[MORPHMET] sampling error references

2014-09-01 Thread andrea cardini
much appreciated. Thanks in advance. Cheers Andrea Dr. Andrea Cardini Researcher in Animal Biology, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, l.go S. Eufemia 19, 41121 Modena, Italy Adjunct Associate Professor, Centre for Forensic Science

[MORPHMET] sampling error references

2014-09-02 Thread andrea cardini
much appreciated. Thanks in advance. Cheers Andrea Dr. Andrea Cardini Researcher in Animal Biology, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, l.go S. Eufemia 19, 41121 Modena, Italy Adjunct Associate Professor, Centre for Forensic Science

[MORPHMET] trick for editing svg images from MorphoJ + reference about 2D/3D

2014-11-14 Thread andrea cardini
for any suggestion and/or pdf. Cheers Andrea Dr. Andrea Cardini Researcher in Animal Biology, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, l.go S. Eufemia 19, 41121 Modena, Italy Adjunct Associate Professor, Centre for Forensic Science

[MORPHMET] estimates of (some) errors in geometric morphometrics

2015-01-16 Thread andrea cardini
the third dimension in geometric morphometrics: how to assess if 2D images really are a good proxy for 3D structures? Hystrix, in press. DOI:10.4404/hystrix-25.2-10993 http://www.italian-journal-of-mammalogy.it/article/view/10993/pdf_10993 (free and open access) Cheers Andrea Dr. Andrea

Re: [MORPHMET] CVA and Discriminant Analysis in Morpho J

2015-02-11 Thread andrea cardini
+unsubscr...@morphometrics.org. Dr. Andrea Cardini Researcher in Animal Biology, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, l.go S. Eufemia 19, 41121 Modena, Italy Adjunct Associate Professor, Centre for Forensic Science , The University of Western

[MORPHMET] geometric morphometrics in Budapest

2015-06-09 Thread andrea cardini
Dear All, I was wondering whether there's anyone doing (or interested in) geometric morphometrics in Budapest. Thanks in advance for any answer. Cheers Andrea Dr. Andrea Cardini Researcher in Animal Biology, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio

Re: [MORPHMET] phylogenetic signal

2015-10-29 Thread andrea cardini
+unsubscr...@morphometrics.org>morphmet+unsubscr...@morphometrics.org. Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2058472 Adjunct Associate Professor, Centre for Foren

Re: [MORPHMET] 3D Shape Change Visualization

2015-12-15 Thread andrea cardini
e Groups "MORPHMET" group. To unsubscribe from this group and stop receiving emails from it, send an email to <mailto:morphmet+unsubscr...@morphometrics.org>morphmet+unsubscr...@morphometrics.org. Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche

Re: [MORPHMET] 3D Shape Change Visualization

2015-12-14 Thread andrea cardini
top receiving emails from it, send an email to <mailto:morphmet+unsubscr...@morphometrics.org>morphmet+unsubscr...@morphometrics.org. Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy

[MORPHMET] Morphoj with very large datasets

2016-05-27 Thread andrea cardini
. Probably this happened on the Linux side of my machine, which in fact is more powerful in terms of memory etc. than the Windows side. But possibly the OS is not really a factor. Thanks in advance for your feedback. Cheers Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze

Re: [MORPHMET] Sliding Semilandmarks

2016-02-18 Thread andrea cardini
. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2058472 Adjunct Associate Professor, Centre for Forensic Science , The University of Western Australia, 35 Stirling Highway, Crawley

[MORPHMET] using regression residuals for other analyses

2016-03-24 Thread andrea cardini
of the methods see it. Thanks in advance. Cheers Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2058472 Adjunct Associate Professor, Centre for Forensic Science

[MORPHMET] condylobasal length

2016-03-21 Thread andrea cardini
Hi All, a very simple question on a definition, please. Is there a univocal undisputed definition of condylobasal length? Or, are some researchers measuring slightly different things sometimes? Comments, pdfs or images are most welcome. Thanks in advance. Cheers Andrea -- Dr. Andrea

