[Numpy-discussion] ANN: scipy 0.10 release candidate 1

2011-11-05 Thread Ralf Gommers
Armstrong + * Matthew Brett * Lars Buitinck + * David Cournapeau * FI$H 2000 + * Michael McNeil Forbes + * Matty G + * Christoph Gohlke * Ralf Gommers * Yaroslav Halchenko * Charles Harris * Thouis (Ray) Jones + * Chris Jordan-Squire + * Robert Kern * Chris Lasher + * Wes McKinney + * Travis Oliphant

[Numpy-discussion] ANN: SciPy 0.10.0 released

2011-11-13 Thread Ralf Gommers
Buitinck + * David Cournapeau * FI$H 2000 + * Michael McNeil Forbes + * Matty G + * Christoph Gohlke * Ralf Gommers * Yaroslav Halchenko * Charles Harris * Thouis (Ray) Jones + * Chris Jordan-Squire + * Robert Kern * Chris Lasher + * Wes McKinney + * Travis Oliphant * Fabian Pedregosa * Josef Perktold

Re: [Numpy-discussion] ANN: SciPy 0.10.0 released

2011-11-14 Thread Ralf Gommers
On Mon, Nov 14, 2011 at 3:04 PM, Jean-Baptiste Marquette marqu...@iap.frwrote: Le 13 nov. 2011 à 20:19, Ralf Gommers a écrit : I am pleased to announce the availability of SciPy 0.10.0. Hi all, Thanks for this great job. I've run nosetests on my Mac (64-bit 10.7.2 build on EPD) which

Re: [Numpy-discussion] scipy.org still says source in some subversion repo -- should be git !?

2011-11-28 Thread Ralf Gommers
On Fri, Nov 25, 2011 at 7:20 PM, Sebastian Haase seb.ha...@gmail.comwrote: google search for: numpy browse source points here: http://new.scipy.org/download.html which talks about: svn co http://svn.scipy.org/svn/numpy/trunk numpy The problem is that new.scipy.org duplicates content

[Numpy-discussion] numpy 1.7.0 release?

2011-12-05 Thread Ralf Gommers
Hi all, It's been a little over 6 months since the release of 1.6.0 and the NA debate has quieted down, so I'd like to ask your opinion on the timing of 1.7.0. It looks to me like we have a healthy amount of bug fixes and small improvements, plus three larger chucks of work: - datetime - NA -

Re: [Numpy-discussion] numpy 1.7.0 release?

2011-12-05 Thread Ralf Gommers
On Mon, Dec 5, 2011 at 9:13 PM, Charles R Harris charlesr.har...@gmail.comwrote: On Mon, Dec 5, 2011 at 1:08 PM, Travis Oliphant oliph...@enthought.comwrote: I like the idea. Is there resolution to the NA question? No, people still disagree and are likely to do so for years to come with

Re: [Numpy-discussion] numpy 1.7.0 release?

2011-12-06 Thread Ralf Gommers
On Mon, Dec 5, 2011 at 8:43 PM, Ralf Gommers ralf.gomm...@googlemail.comwrote: Hi all, It's been a little over 6 months since the release of 1.6.0 and the NA debate has quieted down, so I'd like to ask your opinion on the timing of 1.7.0. It looks to me like we have a healthy amount of bug

Re: [Numpy-discussion] numpy 1.7.0 release?

2011-12-08 Thread Ralf Gommers
On Wed, Dec 7, 2011 at 8:45 PM, Bruce Southey bsout...@gmail.com wrote: On Tue, Dec 6, 2011 at 4:13 PM, Wes McKinney wesmck...@gmail.com wrote: On Tue, Dec 6, 2011 at 4:11 PM, Ralf Gommers ralf.gomm...@googlemail.com wrote: On Mon, Dec 5, 2011 at 8:43 PM, Ralf Gommers ralf.gomm

Re: [Numpy-discussion] trouble building numpy 1.6.1 on Scientific Linux 5

2011-12-11 Thread Ralf Gommers
On Fri, Dec 9, 2011 at 8:02 PM, Russell E. Owen ro...@uw.edu wrote: I'm trying to build numpy 1.6.1 on Scientific Linux 5 but the unit tests claim the wrong version of fortran was used. I thought I knew how to avoid that, but it's not working. I don't have atlas (this needs to run on a lot

Re: [Numpy-discussion] Fast Reading of ASCII files

2011-12-11 Thread Ralf Gommers
On Wed, Dec 7, 2011 at 7:50 PM, Chris.Barker chris.bar...@noaa.gov wrote: Hi folks, This is a continuation of a conversation already started, but i gave it a new, more appropriate, thread and subject. On 12/6/11 2:13 PM, Wes McKinney wrote: we should start talking about building a *high

Re: [Numpy-discussion] Moving to gcc 4.* for win32 installers ?

