Re: [Mzmine-devel] mzmine2 java crash when using chrom deconvolution

2014-06-02 Thread Tomas Pluskal
Dear Felipe, You might be running out of memory, but I cannot tell for sure unless you give us more details about what you are actually doing. Please follow the 'How to report problems' section of the manual (see point 4): https://bit.ly/MZmineManual#h.ieegr3ccm53e Best regards, Tomas On Ju

[Mzmine-devel] mzmine2 java crash when using chrom deconvolution

2014-06-02 Thread Felipe Sarmiento Salazar
Dear Developers, I am using mzmine on my PC laptop (intel i5, 8GbRAM, 64bit windows) and I am having a recurrent error; whenever I try to run chromatogram deconvolution the program stalls and then this error appears "Java (TM) platform SE binay has stopped working". I have seen in your mailing lis

Re: [Mzmine-devel] Mzmine2

2013-12-20 Thread Nicholas Michael
just worked it out. My java was 32 bit. Downloading 64 bit java fixed it. :-) On 20 December 2013 19:02, Nicholas Michael wrote: > Hi, > > I cannot get mzmine2 to work. I get the below error. I'm using windows7. > Any ideas? > > thanks and merry Xmas > > > > [image: Inline images 1] > <>

[Mzmine-devel] Mzmine2

2013-12-20 Thread Nicholas Michael
Hi, I cannot get mzmine2 to work. I get the below error. I'm using windows7. Any ideas? thanks and merry Xmas [image: Inline images 1] <>-- Rapidly troubleshoot problems before they affect your business. Most IT organ

Re: [Mzmine-devel] MZMine2 cli interface

2010-11-26 Thread Florent Glück
Hi Tomas, Your suggestion sounds good and I'll do just that. I haven't had time to play much with the interface yet as I'm still working on another project (for another month or so). However, as soon as I'm done with it, I'll implement the functionality to load/save batch configs and let you kno

Re: [Mzmine-devel] MZMine2 cli interface

2010-11-23 Thread Tomas Pluskal
Hi Florent, MZmine 2 has a batch mode, which allows you to setup a batch of data processing steps, including the import of raw data and export of results. Therefore, I would suggest you to add extra functionality to save and load a batch configuration. In fact, the functionality to save paramet

[Mzmine-devel] MZMine2 cli interface

2010-11-23 Thread Florent Glück
Hello, MZMine2 looks like an excellent project, congratulations to all developers! Our lab is interested in developing a command line tool to extract features from MS1 data which would be the base of our label-free pipeline. Isotopic correction, deconvolution, filtering, etc. are also part of ou

Re: [Mzmine-devel] MZmine2 plugin question

2010-10-27 Thread Tomas Pluskal
Hi Jamie, There is no plugin for Agilent machines, you can be the first one to develop it! Best regards, Tomas On Oct 28, 2010, at 10:02 AM, Jamie W. Becker wrote: > Greetings, > > I love your software. I was wondering if there exists a plugin to open files > directly from Agilent Chemsta

[Mzmine-devel] MZmine2 plugin question

2010-10-27 Thread Jamie W. Becker
Greetings, I love your software. I was wondering if there exists a plugin to open files directly from Agilent Chemstation software (*.D folders or *.MS) in MZmine2. If not, are there any plans to develop such a plugin? Thanks so much, Jamie --