Re: ***SPAM*** [MORPHMET] Extract Classifier from ID string

[Nelly Ndungu]

Thanks Carmelo,
This trick has worked, thanks alot.
Kind Regards,
Nelly Ndungu

On Thu, Mar 22, 2018 at 4:50 PM, Carmelo Fruciano 
wrote:

> Dear Bekkym
>
> I'm assuming you actually have a problem with the specimen names in the
> file you imported in MorphoJ.
>
> It's hard to know what exactly the problem is with the information you
> provide, but I will point out that a trick which may or may not apply to
> your specific case is to convert the TPS file into an NTS file using
> tpsUtil, specifying the option to use the image name as names of your
> observations (i.e., specimens). At that point, you import the NTS instead
> of the TPS.
>
> I hope this helps,
>
> Carmelo
>
>
> On 22/03/2018 14:42, Nelly wrote:
>
> Dear All,
>
> Kindly assist.
> I am trying to generate CVA but this is not possible because initially i
> didn't ectract classifiers.
> This is because my data appeared as numbers from1-70 in morphoj instead of
> sample ids that were in the .jpg file.
> As shown below i.e 0,1,2,3.79.
> Therefore i could not classify.
> How can this be corrected so that i have the full names instead of numbers
> in the classifier column.
>
>
> Kindly assist.
> Nelly Ndungu
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[MORPHMET] Re: Extract Classifier from ID string

[dsbriss_dmd]

Hi Nelly, in your CSV file you need to use record identifiers that will 
allow you to break apart the samples the way you want.  I recently did a 
project where I used the following:

rme0031
rme0201
rme0032
rme0202
etc, there were about 50 of these subjects/timepoints.  

The subject is identified as 003, 020, etc and the timepoint we added as 
the final digit, 1 or 2.

When using the Extract Classifier from ID string you'd specify the 
characters (from the left, subject starts as character 4-6) and timepoint 
would start and end at character 7.  

I hope that helps.
David

On Thursday, March 22, 2018 at 9:42:21 AM UTC-4, Nelly wrote:
>
> Dear All,
>
> Kindly assist.
> I am trying to generate CVA but this is not possible because initially i 
> didn't ectract classifiers.
> This is because my data appeared as numbers from1-70 in morphoj instead of 
> sample ids that were in the .jpg file.
> As shown below i.e 0,1,2,3.79.
> Therefore i could not classify.
> How can this be corrected so that i have the full names instead of numbers 
> in the classifier column.
>
>
> Kindly assist.
> Nelly Ndungu
>

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Re: ***SPAM*** [MORPHMET] Extract Classifier from ID string

[Carmelo Fruciano]

Dear Bekkym

I'm assuming you actually have a problem with the specimen names in the 
file you imported in MorphoJ.


It's hard to know what exactly the problem is with the information you 
provide, but I will point out that a trick which may or may not apply to 
your specific case is to convert the TPS file into an NTS file using 
tpsUtil, specifying the option to use the image name as names of your 
observations (i.e., specimens). At that point, you import the NTS 
instead of the TPS.


I hope this helps,

Carmelo



On 22/03/2018 14:42, Nelly wrote:

Dear All,

Kindly assist.
I am trying to generate CVA but this is not possible because initially 
i didn't ectract classifiers.
This is because my data appeared as numbers from1-70 in morphoj 
instead of sample ids that were in the .jpg file.

As shown below i.e 0,1,2,3.79.
Therefore i could not classify.
How can this be corrected so that i have the full names instead of 
numbers in the classifier column.



Kindly assist.
Nelly Ndungu
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Re: ***SPAM*** [MORPHMET] Extract Classifier from ID string

[Carmelo Fruciano]

Hi Nelly,

you're welcome, and sorry for calling you with some other name.

Best,

Carmelo


On 22/03/2018 15:06, Nelly Ndungu wrote:

Thanks Carmelo,
This trick has worked, thanks alot.
Kind Regards,
Nelly Ndungu

On Thu, Mar 22, 2018 at 4:50 PM, Carmelo Fruciano > wrote:


Dear Bekkym

I'm assuming you actually have a problem with the specimen names
in the file you imported in MorphoJ.

It's hard to know what exactly the problem is with the information
you provide, but I will point out that a trick which may or may
not apply to your specific case is to convert the TPS file into an
NTS file using tpsUtil, specifying the option to use the image
name as names of your observations (i.e., specimens). At that
point, you import the NTS instead of the TPS.

I hope this helps,

Carmelo



On 22/03/2018 14:42, Nelly wrote:

Dear All,

Kindly assist.
I am trying to generate CVA but this is not possible because
initially i didn't ectract classifiers.
This is because my data appeared as numbers from1-70 in morphoj
instead of sample ids that were in the .jpg file.
As shown below i.e 0,1,2,3.79.
Therefore i could not classify.
How can this be corrected so that i have the full names instead
of numbers in the classifier column.


Kindly assist.
Nelly Ndungu
-- 
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http://www.morphometrics.org
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Re: [MORPHMET] Extract Classifier from ID string

[Chris Klingenberg]

Dear Nelly

I presume you imported the data from a TPS file.

From the MorphoJ documentation:
"It is often the case that the entry for the IMAGE= keyword in TPS files 
contains more useful information for making the identifier than that of 
the ID= keyword. To use the IMAGE= keyword, it is therefore helpful to 
disable the ID= keyword. This can be done easily with a text editor by 
changing every occurrence of "ID=" into something else, for instance 
"@ID=" (in this way, the change is reversible if you want to use the 
same TPS file for something else...). If this is done, MorphoJ will use 
the IMAGE= keyword instead."
http://flywings.org.uk/MorphoJ_guide/frameset.htm?fundamentals/fileTypes.htm 



Suggestion: make the changes above on a *copy* of your TPS file, because 
the TPS software may not be able to read it any more.


I hope this helps.

Best wishes,
Chris


On 22/03/2018 13:42, Nelly wrote:

Dear All,

Kindly assist.
I am trying to generate CVA but this is not possible because initially 
i didn't ectract classifiers.
This is because my data appeared as numbers from1-70 in morphoj 
instead of sample ids that were in the .jpg file.

As shown below i.e 0,1,2,3.79.
Therefore i could not classify.
How can this be corrected so that i have the full names instead of 
numbers in the classifier column.



Kindly assist.
Nelly Ndungu
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