[MORPHMET] cranial size and body mass in felids

2016-03-03 Thread andrea cardini
Dear All, I'd be greatly very grateful for any suggestion on papers or web-pages with information on cranial size (length or other) and body mass in felids. References and/or pdf are most appreciated. Thanks a lot in advance. Cheers Andrea Dr. Andrea Cardini Researcher, Dipartimento di

THANKS Re: [MORPHMET] using regression residuals for other analyses

2016-03-29 Thread andrea cardini
t;mailto:dwor...@mcmaster.ca> -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2058472 Adjunct Associate Professor, Centre for Forensic Science , The University of Weste

Re: [MORPHMET] Using Semilandmarks

2016-05-12 Thread andrea cardini
ogía 108B Ed 53 - 3208320 Ext 4127 -- MORPHMET may be accessed via its webpage at http://www.morphometrics.org --- You received this message because you are subscribed to the Google Groups "MORPHMET" group. To unsubscribe from this group and stop receiving emails from it, send an email to morph

Re: [MORPHMET] landmarking a translucent matching symmetry object (like flywings)

2016-07-28 Thread andrea cardini
mails from it, send an email to morphmet+unsubscr...@morphometrics.org <mailto:morphmet+unsubscr...@morphometrics.org>. -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel.

[MORPHMET] geomorph and other packages in Linux Ubuntu

2016-07-19 Thread andrea cardini
. Cheers Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2058472 Adjunct Associate Professor, School of Anatomy, Physiology and Human Biology, The University

Re: [MORPHMET] symmetrizing data with bilateral symmetry

2016-07-05 Thread andrea cardini
ilto:morphmet+unsubscr...@morphometrics.org>. -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2058472 Adjunct Associate Professor, School of Anatomy, Physiology a

Re: [MORPHMET] using intermediate landmarks between semilandmarks

2017-01-17 Thread andrea cardini
le Groups "MORPHMET" group. To unsubscribe from this group and stop receiving emails from it, send an email to morphmet+unsubscr...@morphometrics.org <mailto:morphmet+unsubscr...@morphometrics.org>. -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Univ

Re: [MORPHMET] comparing static, evolutionary, and ontogenetic allometry

2016-08-22 Thread andrea cardini
using MANCOVA in GeoMorph). Thanks for any advice on how to compare these levels or if it even makes sense to compare ontogenetic allometry to either of the others. Christy - Christy Anna Hipsley University of Melbourne/Melbourne Museum -- Dr. Andrea Card

[MORPHMET] working on just one side of skulls etc.

2016-09-12 Thread andrea cardini
the other half by mirror reflection. Data and guidelines are provided as supplementary information. If someone is interested and can't download the papers, please do get in touch with me. They're not yet in my webpage. Cheers Andrea Cardini A. Lost in the other half: improving accuracy

[MORPHMET] papers on variance difference between sexes

2016-08-24 Thread andrea cardini
sexes or they found that one sex tends to vary more than the other. Thanks a lot in advance for your suggestions (and pdfs, if available!). Cheers Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103

[MORPHMET] managed to install Morphologika in Linux

2016-10-21 Thread andrea cardini
. Anyway, I just wanted to share this with the (probably few) people interested. By the way, with Morphologika I had troubles with the visualization in XP but that works wonderfully well in Linux. Have a nice weekend Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche

[MORPHMET] brain-body mass allometry in mammals

2016-11-04 Thread andrea cardini
Dear All, may I please ask you a suggestion on references? I am looking for a reasonably recent review on the allometric relationship between brain and body mass in mammals. Thanks in advance for your help, and my apologies for possible late answers. Cheers Andrea -- Dr. Andrea

[MORPHMET] PC Scores From Other PCA in MorphoJ

2016-12-12 Thread andrea cardini
taset (non-averaged) onto the vectors from the imported matrix but can't do it with the mean shapes (which is my aim). I'll do it in NTSYSpc or R, but I'd be curious to understand what I am getting wrong in MorphoJ. Thanks in advance for any suggestion. Cheers Andrea -- Dr. Andrea Cardini

