Re: [MORPHMET] How to project shape difference onto different PC

2018-05-22 Thread Yinan Hu
space or in any direction of interest within the PC > space. > > > > _ _ _ _ _ _ _ _ _ > > F. James Rohlf, Distinguished Prof. Emeritus > > [image: univautosig] > > Depts. of Anthropology and of Ecology & Evolution > > > > > > *From:* Yi

RE: [MORPHMET] How to project shape difference onto different PC

2018-05-18 Thread F. James Rohlf
. _ _ _ _ _ _ _ _ _ F. James Rohlf, Distinguished Prof. Emeritus Depts. of Anthropology and of Ecology & Evolution From: Yinan Hu <yinanhu...@gmail.com> Sent: Friday, May 18, 2018 2:19 PM To: MORPHMET <morphmet@morphometrics.org> Subject: Re: [MORPHMET] How to project shape

Re: [MORPHMET] How to project shape difference onto different PC

2018-05-18 Thread Yinan Hu
Dear James, Thanks for the reply. Yes I have completed a PCA on a GM dataset with 11 landmarks, and you got it exactly right that I'm trying to decompose shape differences onto individual PCs. The reason I was hesitating to do the vector projection is that I'm not sure if PC scores on

Re: [MORPHMET] How to project shape difference onto different PC

2018-05-18 Thread K. James Soda
Dear Dr. Hu, Let me begin by restating how I understand the question: You have completed a PCA on a morphological data set in which there are two subsets of interest. Now you would like to decompose the difference between the two subsets into differences along individual PCs. Here is my two cents

[MORPHMET] How to project shape difference onto different PC

2018-05-18 Thread Yinan Hu
Dear colleagues, I'm trying to figure out how to break down shape differences onto individual PC axes. I have a morphospace where PC1 explains 60% of shape variation and PC2 explains 20% of variation. Two subsets of samples of particular interest do not differ much along PC1, but differs