2011-12-13 Thread Ralf Gommers
On Sun, Oct 30, 2011 at 12:18 PM, David Cournapeau courn...@gmail.comwrote: On Thu, Oct 27, 2011 at 5:19 PM, Ralf Gommers ralf.gomm...@googlemail.com wrote: Hi David, On Thu, Oct 27, 2011 at 3:02 PM, David Cournapeau courn...@gmail.com wrote: Hi, I was wondering if we could

Re: [Numpy-discussion] Fast Reading of ASCII files

2011-12-13 Thread Ralf Gommers
On Tue, Dec 13, 2011 at 10:07 PM, Chris Barker chris.bar...@noaa.govwrote: On Tue, Dec 13, 2011 at 11:29 AM, Bruce Southey bsout...@gmail.comwrote: ** Reading data is hard and writing code that suits the diversity in the Numerical Python community is even harder! yup Both loadtxt and

Re: [Numpy-discussion] Fast Reading of ASCII files

2011-12-14 Thread Ralf Gommers
On Wed, Dec 14, 2011 at 4:11 PM, Bruce Southey bsout...@gmail.com wrote: ** On 12/14/2011 01:03 AM, Chris Barker wrote: On Tue, Dec 13, 2011 at 1:21 PM, Ralf Gommers ralf.gomm...@googlemail.com wrote: genfromtxt sure looks close for an API This I don't agree with. It has a huge

Re: [Numpy-discussion] Fast Reading of ASCII files

2011-12-14 Thread Ralf Gommers
On Wed, Dec 14, 2011 at 9:54 PM, Chris Barker chris.bar...@noaa.gov wrote: On Wed, Dec 14, 2011 at 11:36 AM, Benjamin Root ben.r...@ou.edu wrote: well, yes, though it does do a lot -- do you have a smpler one in mind? Just looking at what I normally wouldn't need for simple data files

Re: [Numpy-discussion] scipy installation problem

2011-12-14 Thread Ralf Gommers
On Wed, Dec 14, 2011 at 10:38 PM, Alex Ter-Sarkissov ater1...@gmail.comwrote: I'm using Eclipse (PyDev) on MacOS. I downloaded scipy010, installed it and added path to .mpkg file to PYTHONPATH and scipy to forced built-in. Nothing worked, I keep getting 'module scipy not found'. I then removed

Re: [Numpy-discussion] scipy installation problem

2011-12-14 Thread Ralf Gommers
On Wed, Dec 14, 2011 at 10:56 PM, Alex Ter-Sarkissov ater1...@gmail.comwrote: yes, that's exactly what i did. I'm using Python2.6 both in PyDev and Scipy. Then you don't need to put anything on your pythonpath, since scipy gets installed to the normal site-packages dir. You'll have to

Re: [Numpy-discussion] scipy installation problem

2011-12-14 Thread Ralf Gommers
On Wed, Dec 14, 2011 at 11:12 PM, Alex Ter-Sarkissov ater1...@gmail.comwrote: yeah, I've already removed it, still doesn't work. I'm running Python 2.6 and SciPy version I'm trying to install is scipy-0.10.0-py2.6-python.org-macosx10.3., pydev version is 2.2.4 I've had no trouble running

Re: [Numpy-discussion] Problem installing NumPy with Python 3.2.2/MacOS X 10.7.2

2011-12-17 Thread Ralf Gommers
On Sat, Dec 17, 2011 at 1:21 AM, Charles R Harris charlesr.har...@gmail.com wrote: On Fri, Dec 16, 2011 at 4:07 PM, McNicol, Adam amcni...@longroad.ac.ukwrote: ** Hi There, I am very new to numpy and have really only started investigating it as one of my students needs some

Re: [Numpy-discussion] Problem installing NumPy with Python 3.2.2/MacOS X 10.7.2

2011-12-18 Thread Ralf Gommers
On Sat, Dec 17, 2011 at 12:59 PM, McNicol, Adam amcni...@longroad.ac.ukwrote: ** Hi There, Thanks for the responses. At this point I would settle from just being able to install matplotlib. Even if some of the functionality isn't present currently that is fine. I'm afraid my knowledge

Re: [Numpy-discussion] Problem installing NumPy with Python 3.2.2/MacOS X 10.7.2

2011-12-18 Thread Ralf Gommers
: Cannot compile 'Python.h'. Perhaps you need to install python-dev|python-devel. Message: 3 Date: Sun, 18 Dec 2011 09:49:00 +0100 From: Ralf Gommers ralf.gomm...@googlemail.com Subject: Re: [Numpy-discussion] Problem installing NumPy with Python 3.2.2/MacOS X 10.7.2 To: Discussion

Re: [Numpy-discussion] numpy 1.7.0 release?

