[jira] [Created] (CTAKES-410) Create cTAKES 3.2.3 Release

2016-12-06 Thread Pei Chen (JIRA)
Pei Chen created CTAKES-410: --- Summary: Create cTAKES 3.2.3 Release Key: CTAKES-410 URL: https://issues.apache.org/jira/browse/CTAKES-410 Project: cTAKES Issue Type: Task Affects Versions:

[jira] [Commented] (CTAKES-394) Please delete old releases from mirroring system

2016-02-03 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-394?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15130574#comment-15130574 ] Pei Chen commented on CTAKES-394: - Thanks Sebb for point that out. I'm not sure where the new release

[jira] [Assigned] (CTAKES-394) Please delete old releases from mirroring system

2016-02-02 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-394?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen reassigned CTAKES-394: --- Assignee: Pei Chen > Please delete old releases from mirroring system >

[jira] [Commented] (CTAKES-394) Please delete old releases from mirroring system

2016-02-02 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-394?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15129699#comment-15129699 ] Pei Chen commented on CTAKES-394: - done in r. 12194 > Please delete old releases from mirroring system >

[jira] [Resolved] (CTAKES-394) Please delete old releases from mirroring system

2016-02-02 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-394?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-394. - Resolution: Fixed > Please delete old releases from mirroring system >

[jira] [Commented] (CTAKES-393) ctakes-temporal demo page not loading

2016-01-04 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-393?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15081459#comment-15081459 ] Pei Chen commented on CTAKES-393: - rebooted instances. > ctakes-temporal demo page not loading >

[jira] [Resolved] (CTAKES-393) ctakes-temporal demo page not loading

2016-01-04 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-393?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-393. - Resolution: Fixed Assignee: Pei Chen AWS retired malfunctioning hardware. Rebooted. >

[jira] [Closed] (CTAKES-356) Create cTAKES 3.2.2 Release

2015-09-23 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-356?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen closed CTAKES-356. --- Resolution: Fixed > Create cTAKES 3.2.2 Release > --- > > Key:

[jira] [Created] (CTAKES-380) Placeholder - New Sentence Detector

2015-09-23 Thread Pei Chen (JIRA)
Pei Chen created CTAKES-380: --- Summary: Placeholder - New Sentence Detector Key: CTAKES-380 URL: https://issues.apache.org/jira/browse/CTAKES-380 Project: cTAKES Issue Type: Improvement

[jira] [Created] (CTAKES-379) Placeholder - ISO Time Normalizer (wrapper)

2015-09-23 Thread Pei Chen (JIRA)
Pei Chen created CTAKES-379: --- Summary: Placeholder - ISO Time Normalizer (wrapper) Key: CTAKES-379 URL: https://issues.apache.org/jira/browse/CTAKES-379 Project: cTAKES Issue Type: Bug

[jira] [Updated] (CTAKES-379) Placeholder - ISO Time Normalizer (wrapper)

2015-09-23 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-379?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-379: Fix Version/s: 3.2.3 > Placeholder - ISO Time Normalizer (wrapper) >

[jira] [Resolved] (CTAKES-364) Dictionary-Lookup-Fast will fail with URI is not Hierarchical

2015-08-20 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-364?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-364. - Resolution: Fixed Fix Version/s: 3.2.3 Dictionary-Lookup-Fast will fail with URI is not

[jira] [Commented] (CTAKES-374) Scaleout of cTAKES pipeline

2015-08-18 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-374?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14702366#comment-14702366 ] Pei Chen commented on CTAKES-374: - This would be a pretty cool feature and would be a nice

[jira] [Created] (CTAKES-364) Dictionary-Lookup-Fast will fail with URI is not Hierarchical

2015-06-25 Thread Pei Chen (JIRA)
Pei Chen created CTAKES-364: --- Summary: Dictionary-Lookup-Fast will fail with URI is not Hierarchical Key: CTAKES-364 URL: https://issues.apache.org/jira/browse/CTAKES-364 Project: cTAKES Issue

[jira] [Resolved] (CTAKES-360) ctakes-ytex jaxb2 plugin fails with 2.1

2015-05-13 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-360?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-360. - Resolution: Pending Closed ctakes-ytex jaxb2 plugin fails with 2.1

[jira] [Created] (CTAKES-360) ctakes-ytex jaxb2 plugin fails with 2.1

2015-05-12 Thread Pei Chen (JIRA)
Pei Chen created CTAKES-360: --- Summary: ctakes-ytex jaxb2 plugin fails with 2.1 Key: CTAKES-360 URL: https://issues.apache.org/jira/browse/CTAKES-360 Project: cTAKES Issue Type: Bug

