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Ian at which level of the code you are getting an error? I am not seeing an= error message below.=20 If you mean your results are non-sensical, that can be due to a variety of = reasons beginning from inconsistent ordering of landmarks in samples. Perha= ps try with minimal options and modification, until you get more familiar w= ith geomorph and gpagen and its output. Starting with the provided example = in the ?gpagen and modifying it oo work with your own data would be a good = start.=20 M -----Original Message----- From: Ian F <ijames...@gmail.com>=20 Sent: Wednesday, August 1, 2018 11:12 AM To: MORPHMET <morphmet@morphometrics.org> Subject: [MORPHMET] Trouble with 2-D morphomeric analysis in geomorph I am trying to do an analysis of three specimens. I am using semi-landmarks= and having trouble. perhaps someone can point out mt error? these are my r= esults Generalized Procrustes Analysis with Partial Procrustes Superimposition -4 fixed landmarks 12 semilandmarks (sliders) 2-dimensional landmarks 6 GPA iterations to converge Minimized Bending Energy used Consensus (mean) Configuration X Y [1,] 0.51447153 -0.03794928 [2,] 0.36957021 0.11431610 [3,] -0.11602250 0.19898458 [4,] -0.40489951 0.11095030 [5,] -0.43738229 -0.09965594 [6,] -0.20913543 -0.09698422 [7,] 0.04257626 -0.09131803 [8,] 0.29799009 -0.04811314 it should be three individuals with 4 landmarks and 4 sliders each. i want = to perform PCA on the procrustes coordinates. my code and data are below. I= m new to R and its probably an easy fix im just really confused. any help i= s greatly appreciated. =20 Code: Y <- arrayspecs(coordsrformat, k=3D2, p=3D ncol(coordsrformat)/2) slidermatrix Y.gpa <- gpagen(Y,curves=3Dslidermatrix) =20 summary(Y.gpa) plot(Y.gpa) Y.gpa <- gpagen(Y,curves=3Dslidermatrix,ProcD=3DFALSE ) =20 summary(Y.gpa) plot(Y.gpa) a<-(Y.gpa$coords) plotTangentSpace(a)=20 slider matrix: =20 before slide after 5 6 7 7 8 1 1 2 3 3 4 5 1 8 7 7 6 5 5 4 3 3 2 1 1 2 3 3 4 5 5 6 7 7 8 1 coordsrformat: 1630 1827 1530 1549 1198 1345 908 1557 833 1840 1027 1895 1223 1907 1417 18= 87=20 2767 1081 2633 1581 2139 2047 1693 1753 1535 1159 1841 1067 2151 1009 2437 = 1071=20 2956 928 2936 1692 2112 2360 1300 1784 1304 1016 1700 888 2084 832 2480 872 --=20 MORPHMET may be accessed via its webpage at http://www.morphometrics.org ---=20 You received this message because you are subscribed to the Google Groups "= MORPHMET" group. To unsubscribe from this group and stop receiving emails from it, send an e= mail to morphmet+unsubscr...@morphometrics.org. --=20 MORPHMET may be accessed via its webpage at http://www.morphometrics.org ---=20 You received this message because you are subscribed to the Google Groups "= MORPHMET" group. To unsubscribe from this group and stop receiving emails from it, send an e= mail to morphmet+unsubscr...@morphometrics.org.