2011-12-20 Thread Ralf Gommers
On Tue, Dec 20, 2011 at 3:18 PM, Charles R Harris charlesr.har...@gmail.com wrote: Hi Ralf, On Mon, Dec 5, 2011 at 12:43 PM, Ralf Gommers ralf.gomm...@googlemail.com wrote: Hi all, It's been a little over 6 months since the release of 1.6.0 and the NA debate has quieted down, so I'd

Re: [Numpy-discussion] trouble building numpy 1.6.1 on Scientific Linux 5

2011-12-20 Thread Ralf Gommers
On Tue, Dec 20, 2011 at 10:52 PM, Russell E. Owen ro...@uw.edu wrote: In article rowen-74bafa.11292712122...@news.gmane.org, Russell E. Owen ro...@uw.edu wrote: In article cabl7cqjezmtswcupj0kgfjz4xc4arrwn24bi3svzjwcc2t9...@mail.gmail.com, Ralf Gommers ralf.gomm...@googlemail.com wrote

Re: [Numpy-discussion] Indexing empty dimensions with empty arrays

2011-12-26 Thread Ralf Gommers
2011/12/25 Jordi Gutiérrez Hermoso jord...@octave.org I have been instructed to bring this issue to the mailing list: http://projects.scipy.org/numpy/ticket/1994 The issue is this corner case: idx = [] x = np.array([]) x[idx] #works array([], dtype=float64) x[:, idx] #works

Re: [Numpy-discussion] Indexing empty dimensions with empty arrays

2011-12-26 Thread Ralf Gommers
On Mon, Dec 26, 2011 at 8:50 PM, josef.p...@gmail.com wrote: On Mon, Dec 26, 2011 at 1:51 PM, Ralf Gommers ralf.gomm...@googlemail.com wrote: 2011/12/25 Jordi Gutiérrez Hermoso jord...@octave.org I have been instructed to bring this issue to the mailing list: http

Re: [Numpy-discussion] Indexing empty dimensions with empty arrays

2011-12-28 Thread Ralf Gommers
2011/12/27 Jordi Gutiérrez Hermoso jord...@octave.org On 26 December 2011 14:56, Ralf Gommers ralf.gomm...@googlemail.com wrote: On Mon, Dec 26, 2011 at 8:50 PM, josef.p...@gmail.com wrote: I have a hard time thinking through empty 2-dim arrays, and don't know what rules should apply

Re: [Numpy-discussion] trouble building numpy 1.6.1 on Scientific Linux 5

2011-12-28 Thread Ralf Gommers
On Wed, Dec 21, 2011 at 10:05 PM, Russell E. Owen ro...@uw.edu wrote: In article CABL7CQi_jQZgHa5rL8aSsb_PEmAPTNXyUyQutgQtz=_ljux...@mail.gmail.com, Ralf Gommers ralf.gomm...@googlemail.com wrote: On Tue, Dec 20, 2011 at 10:52 PM, Russell E. Owen ro...@uw.edu wrote: In article rowen

Re: [Numpy-discussion] Indexing empty dimensions with empty arrays

2011-12-28 Thread Ralf Gommers
On Wed, Dec 28, 2011 at 1:57 PM, Dag Sverre Seljebotn d.s.seljeb...@astro.uio.no wrote: On 12/28/2011 01:52 PM, Dag Sverre Seljebotn wrote: On 12/28/2011 09:33 AM, Ralf Gommers wrote: 2011/12/27 Jordi Gutiérrez Hermosojord...@octave.org mailto:jord...@octave.org On 26

[Numpy-discussion] dtype related deprecations

2011-12-28 Thread Ralf Gommers
Hi, I'm having some trouble cleaning up tests to deal with these two deprecations: DeprecationWarning: Setting NumPy dtype names is deprecated, the dtype will become immutable in a future version DeprecationWarning: DType strings 'O4' and 'O8' are deprecated because they are platform specific.

Re: [Numpy-discussion] Indexing empty dimensions with empty arrays

2011-12-28 Thread Ralf Gommers
On Wed, Dec 28, 2011 at 2:45 PM, Dag Sverre Seljebotn d.s.seljeb...@astro.uio.no wrote: On 12/28/2011 02:21 PM, Ralf Gommers wrote: On Wed, Dec 28, 2011 at 1:57 PM, Dag Sverre Seljebotn d.s.seljeb...@astro.uio.no mailto:d.s.seljeb...@astro.uio.no wrote: On 12/28/2011 01:52 PM

Re: [Numpy-discussion] How's our broadcasting?