[jira] [Created] (CTAKES-359) UMLS Authentication failing despite correct username and password

2015-05-11 Thread Pei Chen (JIRA)
Pei Chen created CTAKES-359: --- Summary: UMLS Authentication failing despite correct username and password Key: CTAKES-359 URL: https://issues.apache.org/jira/browse/CTAKES-359 Project: cTAKES

[jira] [Created] (CTAKES-356) Create cTAKES 3.2.2 Release

2015-05-04 Thread Pei Chen (JIRA)
Pei Chen created CTAKES-356: --- Summary: Create cTAKES 3.2.2 Release Key: CTAKES-356 URL: https://issues.apache.org/jira/browse/CTAKES-356 Project: cTAKES Issue Type: Task Affects Versions:

[jira] [Updated] (CTAKES-302) Element type hibernate-mapping must be followed by either attribute specifications, or /.

2015-04-30 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-302?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-302: Fix Version/s: (was: 3.2.2) 3.2.3 Element type hibernate-mapping must be followed

[jira] [Updated] (CTAKES-341) FractionFSM annotates incorrect span

2015-04-30 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-341?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-341: Fix Version/s: (was: 3.2.2) 3.2.3 FractionFSM annotates incorrect span

[jira] [Updated] (CTAKES-320) Methods used by getDefaultPipeline should be able to load reasonable defaults without expecting external files.

2015-04-30 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-320?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-320: Fix Version/s: (was: 3.2.2) 3.2.3 Methods used by getDefaultPipeline should be

[jira] [Resolved] (CTAKES-338) Download/Unpack full LVG by default

2015-04-30 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-338?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-338. - Resolution: Fixed Modifed in the pom since r. https://svn.apache.org/r1642706 Download/Unpack full LVG

[jira] [Updated] (CTAKES-78) Update Chunker unit tests

2015-04-30 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-78?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-78: --- Fix Version/s: (was: 3.2.2) 3.2.3 Update Chunker unit tests -

[jira] [Updated] (CTAKES-76) get third party dependencies into Maven Central

2015-04-30 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-76?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-76: --- Fix Version/s: (was: 3.2.2) 3.2.3 get third party dependencies into Maven Central

[jira] [Updated] (CTAKES-295) Use UIMAFit-style configuration annotations

2015-04-30 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-295?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-295: Fix Version/s: (was: 3.2.2) 3.2.3 Use UIMAFit-style configuration annotations

[jira] [Updated] (CTAKES-138) Remove 3rd party jars from our SVN

2015-04-30 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-138?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-138: Fix Version/s: (was: 3.2.2) 3.2.3 Remove 3rd party jars from our SVN

[jira] [Updated] (CTAKES-122) include LVG with a future version of cTAKES?

2015-04-30 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-122?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-122: Fix Version/s: (was: 3.2.2) 3.2.3 include LVG with a future version of cTAKES?

[jira] [Updated] (CTAKES-213) ModifierExtractorAnnotator should produce XxxxModifier subtypes

2015-04-30 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-213?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-213: Fix Version/s: (was: 3.2.2) 3.2.3 ModifierExtractorAnnotator should produce

[jira] [Updated] (CTAKES-232) change concept type

2015-04-30 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-232?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-232: Fix Version/s: (was: 3.2.2) 3.2.3 change concept type ---

[jira] [Updated] (CTAKES-74) Tokenizer PennTreeBank breaks with certain apostrophes in tokens.

2015-04-30 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-74?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-74: --- Fix Version/s: (was: 3.2.2) 3.2.3 Tokenizer PennTreeBank breaks with certain

[jira] [Updated] (CTAKES-172) relation-extractor is using StatusAnnotator and NegationAnnotator instead of AssertionAnnotator

2015-04-30 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-172?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-172: Fix Version/s: (was: 3.2.2) 3.2.3 relation-extractor is using StatusAnnotator and

[jira] [Updated] (CTAKES-155) SimpleSegmentWithTagsAnnotator assumes all section names are 5 characters

2015-04-30 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-155?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-155: Fix Version/s: (was: 3.2.2) 3.2.3 SimpleSegmentWithTagsAnnotator assumes all

[jira] [Commented] (CTAKES-347) AggregateCdaProcessor fails with URI is not hierarchical

2015-04-29 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-347?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14519394#comment-14519394 ] Pei Chen commented on CTAKES-347: - I can recreate this with the 3.2.1 binary distribution.

