 2013-07-09 at 16:59 +0200, Hiren Ghosh wro
Hello all i was trying to run mauve as a batch mode in such a way
for draft in *.fasta
do
echo $draft
#$ref= Ecoli_jj1886_complete_geneone.fasta;
$bname=echo $draft
java -Xmx500m -cp Mauve.jar org.gel.mauve.contigs.ContigOrderer -output
$bname -ref ref.fasta -draft $draft
Hello all,
I was having a try to convert mauve XFMA file to phylip format for further
run on RaxML to draw a MLH tree. I
used bioperl to convert the file in such way
use Bio::AlignIO;
$in = Bio::AlignIO->new(-file => "test.xmfa" ,
-format => 'xmfa');
$out = Bio::AlignIO-