2011-12-28 Thread Ralf Gommers
2011/12/28 Jordi Gutiérrez Hermoso jord...@octave.org Just FYI, the next stable release of Octave (3.6) will have broadcasting. I used Numpy as an inspiration. Here is the WIP manual for it: http://jordi.platinum.linux.pl/octave.html/Broadcasting.html#Broadcasting That looks good. Should

Re: [Numpy-discussion] GSOC

2011-12-29 Thread Ralf Gommers
On Thu, Dec 29, 2011 at 9:50 PM, Charles R Harris charlesr.har...@gmail.com wrote: Hi All, I thought I'd raise this topic just to get some ideas out there. At the moment I see two areas that I'd like to see addressed. 1. Documentation editor. This would involve looking at the generated

Re: [Numpy-discussion] Numpy performance testing

2011-12-31 Thread Ralf Gommers
On Fri, Dec 30, 2011 at 5:45 AM, jason-s...@creativetrax.com wrote: On 12/29/11 10:37 PM, Jaidev Deshpande wrote: Hi! Along with test coverage, have any of you considered any systematic monitoring of NumPy performance? I'm mildly obsessed with performance and benchmarking of NumPy. I

Re: [Numpy-discussion] GSOC

2012-01-02 Thread Ralf Gommers
On Sat, Dec 31, 2011 at 6:43 AM, Jaidev Deshpande deshpande.jai...@gmail.com wrote: Hi Chris Documentation is specificsly excluded from GSoC (at least it was a couple years ago when I last was involved) Documentation wasn't excluded last year from GSoC, there were quite a few projects

Re: [Numpy-discussion] numpy 1.7.0 release?

2012-01-06 Thread Ralf Gommers
On Tue, Dec 20, 2011 at 9:28 PM, Ralf Gommers ralf.gomm...@googlemail.comwrote: On Tue, Dec 20, 2011 at 3:18 PM, Charles R Harris charlesr.har...@gmail.com wrote: Hi Ralf, On Mon, Dec 5, 2011 at 12:43 PM, Ralf Gommers ralf.gomm...@googlemail.com wrote: Hi all, It's been a little

Re: [Numpy-discussion] numpy 1.7.0 release?

2012-01-07 Thread Ralf Gommers
On Sat, Jan 7, 2012 at 2:45 AM, Bruce Southey bsout...@gmail.com wrote: On Fri, Jan 6, 2012 at 9:15 AM, Ralf Gommers ralf.gomm...@googlemail.com wrote: On Tue, Dec 20, 2011 at 9:28 PM, Ralf Gommers ralf.gomm...@googlemail.com wrote: On Tue, Dec 20, 2011 at 3:18 PM, Charles R

Re: [Numpy-discussion] Heads up and macro deprecation.

2012-02-02 Thread Ralf Gommers
On Thu, Feb 2, 2012 at 6:36 PM, Charles R Harris charlesr.har...@gmail.comwrote: On Thu, Feb 2, 2012 at 9:58 AM, Bruce Southey bsout...@gmail.com wrote: On 02/01/2012 02:53 PM, Charles R Harris wrote: Hi All, Two things here. 1) Some macros for threading and the iterator now require a

Re: [Numpy-discussion] Moving to gcc 4.* for win32 installers ?

2012-02-04 Thread Ralf Gommers
On Wed, Dec 14, 2011 at 6:50 PM, Ralf Gommers ralf.gomm...@googlemail.comwrote: On Wed, Dec 14, 2011 at 3:04 PM, David Cournapeau courn...@gmail.comwrote: On Tue, Dec 13, 2011 at 3:43 PM, Ralf Gommers ralf.gomm...@googlemail.com wrote: On Sun, Oct 30, 2011 at 12:18 PM, David Cournapeau

Re: [Numpy-discussion] dtype related deprecations

2012-02-04 Thread Ralf Gommers
On Wed, Dec 28, 2011 at 2:58 PM, Ralf Gommers ralf.gomm...@googlemail.comwrote: Hi, I'm having some trouble cleaning up tests to deal with these two deprecations: DeprecationWarning: Setting NumPy dtype names is deprecated, the dtype will become immutable in a future version

Re: [Numpy-discussion] autocorrelation computation performance : use of np.correlate

2012-02-04 Thread Ralf Gommers
On Thu, Feb 2, 2012 at 1:58 AM, josef.p...@gmail.com wrote: On Wed, Feb 1, 2012 at 6:48 PM, Benjamin Root ben.r...@ou.edu wrote: On Wednesday, February 1, 2012, Pierre Haessig pierre.haes...@crans.org wrote: Hi, [I'm not sure whether this discussion belongs to numpy-discussion or

Re: [Numpy-discussion] On making Numpy 1.7 a long term support release.

