Re: [MORPHMET] Script to read Avizo landmarks and B-splines

2019-04-14 Thread Miguel Eduardo Delgado Burbano 
Dear Murat and Antonio,

Thanks for your fast response. Of course Murat here I attach the
corresponding files (they derived from Avizo not from Amira)

Antonio yes I tried to use the Arothron function read.amira.set () but the
following error appeared: argument "nland" is missing, with no default.

Here I attach three files one is Landmarks_LLM1_landmarksAscii (landmarks
from a human lower molar) and one B-spline in Avizo binary (*.am) format
and the same file in Avizo ascii (*.am) format
(zan0084_manleft_mirrored_01_curve_LM1.am and
zan0084_manleft_mirrored_01_curveascii_LM1.am)

Thanks for your help

All best,


El lun., 15 de abr. de 2019 8:15 a. m., Murat Maga  escribió:

> Dear Antonio and Miguel,
>
>
>
> Would it be possible to share those files with me as well? I would like to
> implement a way to import Amira landmark files into our SlicerMorph
> package, but we don’t have any to play with.
>
>
>
> Best,
>
> M
>
>
>
>
>
> *From:* Antonio Profico 
> *Sent:* Sunday, April 14, 2019 4:35 PM
> *To:* Miguel Eduardo Delgado Burbano 
> *Cc:* MORPHMET ;
> morphmet-requ...@morphometrics.org
> *Subject:* Re: [MORPHMET] Script to read Avizo landmarks and B-splines
>
>
>
> Hi Miguel,
>
>
>
> please send me the two files from Avizo (.ladmarkAscii) and B-splines
> (.am).
>
> Are you sure that read.amira.set() doesn't work with the .landmarkAscii
> files from Avizo?
>
>
>
> I'll add these two functions in Arothron and before to submit the new
> release to the CRAN I'll send them to you.
>
>
>
> Best,
>
>
> Antonio
>
>
>
> Il giorno lun 15 apr 2019 alle ore 01:26 Miguel Eduardo Delgado Burbano <
> mdelgadoburb...@gmail.com> ha scritto:
>
> Dear All,
>
>
>
> I'm using landmarks (.ladmarkAscii) and B-splines (.am) derived from Avizo
> (Standard Edition 7.1.0). I have used previously the Arothron and Nat
> packages to load landmarks derived from Amira into the R console. Now
> using the Avizo files such packages do not seem to work. Somebody has a
> script to read Avizo files in R or know a way to succesfully load such
> files into the R console? Thanks for any suggestion
>
>
>
> All best,
>
>
>
> Miguel
>
> --
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>
>
>
> --
>
> __
>
> Antonio Profico
> PhD
> Department of Environmental Biology – Dipartimento di Biologia Ambientale
> SAPIENZA Università di Roma
>
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>
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>
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>
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> Mob. 3293440766
>
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# Avizo 3D ASCII 2.0


define Markers 11

Parameters {
Color "1.0.9",
NumSets 1,
ContentType "LandmarkSet"
}

Markers { float[3] Coordinates } @1

# Data section follows
@1
1.069824981689453e+002 3.230857086181641e+001 7.741726684570313e+001 
1.067253570556641e+002 3.117101860046387e+001 7.906603240966797e+001 
1.071337509155273e+002 3.062068939208984e+001 8.174322509765625e+001 
1.044278793334961e+002 3.029200363159180e+001 8.385526275634766e+001 
1.035018234252930e+002 3.330528259277344e+001 8.359550476074219e+001 
1.009194259643555e+002 3.421195983886719e+001 8.097939300537109e+001 
1.022753219604492e+002 3.590150451660156e+001 7.821498870849609e+001 
1.029237899780273e+002 3.457044982910156e+001 7.538016510009766e+001 
1.053571166992188e+002 3.398883819580078e+001 7.497612762451172e+001 
1.059745407104492e+002 3.266828918457031e+001 7.570597839355469e+001 
1.031460418701172e+002 3.211197662353516e+001 7.892837524414063e+001 

# Avizo 3D ASCII 2.0


define Lines 101
nVertices 100

Parameters {
ContentType "HxLineSet"
}

Lines { int LineIdx } @1
Vertices { float[3] Coordinates } @2

# Data section follows
@1
0 
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Re: [MORPHMET] Script to read Avizo landmarks and B-splines

2019-04-14 Thread Antonio Profico 
Hi Miguel,

please send me the two files from Avizo (.ladmarkAscii) and B-splines (.am).
Are you sure that read.amira.set() doesn't work with the .landmarkAscii
files from Avizo?

I'll add these two functions in Arothron and before to submit the new
release to the CRAN I'll send them to you.

Best,

Antonio

Il giorno lun 15 apr 2019 alle ore 01:26 Miguel Eduardo Delgado Burbano <
mdelgadoburb...@gmail.com> ha scritto:

> Dear All,
>
> I'm using landmarks (.ladmarkAscii) and B-splines (.am) derived from Avizo
> (Standard Edition 7.1.0). I have used previously the Arothron and Nat
> packages to load landmarks derived from Amira into the R console. Now
> using the Avizo files such packages do not seem to work. Somebody has a
> script to read Avizo files in R or know a way to succesfully load such
> files into the R console? Thanks for any suggestion
>
> All best,
>
> Miguel
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
> ---
> You received this message because you are subscribed to the Google Groups
> "MORPHMET" group.
> To unsubscribe from this group and stop receiving emails from it, send an
> email to morphmet+unsubscr...@morphometrics.org.
>


-- 
__

Antonio Profico
PhD
Department of Environmental Biology – Dipartimento di Biologia Ambientale
SAPIENZA Università di Roma

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Subscription: https://groups.google.com/forum/#!forum/microwear/join

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Lab.  06 4991 2690
Mob. 3293440766

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[MORPHMET] Script to read Avizo landmarks and B-splines

2019-04-14 Thread Miguel Eduardo Delgado Burbano 
Dear All,

I'm using landmarks (.ladmarkAscii) and B-splines (.am) derived from Avizo
(Standard Edition 7.1.0). I have used previously the Arothron and Nat
packages to load landmarks derived from Amira into the R console. Now using
the Avizo files such packages do not seem to work. Somebody has a script to
read Avizo files in R or know a way to succesfully load such files into the
R console? Thanks for any suggestion

All best,

Miguel

-- 
MORPHMET may be accessed via its webpage at http://www.morphometrics.org
--- 
You received this message because you are subscribed to the Google Groups 
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