Skip,
As a work around you can subset your own data. All the values you will need to
do your own PCA scatter plot is in the
pseudoxy.PCA$pcscores.
That way, you get to do choose the coloring scheme and symbols.
From: Phillip Skipwith [mailto:pskipw...@gmail.com]
Sent: Friday, January 5, 2018
Skip,
It is difficult to troubleshoot this without seeing your full code and data
file. If you send me those off-line I can try to take a look in the near future
to identify what is going on.
Dean
Dr. Dean C. Adams
Professor
Department of Ecology, Evolution, and Organismal Biology