[jira] [Assigned] (CTAKES-347) AggregateCdaProcessor fails with URI is not hierarchical

2015-04-29 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-347?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen reassigned CTAKES-347: --- Assignee: Pei Chen AggregateCdaProcessor fails with URI is not hierarchical

[jira] [Resolved] (CTAKES-347) AggregateCdaProcessor fails with URI is not hierarchical

2015-04-29 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-347?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-347. - Resolution: Fixed AggregateCdaProcessor fails with URI is not hierarchical

[jira] [Created] (CTAKES-354) Improved Temporal Relation Models - Thanks Chen Lin

2015-04-28 Thread Pei Chen (JIRA)
Pei Chen created CTAKES-354: --- Summary: Improved Temporal Relation Models - Thanks Chen Lin Key: CTAKES-354 URL: https://issues.apache.org/jira/browse/CTAKES-354 Project: cTAKES Issue Type:

[jira] [Updated] (CTAKES-283) Avoid duplicate generation of JCas classes

2015-04-28 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-283?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-283: Fix Version/s: 3.2.2 Avoid duplicate generation of JCas classes

[jira] [Resolved] (CTAKES-283) Avoid duplicate generation of JCas classes

2015-04-28 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-283?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-283. - Resolution: Fixed Avoid duplicate generation of JCas classes --

[jira] [Created] (CTAKES-355) Upgrade to UIMA 2.7.x

2015-04-28 Thread Pei Chen (JIRA)
Pei Chen created CTAKES-355: --- Summary: Upgrade to UIMA 2.7.x Key: CTAKES-355 URL: https://issues.apache.org/jira/browse/CTAKES-355 Project: cTAKES Issue Type: Improvement Affects Versions:

[jira] [Commented] (CTAKES-342) Revamp cTAKES website

2015-01-28 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-342?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14295390#comment-14295390 ] Pei Chen commented on CTAKES-342: - And anyone who may be interested- I verified

[jira] [Reopened] (CTAKES-334) GramMatrixExporterImpl initialization failed

2015-01-14 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-334?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen reopened CTAKES-334: - GramMatrixExporterImpl initialization failed

[jira] [Commented] (CTAKES-334) GramMatrixExporterImpl initialization failed

2015-01-14 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-334?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14277213#comment-14277213 ] Pei Chen commented on CTAKES-334: - Ephi, I temp reopened the issue. I did a diff with the

[jira] [Created] (CTAKES-344) Add DrugNER to clinical-pipeline

2014-12-18 Thread Pei Chen (JIRA)
Pei Chen created CTAKES-344: --- Summary: Add DrugNER to clinical-pipeline Key: CTAKES-344 URL: https://issues.apache.org/jira/browse/CTAKES-344 Project: cTAKES Issue Type: Improvement Affects

[jira] [Resolved] (CTAKES-344) Add DrugNER to clinical-pipeline

2014-12-18 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-344?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-344. - Resolution: Fixed Assignee: Pei Chen Add DrugNER to clinical-pipeline

[jira] [Resolved] (CTAKES-323) Create a 3.2.1 Release

2014-12-18 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-323?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-323. - Resolution: Fixed Create a 3.2.1 Release -- Key: CTAKES-323

[jira] [Created] (CTAKES-338) Download/Unpack full LVG by default

2014-12-01 Thread Pei Chen (JIRA)
Pei Chen created CTAKES-338: --- Summary: Download/Unpack full LVG by default Key: CTAKES-338 URL: https://issues.apache.org/jira/browse/CTAKES-338 Project: cTAKES Issue Type: Improvement

[jira] [Resolved] (CTAKES-335) url typo in ctakessql.xml

2014-11-25 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-335?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-335. - Resolution: Fixed Fix Version/s: 3.2.1 Assignee: Pei Chen url typo in ctakessql.xml

[jira] [Updated] (CTAKES-336) Allow constituency parser to allow reading of model from input stream

2014-11-25 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-336?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-336: Affects Version/s: 3.2.0 Allow constituency parser to allow reading of model from input stream

[jira] [Updated] (CTAKES-336) Allow constituency parser to allow reading of model from input stream

2014-11-25 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-336?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-336: Fix Version/s: 3.2.1 Allow constituency parser to allow reading of model from input stream