2012-02-04 Thread Ralf Gommers
On Sun, Feb 5, 2012 at 7:33 AM, Travis Oliphant tra...@continuum.io wrote: I think supporting Python 2.5 and above is completely fine. I'd even be in favor of bumping up to Python 2.6 for NumPy 1.7 and certainly for NumPy 2.8 +1 for dropping Python 2.5 support also for an LTS release. That

Re: [Numpy-discussion] dtype related deprecations

2012-02-04 Thread Ralf Gommers
On Sun, Feb 5, 2012 at 12:24 AM, Mark Wiebe mwwi...@gmail.com wrote: On Sat, Feb 4, 2012 at 8:07 AM, Ralf Gommers ralf.gomm...@googlemail.comwrote: On Wed, Dec 28, 2011 at 2:58 PM, Ralf Gommers ralf.gomm...@googlemail.com wrote: Hi, I'm having some trouble cleaning up tests to deal

Re: [Numpy-discussion] Download page still points to SVN

2012-02-05 Thread Ralf Gommers
On Fri, Jan 20, 2012 at 12:53 PM, David Verelst david.vere...@gmail.comwrote: I would like to assist on the website. Although I have not made any code contributions to Numpy/SciPy (yet), I do follow the mailing lists and try to keep up to date on the scientific python scene. However, I need

Re: [Numpy-discussion] GSOC

2012-02-05 Thread Ralf Gommers
On Sun, Jan 15, 2012 at 3:02 AM, Charles R Harris charlesr.har...@gmail.com wrote: On Thu, Dec 29, 2011 at 2:36 PM, Ralf Gommers ralf.gomm...@googlemail.com wrote: On Thu, Dec 29, 2011 at 9:50 PM, Charles R Harris charlesr.har...@gmail.com wrote: Hi All, I thought I'd raise

Re: [Numpy-discussion] Moving to gcc 4.* for win32 installers ?

2012-02-07 Thread Ralf Gommers
On Tue, Feb 7, 2012 at 2:23 PM, Sturla Molden stu...@molden.no wrote: On 04.02.2012 16:55, Ralf Gommers wrote: Although not ideal, I don't have a problem with that in principle. However, wouldn't it break installing without admin rights if Python is installed by the admin

Re: [Numpy-discussion] On making Numpy 1.7 a long term support release.

2012-02-10 Thread Ralf Gommers
On Fri, Feb 10, 2012 at 10:25 AM, David Cournapeau courn...@gmail.comwrote: On Sun, Feb 5, 2012 at 7:19 AM, Ralf Gommers ralf.gomm...@googlemail.com wrote: On Sun, Feb 5, 2012 at 7:33 AM, Travis Oliphant tra...@continuum.io wrote: I think supporting Python 2.5 and above is completely

Re: [Numpy-discussion] On making Numpy 1.7 a long term support release.

2012-02-11 Thread Ralf Gommers
On Fri, Feb 10, 2012 at 8:51 PM, Ralf Gommers ralf.gomm...@googlemail.comwrote: On Fri, Feb 10, 2012 at 10:25 AM, David Cournapeau courn...@gmail.comwrote: On Sun, Feb 5, 2012 at 7:19 AM, Ralf Gommers ralf.gomm...@googlemail.com wrote: On Sun, Feb 5, 2012 at 7:33 AM, Travis Oliphant

Re: [Numpy-discussion] On making Numpy 1.7 a long term support release.

2012-02-11 Thread Ralf Gommers
On Sat, Feb 11, 2012 at 12:05 PM, David Cournapeau courn...@gmail.comwrote: On Sat, Feb 11, 2012 at 9:08 AM, Ralf Gommers ralf.gomm...@googlemail.com wrote: On Fri, Feb 10, 2012 at 8:51 PM, Ralf Gommers ralf.gomm...@googlemail.com wrote: On Fri, Feb 10, 2012 at 10:25 AM, David

Re: [Numpy-discussion] On making Numpy 1.7 a long term support release.

2012-02-11 Thread Ralf Gommers
On Sat, Feb 11, 2012 at 4:08 PM, David Cournapeau courn...@gmail.comwrote: On Sat, Feb 11, 2012 at 1:30 PM, Ralf Gommers ralf.gomm...@googlemail.com wrote: As Bruce said, 29 Feb 2012 and not 2014: https://access.redhat.com/support/policy/updates/errata/ I think Bruce and me were

Re: [Numpy-discussion] Commit rights to NumPy for Francesc Alted

2012-02-11 Thread Ralf Gommers
On Sat, Feb 11, 2012 at 11:06 PM, Fernando Perez fperez@gmail.comwrote: On Sat, Feb 11, 2012 at 11:11 AM, Travis Oliphant tra...@continuum.io wrote: I propose to give Francesc Alted commit rights to the NumPy project. +1. I'm only surprised he didn't have them already, given how much

Re: [Numpy-discussion] On making Numpy 1.7 a long term support release.

