> make a (real) minimal example and we'll see what can be done
> 

Here it is:

\startbuffer[test]
<body>
  <p>In this paragraph<footnote>first footnote</footnote><endnote>endnote 
strictly
  following a footnote (no other XML nodes between them)</endnote>
  a footnote marker and an endnote marker are at the same point in the text;
  in the XML source, their elements are contiguous, with nothing in between.
  The CSS selector <code>footnote + endnote</code> works right, and the setup
  associated to that selector puts a comma between their markers to
  separate them in the typesetting.</p>

  <p>In this paragraph<footnote>second footnote</footnote> they don't occur at 
the
  same point in the text<endnote>endnote comes after footnote: there's some
  text between them, but no XML elements</endnote>;
  for the CSS selector <code>footnote + endnote</code> it's the same case of 
the previous paragraph,
  because there's no other XML element between the <code>footnote</code> and the
  <code>endnote</code> elements: that's why you still see a comma before
  the endnote's marker, but this time it's not what I want.</p>

  <p>In this paragraph<footnote>third footnote</footnote> they don't occur at 
the
  same point in the text, and the CSS selector <code>footnote + endnote</code>
  does not match<endnote>endnote comes after footnote, but there are 3 nodes
  between them: a text, a <code>code</code> element, another text</endnote>,
  because there's a <code>code</code> element between <code>footnote</code>
  and <code>endnote</code> elements.</p>

  <p>CSS has no operator to discriminate between the first two cases.</p>
</body>
\stopbuffer

\setupnotation[footnote][numberconversion=a]
\setupwhitespace[line]

\startxmlsetups xml:notesetups
  \xmlsetsetup{#1}{body|p|footnote|code}{xml:*}
  \xmlsetsetup{#1}{{endnote}}{xml:endnote}
  \xmlsetsetup{#1}{{footnote + endnote}}{xml:endnote-after-footnote}
\stopxmlsetups

\xmlregistersetup{xml:notesetups}

\startxmlsetups xml:body
  \xmlflush{#1}
\stopxmlsetups

\startxmlsetups xml:p
  \xmlflush{#1}\par
\stopxmlsetups

\startxmlsetups xml:footnote
  \footnote{\xmlflush{#1}}
\stopxmlsetups

\startxmlsetups xml:code
  {\tt\xmlflush{#1}}
\stopxmlsetups

\startxmlsetups xml:endnote
  \endnote{\xmlflush{#1}}
\stopxmlsetups

\startxmlsetups xml:endnote-after-footnote
  \high{,}\endnote{\xmlflush{#1}}
\stopxmlsetups

\starttext
  \xmlprocessbuffer{main}{test}{}
  \page
  \placenotes[endnote]
\stoptext
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