RE: [NMusers] Simultaneous vs sequential for modeling parent AND metabolites in pop PK

2008-12-10 Thread James G Wright
Nick Holford wrote: Non-proportionality (aka non-linearity) of metabolite formation from parent is not really an issue. With the right design (i.e. suitable doses of parent) then this can be discovered from just giving the parent. The key assumptions of metabolite models are about how the

[NMusers] OFV higher with FOCEI than FO

2008-12-10 Thread ayyappa . 5 . chaturvedula
Dear All, I am analyzing a data set pooled from 4 clinical studies with rich sampling. When I fit a 2 comp oral absorption model with lag time using FO, I got successful minimization with COV step, but minimization was not successful when I used FO parameter estimates as initial estimates for

[NMusers] OFV higher with FOCEI than FO

2008-12-10 Thread ayyappa . 5 . chaturvedula
Thank you all for the responses and it is very useful. Regards, Ayyappa Chaturvedula GlaxoSmithKline 1500 Littleton Road, Parsippany, NJ 07054 Ph:9738892200 __ Dear All, I am analyzing a data set pooled from 4 clinical studies with rich sampling. When I fit a 2 comp oral

RE: [NMusers] OFV higher with FOCEI than FO

2008-12-10 Thread Bob Leary
As shown by X. Wang, FO, FOCE and LAPLACE form a hierarchy of approximations. Both the FO and FOCE methods are based on the same underlying Laplacian approximation to the integral of the joint likelihood function of the random effects (eta's). The basic Laplace approximation requires

RE: [NMusers] OFV higher with FOCEI than FO

2008-12-10 Thread Matt Hutmacher
Hi Bob, I would just add one point of clarification. My understanding is that the FOCE approximate is a Laplace-based approximation (related to it) only if the within subject residual error model does not contain any subject-specific random effects. Wolfinger R (1993). Laplace's

Re: [NMusers] Simultaneous vs sequential for modeling parent AND metabolites in pop PK

2008-12-10 Thread Nick Holford
James, Mahesh, The F=1 fallacy has caused me no end of stress over the years, and next time I may have to contend with the (almost irrefutable) argument but Nick Holford said it was true. As I never said this was a fallacy I dont think you need be stressed by it. Everytime you use a model to

RE: [NMusers] Simultaneous vs sequential for modeling parent AND metabolites in pop PK

2008-12-10 Thread Samtani, Mahesh [PRDUS]
Dear Dr. Holford, All I was suggesting was that once you have decided on which assumption you like the most and start modeling the metabolite data then shouldn't simultaneous modeling of the parent + metabolite be more preferable? The model will take long run time any ways because it will be a

RE: [NMusers] Simultaneous vs sequential for modeling parent AND metabolites in pop PK

2008-12-10 Thread Wang, Yaning
Ziad: When FDA sends out a request, there should be a rationale for it. If it is not clear enough, the sponsors should ask for clarification. If after clarification, the sponsors felt the rationale is not scientific, then the sponsors should not hesitate to appeal such requests. The sponsors can

RE: [NMusers] Simultaneous vs sequential for modeling parent AND metabolites in pop PK

2008-12-10 Thread James G Wright
Hi Nick, You have written many things that are true, however I think we are differing on a very essential point. Nick Holford wrote Everytime you use a model to describe oral PK data alone you must make an assumption about the dose that is absorbed. You could make an assumption about this if

Re: [NMusers] Simultaneous vs sequential for modeling parent AND metabolites in pop PK

2008-12-10 Thread Nick Holford
James, I tried to deal with this in my previous reply. We do not differ. It is fine for me if you make the assumption that you do not know Fm and you estimate CLm/Fm and Vm/Fm. But this assumption in practice is an assumption that Fm=1 when you actually are estimating the parameters. There

RE: [NMusers] OFV higher with FOCEI than FO

2008-12-10 Thread Wang, Yaning
Matt: That's not true. Those two references are discussing when the linearized structure model can also be derived from direct Laplacian approximation of the marginal likelihood. When there is an interaction between residual and between subject variability (or residual error model contain