2012-02-11 Thread Ralf Gommers
that delay it. But, that is my best guess at the moment. Best, -Travis On Feb 10, 2012, at 3:25 AM, David Cournapeau wrote: On Sun, Feb 5, 2012 at 7:19 AM, Ralf Gommers ralf.gomm...@googlemail.com wrote: On Sun, Feb 5, 2012 at 7:33 AM, Travis Oliphant tra...@continuum.io wrote

Re: [Numpy-discussion] Issue Tracking

2012-02-13 Thread Ralf Gommers
On Mon, Feb 13, 2012 at 12:12 AM, Travis Oliphant tra...@continuum.iowrote: I'm wondering about using one of these commercial issue tracking plans for NumPy and would like thoughts and comments.Both of these plans allow Open Source projects to have unlimited plans for free. Free usage of

[Numpy-discussion] Release management (was: Updated differences between 1.5.1 to 1.6.1)

2012-02-14 Thread Ralf Gommers
On Tue, Feb 14, 2012 at 7:25 PM, Travis Oliphant tra...@continuum.iowrote: On Feb 14, 2012, at 3:32 AM, David Cournapeau wrote: Hi Travis, It is great that some resources can be spent to have people paid to work on NumPy. Thank you for making that happen. I am slightly confused

Re: [Numpy-discussion] Migrating issues to GitHub

2012-02-16 Thread Ralf Gommers
On Wed, Feb 15, 2012 at 12:11 PM, Thouis (Ray) Jones tho...@gmail.comwrote: On Sat, Feb 11, 2012 at 21:54, Fernando Perez fperez@gmail.com wrote: On Sat, Feb 11, 2012 at 12:36 PM, Pauli Virtanen p...@iki.fi wrote: The lack of attachments is the main problem with this transition. It's

[Numpy-discussion] test errors on deprecation/runtime warnings

2012-02-16 Thread Ralf Gommers
Hi, Last week we merged https://github.com/numpy/numpy/pull/201, which causes DeprecationWarning's and RuntimeWarning's to be converted to errors if they occur when running the test suite. The purpose of that is to make sure that code that still uses other deprecated code (or code that for some

Re: [Numpy-discussion] Numpy governance update

2012-02-16 Thread Ralf Gommers
On Thu, Feb 16, 2012 at 8:03 PM, Matthew Brett matthew.br...@gmail.comwrote: Hi, On Thu, Feb 16, 2012 at 4:23 AM, Francesc Alted franc...@continuum.io wrote: On Feb 16, 2012, at 12:15 PM, Jason Grout wrote: On 2/15/12 6:27 PM, Dag Sverre Seljebotn wrote: But in the very end, when

Re: [Numpy-discussion] Migrating issues to GitHub

2012-02-16 Thread Ralf Gommers
On Thu, Feb 16, 2012 at 10:20 PM, Thouis (Ray) Jones tho...@gmail.comwrote: On Thu, Feb 16, 2012 at 19:25, Ralf Gommers ralf.gomm...@googlemail.com wrote: In another thread Jira was proposed as an alternative to Trac. Can you point out some of its strengths and weaknesses, and tell us why

Re: [Numpy-discussion] Proposed Roadmap Overview

2012-02-17 Thread Ralf Gommers
On Fri, Feb 17, 2012 at 8:31 PM, Mark Wiebe mwwi...@gmail.com wrote: On Fri, Feb 17, 2012 at 11:00 AM, Christopher Jordan-Squire cjord...@uw.edu wrote: On Fri, Feb 17, 2012 at 10:21 AM, Mark Wiebe mwwi...@gmail.com wrote: On Fri, Feb 17, 2012 at 11:52 AM, Eric Firing efir...@hawaii.edu

Re: [Numpy-discussion] Proposed Roadmap Overview

2012-02-17 Thread Ralf Gommers
Hi Bryan, On Fri, Feb 17, 2012 at 6:02 PM, Bryan Van de Ven bry...@continuum.iowrote: On 2/17/12 10:27 AM, David Cournapeau wrote: Making the numpy C code buildable by a C++ compiler is harder than removing keywords. Just as a data point, I took the cpp branch mark started and got numpy

Re: [Numpy-discussion] Proposed Roadmap Overview

2012-02-17 Thread Ralf Gommers
On Fri, Feb 17, 2012 at 12:24 AM, Charles R Harris charlesr.har...@gmail.com wrote: On Thu, Feb 16, 2012 at 4:20 PM, josef.p...@gmail.com wrote: On Thu, Feb 16, 2012 at 5:56 PM, Warren Weckesser warren.weckes...@enthought.com wrote: On Thu, Feb 16, 2012 at 4:39 PM, Travis Oliphant

Re: [Numpy-discussion] Proposed Roadmap Overview

2012-02-17 Thread Ralf Gommers
On Fri, Feb 17, 2012 at 9:56 PM, Mark Wiebe mwwi...@gmail.com wrote: On Fri, Feb 17, 2012 at 12:49 PM, Ralf Gommers ralf.gomm...@googlemail.com wrote: On Fri, Feb 17, 2012 at 12:24 AM, Charles R Harris charlesr.har...@gmail.com wrote: On Thu, Feb 16, 2012 at 4:20 PM, josef.p

Re: [Numpy-discussion] test errors on deprecation/runtime warnings

2012-02-18 Thread Ralf Gommers
2012/2/17 Stéfan van der Walt ste...@sun.ac.za Hi Ralf On Thu, Feb 16, 2012 at 11:05 AM, Ralf Gommers ralf.gomm...@googlemail.com wrote: Last week we merged https://github.com/numpy/numpy/pull/201, which causes DeprecationWarning's and RuntimeWarning's to be converted to errors

Re: [Numpy-discussion] Proposed Roadmap Overview

2012-02-18 Thread Ralf Gommers
On Thu, Feb 16, 2012 at 11:39 PM, Travis Oliphant tra...@continuum.iowrote: Mark Wiebe and I have been discussing off and on (as well as talking with Charles) a good way forward to balance two competing desires: * addition of new features that are needed in NumPy * improving

Re: [Numpy-discussion] Proposed Roadmap Overview

2012-02-19 Thread Ralf Gommers
On Sun, Feb 19, 2012 at 6:47 AM, Benjamin Root ben.r...@ou.edu wrote: All kidding aside, is your concern that when Mark starts this that no one will be able to contribute until he is done? I can tell you right now that won't be the case as I will be trying to flesh out issues with datetime64

Re: [Numpy-discussion] Proposed Roadmap Overview

2012-02-19 Thread Ralf Gommers
On Sun, Feb 19, 2012 at 10:28 AM, Mark Wiebe mwwi...@gmail.com wrote: On Sun, Feb 19, 2012 at 3:16 AM, David Cournapeau courn...@gmail.comwrote: On Sun, Feb 19, 2012 at 8:08 AM, Mark Wiebe mwwi...@gmail.com wrote: On Sat, Feb 18, 2012 at 4:24 PM, David Cournapeau courn...@gmail.com wrote:

Re: [Numpy-discussion] How a transition to C++ could work

2012-02-19 Thread Ralf Gommers
On Sun, Feb 19, 2012 at 4:53 PM, Sturla Molden stu...@molden.no wrote: Den 19.02.2012 16:45, skrev Adam Klein: Just to add, with respect to acceptable compilation times, a judicious choice of C++ features is critical. I use Python to avoid recompiling my code all the time. I don't

Re: [Numpy-discussion] ABI status of Master

2012-02-22 Thread Ralf Gommers
On Thu, Feb 23, 2012 at 3:37 AM, Travis Oliphant teoliph...@gmail.comwrote: Hey all, From what I can tell, the master branch is still ABI compatible with NumPy 1.7. Is that true? I'd like to relabel the version of the master branch to 1.8.Does anyone see any problems with that?

Re: [Numpy-discussion] distributing pre-compiled f2py extensions on OSX

2012-02-25 Thread Ralf Gommers
On Fri, Feb 24, 2012 at 3:39 PM, Mark Bakker mark...@gmail.com wrote: Two short questions: 1. When I distribute pre-compiled f2py extensions for OSX, it seems that the users need gfortran installed, else it cannot find libgfortran.3.dylib. Is there a way to link that file with the extension?

Re: [Numpy-discussion] Problem Building Numpy with Python 2.7.1 and OS X 10.7.3

2012-02-25 Thread Ralf Gommers
On Thu, Feb 23, 2012 at 11:28 PM, Patrick Armstrong patri...@uvic.cawrote: Hi there, I'm having a problem building NumPy on Python 2.7.1 and OS X 10.7.3. Here is my build log: https://gist.github.com/1895377 Does anyone have any idea what might be happening? I get a very similar error

Re: [Numpy-discussion] distributing pre-compiled f2py extensions on OSX

2012-02-25 Thread Ralf Gommers
On Sat, Feb 25, 2012 at 9:29 PM, Mark Bakker mark...@gmail.com wrote: Thanks for the reply, Ralf. Can you point me a bit in the right direction. Scipy is pretty big. All Fortran sources in Scipy are wrapped with f2py, and can be compiled with gfortran the way you want. As a simple example,