Re: brief comment on non-significance Re: [MORPHMET] procD.allometry with group inclusion

2016-12-12 Thread andrea cardini
edu/%7Edcadams/> phone: 515-294-3834 *From:*Mike Collyer [mailto:mlcoll...@gmail.com] *Sent:* Monday, December 12, 2016 8:34 AM *To:* andrea cardini <alcard...@gmail.com> *Cc:* morphmet@morphometrics.org *Subject:* Re: brief comment on non-significance Re: [MORPHMET] procD.allometry with gro

[MORPHMET] geiger rescale error

2016-12-06 Thread andrea cardini
to type 'double' -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2058472 Adjunct Associate Professor, School of Anatomy, Physiology and Human Biology, The University of West

[MORPHMET] problem fixed

2016-12-06 Thread andrea cardini
Thanks to Marko Djurakic for finding the problem with the geiger function, and to all others who answered with suggestions: the issue was that another package had a function with the same name. Cheers Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche

[MORPHMET] TPS Series USERS: please, cite the correct ref.!

2017-01-03 Thread andrea cardini
s = {9--12} doi = {10.4404/hystrix-26.1-11264}, url = {http://www.italian-journal-of-mammalogy.it/article/view/11264} } -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 00

[MORPHMET] comparative MA

2016-12-19 Thread andrea cardini
to SMA in smatr, and the difference is still there even if I use a star phylogeny in phytools, which should make phytools SMA identical to smatr SMA. Any suggestion, please, for a comparative MA including a test for slope? Many thanks in advance. Cheers Andrea -- Dr. Andrea Cardini Researcher

[MORPHMET] mirror-relabeling R function

2017-07-03 Thread andrea cardini
Dear All, please, is there an R function that I could use to mirror-relabel a 3D landmark configuration? Thanks in advance. Cheers Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena

Re: [MORPHMET] Troubles exporting data sets in MorphoJ

2017-06-29 Thread andrea cardini
://www.morphometrics.org --- You received this message because you are subscribed to the Google Groups "MORPHMET" group. To unsubscribe from this group and stop receiving emails from it, send an email to morphmet+unsubscr...@morphometrics.org <mailto:morphmet+unsubscr...@morphometrics.org>. -- Dr

size will be missing Re: [MORPHMET] Save aligned in TPSRelW

2017-06-22 Thread andrea cardini
this message because you are subscribed to the Google Groups "MORPHMET" group. To unsubscribe from this group and stop receiving emails from it, send an email to morphmet+unsubscr...@morphometrics.org <mailto:morphmet+unsubscr...@morphometrics.org>. -- Dr. Andrea Cardini Researcher,

Re: size will be missing Re: [MORPHMET] Save aligned in TPSRelW

2017-06-22 Thread andrea cardini
in having, for those data, CS slightly different (=larger) from 1 as they MUST have CS larger than 1 by construction. However,I'm not sure at 100% if TPSrelw works as I hypothesized here.. Playing a bit with TPSrelw could unveil this. All the best Paolo 2017-06-22 11:00 GMT+02:00 andrea card

[MORPHMET] 1315 monkey skulls with 86 3D landmarks FREE DATASET + Wainer's Rule

2017-06-22 Thread andrea cardini
be also very happy to get some feedback on the 'Wainer's Rule', which in fact we don't know if it's a rule but hope it will be tested in more groups. Enjoy the data and, I hope, the paper! Cheers Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche

Re: [MORPHMET] number of landmarks and sample size

2017-06-01 Thread andrea cardini
unsubscribe from this group and stop receiving emails from it, send an email to morphmet+unsubscr...@morphometrics.org. -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059

Re: [MORPHMET] Re: number of landmarks and sample size

2017-05-31 Thread andrea cardini
l tests. There are ways to counter this issue (e.g., Q-mode approach recently proposed by Dean Adams). Now, concerning the sampling of bilateral landmarks, Andrea Cardini has recently written a nice pair of papers on the subject: Cardini, A. 2016. Left, right or both? Estimating and improving a

