Charles,
That should be fixed in r6087. In your example, the last statement
outputs False instead of raising an exception.
Note the deprecation warning: instead of fill_value, you want to use
masked_equal to decide whether missing values should be considered
True or False.
Let me know how it
The following shows a bug in numpy.ma.allclose:
import numpy
import numpy.ma
a = numpy.arange(100)
b=numpy.reshape(a,(10,10))
print b
c=numpy.ma.masked_greater(b,98)
print c.count()
numpy.ma.allclose(b,1)
numpy.ma.allclose(c,1)
Since c is masked it fails
I think it should pass returning