[jira] [Updated] (RYA-182) Review SCM Tag in Parent POM

[Aaron Mihalik (JIRA)]

 [ 
https://issues.apache.org/jira/browse/RYA-182?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Aaron Mihalik updated RYA-182:
--
Assignee: Caleb Meier  (was: Aaron Mihalik)

> Review SCM Tag in Parent POM
> 
>
> Key: RYA-182
> URL: https://issues.apache.org/jira/browse/RYA-182
> Project: Rya
>  Issue Type: Task
>Reporter: Aaron Mihalik
>Assignee: Caleb Meier
>
> During the review of 3.2.10-RC1, Josh Noted:
> * v3.2.10-RC1 is incorrect in parent pom



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[GitHub] incubator-rya pull request #113: Rya 198

[amihalik]

GitHub user amihalik opened a pull request:

https://github.com/apache/incubator-rya/pull/113

Rya 198

## Description
Change package names to org.apache.

### Tests
Ran existing tests

### Links
[Jira](https://issues.apache.org/jira/browse/RYA-198)

### Checklist
- [ ] Code Review
- [ ] Squash Commits

 People To Reivew
@meiercaleb @dlotts @isper3at 

You can merge this pull request into a Git repository by running:

$ git pull https://github.com/amihalik/incubator-rya RYA-198

Alternatively you can review and apply these changes as the patch at:

https://github.com/apache/incubator-rya/pull/113.patch

To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:

This closes #113


commit a631407baf06de5bb198de1274e924213aa0361e
Author: Aaron Mihalik 
Date:   2016-10-13T14:44:43Z

RYA-202 Removed tinkerpop.rya

commit e541b71ab0513a263c028f12bd26b1fbf0b1aeed
Author: Aaron Mihalik 
Date:   2016-10-13T15:57:11Z

RYA-199 Upgrading to Apache Tinkerpop

Removed LGPL dependencies (including HEP Dependency)

Closes #111

commit 44a2dcf065286ad6b122121ff7d3bf462c60dc3e
Author: Aaron Mihalik 
Date:   2016-10-14T18:59:50Z

RYA-198 Renaming Files

commit 17bde6d85bceb163301f1f8dc6495ef2dbc8d6c4
Author: Aaron Mihalik 
Date:   2016-10-14T20:08:29Z

RYA-198 Fixing Source Files

commit 79ebd6b3ac6060fa8fec72a6af3a51826736b9da
Author: Aaron Mihalik 
Date:   2016-10-14T20:37:04Z

RYA-198 Fixing Other Files




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[GitHub] incubator-rya pull request #109: 3.2.10 rc1

[rac021]

GitHub user rac021 opened a pull request:

https://github.com/apache/incubator-rya/pull/109

3.2.10 rc1

HTTP ERROR 500

Problem accessing /web.rya/queryrdf. Reason:

Server Error
Caused by:

org.springframework.web.util.NestedServletException: Request processing 
failed; nested exception is java.lang.RuntimeException: 
java.lang.RuntimeException: org.apache.accumulo.core.client.AccumuloException: 
java.lang.InterruptedException: sleep interrupted
at 
org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:965)
at 
org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:844)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:687)
at 
org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:829)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
at 
org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:837)
at 
org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:583)
at 
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
at 
org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
at 
org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
at 
org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1180)
at 
org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:511)
at 
org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)
at 
org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1112)
at 
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
at 
org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:213)
at 
org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:119)
at 
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:134)
at org.eclipse.jetty.server.Server.handle(Server.java:524)
at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:319)
at 
org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:253)
at 
org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:273)
at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:95)
at 
org.eclipse.jetty.io.SelectChannelEndPoint$2.run(SelectChannelEndPoint.java:93)
at 
org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.executeProduceConsume(ExecuteProduceConsume.java:303)
at 
org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.produceConsume(ExecuteProduceConsume.java:148)
at 
org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.run(ExecuteProduceConsume.java:136)
at 
org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:671)
at 
org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:589)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.RuntimeException: java.lang.RuntimeException: 
org.apache.accumulo.core.client.AccumuloException: 
java.lang.InterruptedException: sleep interrupted
at mvm.cloud.rdf.web.sail.RdfController.queryRdf(RdfController.java:165)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at 
org.springframework.web.bind.annotation.support.HandlerMethodInvoker.invokeHandlerMethod(HandlerMethodInvoker.java:176)
at 
org.springframework.web.servlet.mvc.annotation.AnnotationMethodHandlerAdapter.invokeHandlerMethod(AnnotationMethodHandlerAdapter.java:440)
at 
org.springframework.web.servlet.mvc.annotation.AnnotationMethodHandlerAdapter.handle(AnnotationMethodHandlerAdapter.java:428)
at 
org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:933)
at 
org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:867)
at 
org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:953)
... 29 more
Caused by: java.lang.RuntimeException: 
org.apache.accumulo.core.client.AccumuloException: 
java.lang.InterruptedException: sleep interrupted
at 
org.apache.accumulo.core.client.impl.ScannerIterator.hasNext(ScannerIterator.java:187)
at com.google.common.collect.Iterators$5.hasNext(Iterators.java:547)
at 

[GitHub] incubator-rya pull request #110: Rya infra push

[rac021]

GitHub user rac021 opened a pull request:

https://github.com/apache/incubator-rya/pull/110

Rya infra push

Hi,

Does apache Rya supports Arbitrary length matching  ?

Thank's

You can merge this pull request into a Git repository by running:

$ git pull https://github.com/apache/incubator-rya RYA-INFRA-PUSH

Alternatively you can review and apply these changes as the patch at:

https://github.com/apache/incubator-rya/pull/110.patch

To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:

This closes #110


commit b98b54e8961de342e4731b4421fad429ae1d
Author: Aaron Mihalik 
Date:   2015-12-04T18:42:55Z

A Small Commit to wake up the Inrfa/github push

commit 5a03ef61abe6218997dbbcce870e57d8cef51bae
Author: Aaron Mihalik 
Date:   2015-12-07T12:02:38Z

Cannot delete temp branch, doc'd it.

commit 2aea6297f122d9e487066b658807270b17cbcd2c
Author: Aaron Mihalik 
Date:   2015-12-07T12:08:28Z

Edited Readme to wake-up mirror process

commit ef9819803cce267d087f9e4b2a28bbcf1c2e3443
Author: Aaron Mihalik 
Date:   2015-12-07T12:20:05Z

Edited Readme to wake-up mirror process

commit d52d58cef14df2e54ee3dda7629162c74ae9e243
Author: Aaron Mihalik 
Date:   2016-08-11T20:25:22Z

Edited Readme to wake-up mirror process

commit e93f0d0a8deb383404c92d78980f11b7a504f145
Author: Aaron Mihalik 
Date:   2016-08-11T22:44:31Z

Edited Readme to wake-up mirror process




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[jira] [Commented] (RYA-204) Rya Jena Sesame Adapter

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-204?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15575519#comment-15575519
 ] 

ASF GitHub Bot commented on RYA-204:


Github user ejwhite922 commented on the issue:

https://github.com/apache/incubator-rya/pull/106
  
The adapter code was based off an earlier version of Jena when it was still 
an incubator project.  Some of the packages were deprecated and didn't make it 
when Jena became a full Apache project.  I revived some of those packages and 
updated them to work with the latest Jena 3.1.0.  Any package with "legacy" in 
its name is a 3.1.0 compatible version of a deprecated package from the 
incubator Jena project.


> Rya Jena Sesame Adapter
> ---
>
> Key: RYA-204
> URL: https://issues.apache.org/jira/browse/RYA-204
> Project: Rya
>  Issue Type: New Feature
>Reporter: Eric White
>Assignee: Eric White
>
> Add the ability to use the Jena API over a Sesame repository.



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[GitHub] incubator-rya issue #106: RYA-204 Added the Rya Jena Sesame adapter which al...

[ejwhite922]

Github user ejwhite922 commented on the issue:

https://github.com/apache/incubator-rya/pull/106
  
The adapter code was based off an earlier version of Jena when it was still 
an incubator project.  Some of the packages were deprecated and didn't make it 
when Jena became a full Apache project.  I revived some of those packages and 
updated them to work with the latest Jena 3.1.0.  Any package with "legacy" in 
its name is a 3.1.0 compatible version of a deprecated package from the 
incubator Jena project.


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[jira] [Updated] (RYA-177) Review License on Rya Dependencies

[Aaron Mihalik (JIRA)]

 [ 
https://issues.apache.org/jira/browse/RYA-177?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Aaron Mihalik updated RYA-177:
--
Assignee: Caleb Meier  (was: Aaron Mihalik)

> Review License on Rya Dependencies
> --
>
> Key: RYA-177
> URL: https://issues.apache.org/jira/browse/RYA-177
> Project: Rya
>  Issue Type: Task
>Affects Versions: 3.2.10
>Reporter: Aaron Mihalik
>Assignee: Caleb Meier
>Priority: Blocker
> Fix For: 3.2.10
>
>
> * jgridshift:jgridshift appears to be LGPL licensed
> (https://github.com/floscher/jGridShift/blob/master/LICENSE). You may
> not use this software. It looks like it was not appropriately marked in
> its pom which is why the configuration from Rya's parent apache.pom did
> not catch it. This is brought in via org.geotools.xsd:gt-xsd-gml3.
> * colt (http://dst.lbl.gov/ACSSoftware/colt/) appears to be another
> brought in by com.tinkerpop.blueprints:blueprints-core
> * com.google.code.findbugs:jsr305 is another example of GPL licensing.
> While the artifact appears to have the ASL tagged on the pom, all
> Findbugs documentation states that the project is GPL.
> I would recommend to make a pass over your dependencies to verify that
> you aren't depending on any projects which are licensed with a license
> on this list: http://www.apache.org/legal/resolved.html#category-x. See
> http://www.apache.org/licenses/GPL-compatibility.html for more details.
> The above three examples were found via a brief glance.



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[jira] [Commented] (RYA-200) Remove findbugs:jsr305 Dependency

[Aaron Mihalik (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-200?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15575987#comment-15575987
 ] 

Aaron Mihalik commented on RYA-200:
---

I cannot find a repo for this artifact: 

com.github.stephenc.findbugs:findbugs-annotations:3.0.1-1

stephenc lists the Repositories here [1] but I can't find the latest release in 
those mentioned repos (i.e. here [2] or here [3])

I don't think we'll have this resolved for RC2, but I'm hoping that's okay 
because other projects depend on findbugs:jsr305 (i.e. hadoop and fluo).

--Aaron


[1] http://stephenc.github.io/findbugs-annotations/distribution-management.html
[2] 
https://oss.sonatype.org/content/repositories/releases/com/github/stephenc/findbugs/findbugs-annotations/
[3] 
https://repo.maven.apache.org/maven2/com/github/stephenc/findbugs/findbugs-annotations/


> Remove findbugs:jsr305 Dependency
> -
>
> Key: RYA-200
> URL: https://issues.apache.org/jira/browse/RYA-200
> Project: Rya
>  Issue Type: Task
>Reporter: Aaron Mihalik
>Assignee: Aaron Mihalik
>Priority: Blocker
>
> Per review notes from Josh:
> {quote}
> com.google.code.findbugs:jsr305 coming in via hadoop-common (yes, Hadoop
> screwed up) is also bad. This is an easy fix to exclude this dependency
> and add in com.github.stephenc.findbugs:findbugs-annotations instead.
> {quote}



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[jira] [Issue Comment Deleted] (RYA-199) Remove HEP Dependency

[Aaron Mihalik (JIRA)]

 [ 
https://issues.apache.org/jira/browse/RYA-199?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Aaron Mihalik updated RYA-199:
--
Comment: was deleted

(was: I cannot find a repo for this artifact: 

com.github.stephenc.findbugs:findbugs-annotations:3.0.1-1

stephenc lists the Repositories here [1] but I can't find the latest release in 
those mentioned repos (i.e. here [2] or here [3])

I don't think we'll have this resolved for RC2, but I'm hoping that's okay 
because other projects depend on findbugs:jsr305 (i.e. hadoop and fluo).

--Aaron


[1] http://stephenc.github.io/findbugs-annotations/distribution-management.html
[2] 
https://oss.sonatype.org/content/repositories/releases/com/github/stephenc/findbugs/findbugs-annotations/
[3] 
https://repo.maven.apache.org/maven2/com/github/stephenc/findbugs/findbugs-annotations/
)

> Remove HEP Dependency
> -
>
> Key: RYA-199
> URL: https://issues.apache.org/jira/browse/RYA-199
> Project: Rya
>  Issue Type: Task
>Reporter: Aaron Mihalik
>Assignee: Aaron Mihalik
>Priority: Blocker
>
> As noted by Josh during a review:
> {quote}
> I took a glance at another JAR that a `mvn package` creates this time:
> extras/indexing/target/rya.indexing-3.2.10-SNAPSHOT-accumulo-server.jar
> In here, I found: hep/aida/bin/AbstractBin.class
> Per https://dst.lbl.gov/ACSSoftware/colt/license.html, code in the
> hep/aida package are licensed as LGPL.
> It's really important to understand *all* of the dependencies that
> you're using when you're creating these massive shaded jars...
> ./extras/rya.merger/target/rya.merger-3.2.10-SNAPSHOT-shaded.jar also
> has the same issue. It appears like it is coming in via tinkerpop-blueprints
> [INFO] +- org.apache.rya:rya.sail:jar:3.2.10-SNAPSHOT:compile
> [INFO] |  +- com.tinkerpop.blueprints:blueprints-core:jar:2.5.0:compile
> [INFO] |  |  \- colt:colt:jar:1.2.0:compile
> [INFO] |  | \- concurrent:concurrent:jar:1.3.4:compile
> {quote}



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[GitHub] incubator-rya pull request #111: Rya 180

[amihalik]

GitHub user amihalik opened a pull request:

https://github.com/apache/incubator-rya/pull/111

Rya 180

## Description
Upgraded to Apache Tinkerpop and Removed tinkerpop.rya in order to remove 
LGPL dependencies (including HEP Dependency)

### Tests
Ran current tests

### Links
[Jira Upgrade Tinkerpop](https://issues.apache.org/jira/browse/RYA-199)
[Jira Remove Tinkerpop](https://issues.apache.org/jira/browse/RYA-202)

Checklist
- [ ] Code Review
- [ ] Squash Commits

 People To Reivew
@meiercaleb @dlotts

You can merge this pull request into a Git repository by running:

$ git pull https://github.com/amihalik/incubator-rya RYA-180

Alternatively you can review and apply these changes as the patch at:

https://github.com/apache/incubator-rya/pull/111.patch

To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:

This closes #111


commit b57a26f997ea736beeac055d8af20a3650051e54
Author: Aaron Mihalik 
Date:   2016-10-13T14:44:43Z

RYA-202 Removed tinkerpop.rya

commit 7f535e2ffcf2d3ac0a4025d3dc0ec9932dea1f36
Author: Aaron Mihalik 
Date:   2016-10-13T15:57:11Z

RYA-199 Upgrading to Apache Tinkerpop

Removed LGPL dependencies (including HEP Dependency)




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[GitHub] incubator-rya issue #107: RYA-178-Remove Rat Exclusions for OWL Files

[amihalik]

Github user amihalik commented on the issue:

https://github.com/apache/incubator-rya/pull/107
  
delete `sail/src/test/resources/univ-bench.owl` completely.  It appears 
that we don't use it in any tests.


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[jira] [Assigned] (RYA-198) Change package names to org.apache.

[Aaron Mihalik (JIRA)]

 [ 
https://issues.apache.org/jira/browse/RYA-198?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Aaron Mihalik reassigned RYA-198:
-

Assignee: Aaron Mihalik

> Change package names to org.apache.
> 
>
> Key: RYA-198
> URL: https://issues.apache.org/jira/browse/RYA-198
> Project: Rya
>  Issue Type: Task
>Reporter: Aaron Mihalik
>Assignee: Aaron Mihalik
>




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[GitHub] incubator-rya pull request #105: RYA-188 Add disclaimer file

[asfgit]

Github user asfgit closed the pull request at:

https://github.com/apache/incubator-rya/pull/105


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incubator-rya-master-with-optionals - Build # 5 - Still unstable

[Apache Jenkins Server]

The Apache Jenkins build system has built incubator-rya-master-with-optionals 
(build #5)

Status: Still unstable

Check console output at 
https://builds.apache.org/job/incubator-rya-master-with-optionals/5/ to view 
the results.