ONLINE DATA Re: [MORPHMET] Your opinion + a tiny piece of your exotic data

2017-09-18 Thread andrea cardini
p. To unsubscribe from this group and stop receiving emails from it, send an email to morphmet+unsubscr...@morphometrics.org <mailto:morphmet+unsubscr...@morphometrics.org>. -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia,

[MORPHMET] Re: PhD course on Bayesian stats

2017-09-12 Thread andrea cardini
/bayesinpractice.pdf. Please feel free to share this information with anyone who might be interested in your labs. I hope all is well! Cheers, Daniele -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125

[MORPHMET] pairwise matrix of vector angles in R

2017-11-03 Thread andrea cardini
Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2058472 Adjunct Associate Professor, School of Anatomy, Physiology and Human Biology, The University of Western

[MORPHMET] error in landmarks from MRI

2017-11-08 Thread andrea cardini
Dear All, I'd greatly appreciate references on measurement error in landmarks from MRI data. It does not matter if it's 2D or 3D as long as it is specific to MRI. Thanks in advance. Cheers Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università

[MORPHMET] FOR EARLY POST-DOCS Fwd: [dzg-evol] Berlin, Germany: College for Life Sciences Fellowships

2017-12-05 Thread andrea cardini
Dear all, this is not strictly morphometric but it could be on a morphometric project and looks like a wonderful opportunity for early post-docs. I've asked a few more details about eligibility. Here they are: "The program is open to all nationalities and there is no particular age limit

Re: [MORPHMET] Procrustes fit

2017-10-31 Thread andrea cardini
an idea to check Procrustes coordinates in TPSRelw. In TPSRelw I used File-Save-Aligned specimens and got Procrustes coordinates, I hope. But... There is no correlation between PC in MorphoJ and TPSRelw. What is wrong in my actions? Thank you -- Dr. Andrea Cardini Researcher, Dipartimento di

Re: [MORPHMET] Re: Digitizing landmarks on live larvae

2018-03-14 Thread andrea cardini
I guess it depends on what you plan to test/measure and the effect size you expect. Andrea Cardini has some papers that can give you some hint on this, such as: Cardini & Elton 2007 - Zoomorphology Cardini et al. 2015 - Zoomorphology Cardini & Elton 2017 - Hystrix They should be do

[MORPHMET] false positives in integration/modularity after Procrustes

2018-10-22 Thread andrea cardini
, and that issues might be even more serious using some of the most common methods for handling the increasing popular semilandmark data used to analyse 2D outlines and 3D surfaces. -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia

Re: [MORPHMET] Re: semilandmarks in biology

2018-11-07 Thread andrea cardini
; > > All the best > > > > Andrea > > > > 9 LANDMARKS PLUS 22 SLID SEMILANDMARKS > > > <https://groups.google.com/a/morphometrics.org/group/morphmet/attach/dcce33d95d952/oclbeaidoponnmni

[MORPHMET] homology function; isotropy

2018-12-06 Thread andrea cardini
lly: I won't share answers sent directly to me without asking. Cheers Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2058472 Adjunct Associate Professor, School o

[MORPHMET] new paper: elephant seal nose-metrics

2019-03-18 Thread andrea cardini
tests. Please, write me if you have no subscription and need the pdf, as it's not yet in my webpage. Cheers Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2058472

not exactlyRe: [MORPHMET] PREPRINT: between-group principal components analysis (bgPCA)

2019-05-15 Thread andrea cardini
: it's all in the introductory stats textbook, but I myself too often forget about it. -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2058472 Adjunct Associate

[MORPHMET] thanks for support

2019-05-16 Thread andrea cardini
this. You are one of the most honest and modest people I know, and I am glad that your side of this story is now in the open. You have my support, as always. Una On Wed, 15 May 2019, 06:33 andrea cardini, <mailto:alcard...@gmail.com>> wrote: I have to correct Fred on this: