Dear Tomas,
It worked, thanks a lot.
i changed this
set JRI_LIB_PATH=%R_LIBS_USER%\rJava\jri\x64
to
set JRI_LIB_PATH=%R_LIBS_USER%\rJava\jri\x64;%R_LIBS%\rJava\jri\x64
--
Regards
GAO Yan
At 2014-10-30 11:05:27, "Tomas Pluskal" wrote:
>Hi Gao,
>
>I don't see any obvious problem in your se
Hi Gao,
I don't see any obvious problem in your settings. You mentioned that the
PeakInvestigator edition of MZmine works fine.
What happens if you copy the settings of the R-related variables from the
PeakInvestigator's startMZmine script into MZmine's startMZmine script?
I am talking about t
Hi Tomas,
I'm using MZmine for data processing and when i'm trying to use the
wavelets(XCMS) algorithm, the software shows " Couldn't start R. Please check
if R is installed and path to the libraries is set properly in the startMZmine
script".
The version of R installed is R-3.1.1 and it is in
Hi,
PeakInvestigator is a modified version of MZmine provided by different authors.
I cannot help you with your R problem if you provide no information. Please
follow the 'How to report problems' section of the MZmine 2 manual.
Best,
Tomas
On Oct 29, 2014, at 21:37, GY mailto:gzql...@163.com
Hi Tomas,
I'm still trying to figure out the r problem and I found that a MZmine
PeakInvestigator software. This software seems similar to MZmine and I can use
r using this software while for MZmine cannot. I'm wondering if it's the same
developer for these two software.
sorry to trouble yo
Hi Gao,
Please follow the 'How to report problems' section of the MZmine 2 manual.
Tomas
On Oct 28, 2014, at 16:19, GY mailto:gzql...@163.com>> wrote:
Hi Tomas,
I tried to modify the pathway but it didn't work. i got the same problem.
Thanks.
Gao Yan
At 2014-10-28 15:13:16, "Tomas Pluskal
Hi Tomas,
I tried to modify the pathway but it didn't work. i got the same problem.
Thanks.
Gao Yan
At 2014-10-28 15:13:16, "Tomas Pluskal" wrote:
>Hi Gao,
>
>1) R_HOME should be set to C:\Program Files\R\R-3.1.1 (not C:\Program
>Files\R\R-3.1.1\library), as described in MZmine manual.
>
Hi Gao,
1) R_HOME should be set to C:\Program Files\R\R-3.1.1 (not C:\Program
Files\R\R-3.1.1\library), as described in MZmine manual.
2) According to the output of your command packageDescription("xcms"), the XCMS
library is installed in
C:/Users/a0068387/Documents/R/win-library/3.1/xcms/Meta
Dear Tomas,
please find below for the script.
@echo off
rem Obtain the physical memory size
for /f "skip=1" %%p in ('wmic os get totalvisiblememorysize') do if not defined
TOTAL_MEMORY set TOTAL_MEMORY=%%p
rem The HEAP_SIZE variable defines the Java heap size in MB.
rem That is the tota
Hi Gao,
Did you change the R-related paths in your startMZmine script? Please send us
the script together with your problem report.
Best regards,
Tomas
On Oct 28, 2014, at 15:22, GY wrote:
>
>
> Hi,
>
> I'm using mzmine for data processing and when i'm trying to use the
> wavelets(XC
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