Re: [MORPHMET] MorphoJ: problem with reading the tps files

2019-01-02 Thread f.james.rohlf
Yes, on the options menu there is an option to set the decimal charactet.


__F. James Rohlf, Distinguished Prof. Emeritus Dept. 
Anthropology and Ecology & Evolution Stonybrook University
 Original message From: morphmet  
Date: 1/2/19  7:02 AM  (GMT-10:00) To: morphmet@morphometrics.org Subject: Re: 
[MORPHMET] MorphoJ: problem with reading the tps files 
Your system is set up to us commas (',') to mark the decimal instead of 
the period ('.'). I think there is an option as to which to use within 
the tps programs. Some morphometrics programs assume the use of the 
period. -ds

On 12/31/18 2:55 PM, Ewa Krzeminska wrote:
> When trying to create a dataset from a tps file I got a response: Invalid 
> number format in the file. The file was created in TpsDig, and the text in a 
> notepad is:
> LM=18
> 943,0 1455,0
> 902,0 1097,0
> 947,0 981,0
> 954,0 866,0
> 945,0 632,0
> 954,0 397,0
> 817,0 1313,0
> 664,0 1335,0
> 797,0 1429,0
> 559,0 1477,0
> 679,0 1503,0
> 391,0 1217,0
> 485,0 1093,0
> 533,0 914,0
> 880,0 809,0
> 849,0 715,0
> 707,0 802,0
> 496,0 632,0
> IMAGE=3572.jpg
> ID=0
> 
> The option "tps" was chosen. What can be wrong?
> 

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Re: [MORPHMET] MorphoJ: problem with reading the tps files

2019-01-02 Thread morphmet
Your system is set up to us commas (',') to mark the decimal instead of 
the period ('.'). I think there is an option as to which to use within 
the tps programs. Some morphometrics programs assume the use of the 
period. -ds


On 12/31/18 2:55 PM, Ewa Krzeminska wrote:

When trying to create a dataset from a tps file I got a response: Invalid 
number format in the file. The file was created in TpsDig, and the text in a 
notepad is:
LM=18
943,0 1455,0
902,0 1097,0
947,0 981,0
954,0 866,0
945,0 632,0
954,0 397,0
817,0 1313,0
664,0 1335,0
797,0 1429,0
559,0 1477,0
679,0 1503,0
391,0 1217,0
485,0 1093,0
533,0 914,0
880,0 809,0
849,0 715,0
707,0 802,0
496,0 632,0
IMAGE=3572.jpg
ID=0

The option "tps" was chosen. What can be wrong?



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[MORPHMET] MorphoJ: problem with reading the tps files

2019-01-02 Thread Ewa Krzeminska
When trying to create a dataset from a tps file I got a response: Invalid 
number format in the file. The file was created in TpsDig, and the text in a 
notepad is:
LM=18
943,0 1455,0
902,0 1097,0
947,0 981,0
954,0 866,0
945,0 632,0
954,0 397,0
817,0 1313,0
664,0 1335,0
797,0 1429,0
559,0 1477,0
679,0 1503,0
391,0 1217,0
485,0 1093,0
533,0 914,0
880,0 809,0
849,0 715,0
707,0 802,0
496,0 632,0
IMAGE=3572.jpg
ID=0

The option "tps" was chosen. What can be wrong?

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[MORPHMET] Course Mapping Trait Evolution, June 3-7, Barcelona (Spain)

2019-01-02 Thread soledad . esteban

Dear colleagues,



  
This course might be of interest for people in this list: “Mapping Trait 
Evolution”, June 3rd-7th, 2019.



  
Instructor: Dr. Jeroen Smaers (Stony Brook University, USA) and Carrie Mongle 
(Stony Brook University, USA).



  
If you are a PhD student you can APPLY FOR SCHOLARSHIP: 
https://www.transmittingscience.org/funding/scholarships-application/
  


  
PROGRAM:



  
Monday. (R packages: ape, Geiger).
  
Morning: Phylogenetic data.
 
 - What is the basic structure of phylogenetic data?   
 - How to visualize and manipulate phylogenetic data?
Afternoon: Models of evolution.
 
 - What are models of evolution?   
 - What are the assumptions of the different models of evolution?   
 - How are models of evolution utilized?
Tuesday. (R packages: ape, nlme, caper, evomap).
  
Morning: Phylogenetic regression.
 
 - Assumptions, properties, and applications of the phylogenetic regression.
Afternoon: Phylogenetic ancova.
 
 - Testing for grade shifts using the phylogenetic regression.
Wednesday. (R packages: phytools, motmot, geiger, ape, evomap, BayesTraits).
  
Morning: Ancestral estimation.
 
 - Using models of evolution to estimate values of ancestral nodes.
Afternoon: Analysis of rates of evolution.
 
 - Estimation of rates of evolution.   
 - Testing hypothesis about rates of evolution.
Thursday. (R packages: bayou, phylolm, surface, OUwie, mvMORPH).
  
Morning: Inferring the structure of a macroevolutionary landscape.
 
 - Using Ornstein-Uhlenbeck models to map macroevolutionary patterns.
Afternoon: Testing the structure of a macroevolutionary landscape.
 
 - Applications and assumptions of OU models.   
 - Using OU models to test macroevolutionary hypotheses.
Friday. (R packages: geomorph).
  
Morning: Modularity and integration.
 
 - What is ‘phylogenetic’ modularity and integration?   
 - Applications and assumptions.
Afternoon: Case study.
  


  
MORE INFO: http://bit.ly/transmittingscience-mapping-trait-evolution  or 
writing to cour...@transmittingscience.org 




  
With best regards



  
Sole

Soledad De Esteban-Trivigno
Institut Català de Paleontologia Miquel Crusafont (ICP)

Campus de la Universitat Autònoma de Barcelona

Cerdanyola del Vallès (Barcelona). Spain

www.icp.cat
  
 

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