[jira] [Created] (CTAKES-335) url typo in ctakessql.xml

2014-11-24 Thread Pei Chen (JIRA)
Pei Chen created CTAKES-335: --- Summary: url typo in ctakessql.xml Key: CTAKES-335 URL: https://issues.apache.org/jira/browse/CTAKES-335 Project: cTAKES Issue Type: Bug Components:

[jira] [Created] (CTAKES-332) Upgrade to OpenNLP 1.5.2 - 1.5.3

2014-11-18 Thread Pei Chen (JIRA)
Pei Chen created CTAKES-332: --- Summary: Upgrade to OpenNLP 1.5.2 - 1.5.3 Key: CTAKES-332 URL: https://issues.apache.org/jira/browse/CTAKES-332 Project: cTAKES Issue Type: Bug Components:

[jira] [Created] (CTAKES-333) jwnl-1.3.3.jar; error in opening zip file

2014-11-18 Thread Pei Chen (JIRA)
Pei Chen created CTAKES-333: --- Summary: jwnl-1.3.3.jar; error in opening zip file Key: CTAKES-333 URL: https://issues.apache.org/jira/browse/CTAKES-333 Project: cTAKES Issue Type: Bug Affects

[jira] [Resolved] (CTAKES-333) jwnl-1.3.3.jar; error in opening zip file

2014-11-18 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-333?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-333. - Resolution: Fixed jwnl-1.3.3.jar; error in opening zip file -

[jira] [Assigned] (CTAKES-333) jwnl-1.3.3.jar; error in opening zip file

2014-11-18 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-333?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen reassigned CTAKES-333: --- Assignee: Pei Chen jwnl-1.3.3.jar; error in opening zip file

[jira] [Assigned] (CTAKES-332) Upgrade to OpenNLP 1.5.2 - 1.5.3

2014-11-18 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-332?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen reassigned CTAKES-332: --- Assignee: Pei Chen Upgrade to OpenNLP 1.5.2 - 1.5.3 -

[jira] [Resolved] (CTAKES-332) Upgrade to OpenNLP 1.5.2 - 1.5.3

2014-11-18 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-332?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-332. - Resolution: Fixed Upgrade to OpenNLP 1.5.2 - 1.5.3 -

[jira] [Updated] (CTAKES-325) Default pipeline to use dictionary-lookup-fast

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-325?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-325: Attachment: ctakes-dictionary-lookup-fast.jpg Default pipeline to use dictionary-lookup-fast

[jira] [Updated] (CTAKES-325) Default pipeline to use dictionary-lookup-fast

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-325?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-325: Attachment: ctakes-dictionary-lookup.jpg Default pipeline to use dictionary-lookup-fast

[jira] [Created] (CTAKES-330) runctakesCVD.sh autoload pipeline

2014-11-07 Thread Pei Chen (JIRA)
Pei Chen created CTAKES-330: --- Summary: runctakesCVD.sh autoload pipeline Key: CTAKES-330 URL: https://issues.apache.org/jira/browse/CTAKES-330 Project: cTAKES Issue Type: Bug Reporter:

[jira] [Resolved] (CTAKES-162) Command line scripts leave the user back one directory

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-162?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-162. - Resolution: Fixed Assignee: Pei Chen (was: James Joseph Masanz) Command line scripts leave the

[jira] [Updated] (CTAKES-325) Create aggregate pipeline to use dictionary-lookup-fast

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-325?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-325: Summary: Create aggregate pipeline to use dictionary-lookup-fast (was: Default pipeline to use

[jira] [Resolved] (CTAKES-325) Create aggregate pipeline to use dictionary-lookup-fast

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-325?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-325. - Resolution: Fixed Create aggregate pipeline to use dictionary-lookup-fast

[jira] [Resolved] (CTAKES-329) Add temporal event-event and event-time relation discovery models

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-329?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-329. - Resolution: Fixed Add temporal event-event and event-time relation discovery models

[jira] [Resolved] (CTAKES-94) refactoring assertion module to use a cleartk-based analysis engine (and include evaluation)

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-94?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-94. Resolution: Fixed refactoring assertion module to use a cleartk-based analysis engine (and include

[jira] [Updated] (CTAKES-124) remove internal UIMA types from coreference

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-124?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-124: Fix Version/s: (was: 3.2.1) 3.2.2 remove internal UIMA types from coreference

[jira] [Closed] (CTAKES-315) Update Default UMLS pipeline to use dictionary-lookup-fast

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-315?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen closed CTAKES-315. --- Resolution: Duplicate Update Default UMLS pipeline to use dictionary-lookup-fast

[jira] [Updated] (CTAKES-76) get third party dependencies into Maven Central

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-76?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-76: --- Fix Version/s: (was: 3.2.1) 3.2.2 get third party dependencies into Maven Central

[jira] [Updated] (CTAKES-138) Remove 3rd party jars from our SVN

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-138?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-138: Fix Version/s: (was: 3.2.1) 3.2.2 Remove 3rd party jars from our SVN

[jira] [Updated] (CTAKES-74) Tokenizer PennTreeBank breaks with certain apostrophes in tokens.

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-74?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-74: --- Fix Version/s: (was: 3.2.1) 3.2.2 Tokenizer PennTreeBank breaks with certain

[jira] [Resolved] (CTAKES-225) Common Type System - Add field to save preferredText in Segment

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-225?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-225. - Resolution: Fixed Common Type System - Add field to save preferredText in Segment

[jira] [Updated] (CTAKES-155) SimpleSegmentWithTagsAnnotator assumes all section names are 5 characters

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-155?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-155: Fix Version/s: (was: 3.2.1) 3.2.2 SimpleSegmentWithTagsAnnotator assumes all

[jira] [Resolved] (CTAKES-241) NullPointerException in ctakes-assertion

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-241?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-241. - Resolution: Won't Fix Assignee: Pei Chen Use the new clearTK based assertion modules

[jira] [Updated] (CTAKES-172) relation-extractor is using StatusAnnotator and NegationAnnotator instead of AssertionAnnotator

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-172?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-172: Fix Version/s: (was: 3.2.1) 3.2.2 relation-extractor is using StatusAnnotator and

[jira] [Updated] (CTAKES-213) ModifierExtractorAnnotator should produce XxxxModifier subtypes

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-213?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-213: Fix Version/s: (was: 3.2.1) 3.2.2 ModifierExtractorAnnotator should produce

[jira] [Updated] (CTAKES-122) include LVG with a future version of cTAKES?

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-122?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-122: Fix Version/s: (was: 3.2.1) 3.2.2 include LVG with a future version of cTAKES?

[jira] [Resolved] (CTAKES-222) FirstTokenPermLookupInitializerImpl to suppot arraylist of DictionaryLookupWindows

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-222?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-222. - Resolution: Won't Fix Assignee: Pei Chen use new dictionary-lookup-fast module instead.

[jira] [Updated] (CTAKES-232) change concept type

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-232?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-232: Affects Version/s: (was: future enhancement) 3.2.0 change concept type

[jira] [Updated] (CTAKES-78) Update Chunker unit tests

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-78?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-78: --- Fix Version/s: (was: 3.2.1) 3.2.2 Update Chunker unit tests -

[jira] [Updated] (CTAKES-275) some of the older junit tests don't have the right Project name in the run configurations

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-275?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-275: Fix Version/s: (was: 3.2.1) 3.2.2 some of the older junit tests don't have the

[jira] [Updated] (CTAKES-178) parsing of medication strength does not verify a number was discovered (strength value includes both the dosage and strength value in some cases)

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-178?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-178: Fix Version/s: (was: 3.2.1) 3.2.2 parsing of medication strength does not verify a

[jira] [Updated] (CTAKES-77) Update POSTagger Unit Tests

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-77?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-77: --- Fix Version/s: (was: 3.2.1) 3.2.2 Update POSTagger Unit Tests

[jira] [Updated] (CTAKES-302) Element type hibernate-mapping must be followed by either attribute specifications, or /.

2014-11-07 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-302?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-302: Fix Version/s: (was: 3.2.1) 3.2.2 Element type hibernate-mapping must be followed

[jira] [Commented] (CTAKES-325) Default pipeline to use dictionary-lookup-fast

2014-11-05 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-325?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14199105#comment-14199105 ] Pei Chen commented on CTAKES-325: - it took about 20-30 secs on a windows machine

[jira] [Resolved] (CTAKES-169) SectionSegmentAnnotator.java is in core, but the sample SectionSegmentAnnotator.xml descriptor is in ctakes-clinical-pipeline

2014-11-05 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-169?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-169. - Resolution: Fixed Assignee: Pei Chen SectionSegmentAnnotator.java is in core, but the sample

[jira] [Resolved] (CTAKES-285) cleartk-ml-liblinear needs to be added to the dependencies

2014-11-05 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-285?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-285. - Resolution: Fixed resolved during the clerk 2.0 upgrade. must be including it already as transitive

[jira] [Created] (CTAKES-325) Default pipeline to use dictionary-lookup-fast

2014-11-04 Thread Pei Chen (JIRA)
Pei Chen created CTAKES-325: --- Summary: Default pipeline to use dictionary-lookup-fast Key: CTAKES-325 URL: https://issues.apache.org/jira/browse/CTAKES-325 Project: cTAKES Issue Type: Improvement

[jira] [Created] (CTAKES-327) Make inner classes import explicit - if not, class names can be ambiguous and depend on compiler order.

2014-11-04 Thread Pei Chen (JIRA)
Pei Chen created CTAKES-327: --- Summary: Make inner classes import explicit - if not, class names can be ambiguous and depend on compiler order. Key: CTAKES-327 URL: https://issues.apache.org/jira/browse/CTAKES-327

[jira] [Resolved] (CTAKES-327) Make inner classes import explicit - if not, class names can be ambiguous and depend on compiler order.

2014-11-04 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-327?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-327. - Resolution: Fixed Completed: At revision: 1636645 Make inner classes import explicit - if not, class

[jira] [Commented] (CTAKES-321) Verify ctakes-ytex 3rd party dependencies

2014-11-04 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-321?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14197013#comment-14197013 ] Pei Chen commented on CTAKES-321: - jsr-305 is actually new BSD license now: No need to

[jira] [Resolved] (CTAKES-280) upgrade to cleartk-2.*

2014-11-04 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-280?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-280. - Resolution: Fixed fixed for 3.2.1 upgrade to cleartk-2.* -- Key:

[jira] [Resolved] (CTAKES-312) upgrade uimafit

2014-11-04 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-312?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-312. - Resolution: Fixed fixed for 3.2.1 upgrade uimafit --- Key: CTAKES-312

[jira] [Resolved] (CTAKES-324) Deploy 3.2.1 resources from SF to Maven Central/OSSonatype

2014-11-03 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-324?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen resolved CTAKES-324. - Resolution: Fixed resources deployed to 3.2.1 and available on maven central now.

[jira] [Created] (CTAKES-324) Deploy 3.2.1 resources from SF to Maven Central/OSSonatype

2014-10-31 Thread Pei Chen (JIRA)
Pei Chen created CTAKES-324: --- Summary: Deploy 3.2.1 resources from SF to Maven Central/OSSonatype Key: CTAKES-324 URL: https://issues.apache.org/jira/browse/CTAKES-324 Project: cTAKES Issue Type:

[jira] [Commented] (CTAKES-314) BigTop/Hadoop cTAKES integration

2014-10-22 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-314?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14180655#comment-14180655 ] Pei Chen commented on CTAKES-314: - package sparkapps import java.text.BreakIterator

[jira] [Updated] (CTAKES-321) Verify ctakes-ytex 3rd party dependencies

2014-10-16 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-321?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Pei Chen updated CTAKES-321: Attachment: Apache-cTAKES-Lib-License.xlsx Verify ctakes-ytex 3rd party dependencies

[jira] [Created] (CTAKES-321) Verify ctakes-ytex 3rd party dependencies

2014-10-15 Thread Pei Chen (JIRA)
Pei Chen created CTAKES-321: --- Summary: Verify ctakes-ytex 3rd party dependencies Key: CTAKES-321 URL: https://issues.apache.org/jira/browse/CTAKES-321 Project: cTAKES Issue Type: Bug

[jira] [Commented] (CTAKES-314) BigTop/Hadoop cTAKES integration

2014-10-13 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-314?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14169308#comment-14169308 ] Pei Chen commented on CTAKES-314: - UMLS Annotator requires: SentenceDetector, POSTagger,

[jira] [Commented] (CTAKES-314) BigTop/Hadoop cTAKES integration

2014-10-10 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-314?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14167393#comment-14167393 ] Pei Chen commented on CTAKES-314: - Sample API call taken from

[jira] [Commented] (CTAKES-314) BigTop/Hadoop cTAKES integration

2014-10-08 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-314?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14163545#comment-14163545 ] Pei Chen commented on CTAKES-314: - Jay, sorry for the delayed response. Yeah, to try

[jira] [Commented] (CTAKES-314) BigTop/Hadoop cTAKES integration

2014-10-02 Thread Pei Chen (JIRA)
[ https://issues.apache.org/jira/browse/CTAKES-314?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14156678#comment-14156678 ] Pei Chen commented on CTAKES-314: - thanks jay- attaching to this jura would be great!

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