[Numpy-discussion] ANN: SciPy 0.10.1 released

2012-02-27 Thread Ralf Gommers
Hi all, I am pleased to announce the availability of SciPy 0.10.1. This is a maintenance release, with no new features compared to 0.10.0. Sources and binaries can be found at http://sourceforge.net/projects/scipy/files/scipy/0.10.1/, release notes are copied below. Enjoy, The SciPy developers

Re: [Numpy-discussion] YouTrack License

2012-02-28 Thread Ralf Gommers
On Tue, Feb 28, 2012 at 8:12 PM, Travis Oliphant teoliph...@gmail.comwrote: I just received word that NumPy has a license to use TeamCity and YouTrack for NumPy development. YouTrack is a really nice issue tracker: http://www.jetbrains.com/youtrack/ TeamCity is a really nice Continuous

Re: [Numpy-discussion] Moving to gcc 4.* for win32 installers ?

2012-02-28 Thread Ralf Gommers
On Mon, Feb 6, 2012 at 10:54 PM, David Cournapeau courn...@gmail.comwrote: On Sat, Feb 4, 2012 at 3:55 PM, Ralf Gommers ralf.gomm...@googlemail.com wrote: On Wed, Dec 14, 2011 at 6:50 PM, Ralf Gommers ralf.gomm...@googlemail.com wrote: On Wed, Dec 14, 2011 at 3:04 PM, David

Re: [Numpy-discussion] Problem Building Numpy with Python 2.7.1 and OS X 10.7.3

2012-02-28 Thread Ralf Gommers
On Mon, Feb 27, 2012 at 1:47 AM, Patrick Armstrong patri...@uvic.ca wrote: Hi, On 2012-02-25, at 5:14 AM, Ralf Gommers wrote: Since you're using pip, I assume that gcc-4.2 is llvm-gcc. As a first step, I suggest using plain gcc and not using pip (so just python setup.py install). Also make

Re: [Numpy-discussion] Possible roadmap addendum: building better text file readers

2012-02-29 Thread Ralf Gommers
On Wed, Feb 29, 2012 at 7:57 PM, Erin Sheldon erin.shel...@gmail.comwrote: Excerpts from Nathaniel Smith's message of Wed Feb 29 13:17:53 -0500 2012: On Wed, Feb 29, 2012 at 3:11 PM, Erin Sheldon erin.shel...@gmail.com wrote: Excerpts from Nathaniel Smith's message of Tue Feb 28 17:22:16

Re: [Numpy-discussion] Cygwin compile: fatal error: fenv/fenv.c:

2012-02-29 Thread Ralf Gommers
On Wed, Feb 29, 2012 at 9:10 PM, Matt Miller mattm...@gmail.com wrote: Hi all, I am getting the following error when running `python setup.py install` for Numpy in Cygwin. This error happens on the latest as well as the maintenance branched for 1.5 and 1.6. This should fix it:

Re: [Numpy-discussion] Cygwin compile: fatal error: fenv/fenv.c

2012-02-29 Thread Ralf Gommers
On Wed, Feb 29, 2012 at 11:07 PM, Matt Miller mattm...@gmail.com wrote: More reading of the thread linked solved the issue. To reiterate, add numpy/ and change .c to .h in line 590 of ieee754.c.src. Ex: elif defined(__CYGWIN__) include numpy/fenv/fenv.h endif Thanks for confirming.

Re: [Numpy-discussion] Floating point close function?

2012-03-03 Thread Ralf Gommers
On Thu, Mar 1, 2012 at 11:44 PM, Joe Kington jking...@wisc.edu wrote: Is there a numpy function for testing floating point equality that returns a boolean array? I'm aware of np.allclose, but I need a boolean array. Properly handling NaN's and Inf's (as allclose does) would be a nice bonus.

Re: [Numpy-discussion] Floating point close function?

2012-03-03 Thread Ralf Gommers
On Sat, Mar 3, 2012 at 3:05 PM, Robert Kern robert.k...@gmail.com wrote: On Sat, Mar 3, 2012 at 13:59, Ralf Gommers ralf.gomm...@googlemail.com wrote: On Thu, Mar 1, 2012 at 11:44 PM, Joe Kington jking...@wisc.edu wrote: Is there a numpy function for testing floating point equality

Re: [Numpy-discussion] test errors on deprecation/runtime warnings

2012-03-04 Thread Ralf Gommers
On Sat, Feb 18, 2012 at 10:13 AM, Ralf Gommers ralf.gomm...@googlemail.comwrote: 2012/2/17 Stéfan van der Walt ste...@sun.ac.za Hi Ralf On Thu, Feb 16, 2012 at 11:05 AM, Ralf Gommers ralf.gomm...@googlemail.com wrote: Last week we merged https://github.com/numpy/numpy/pull/201, which

Re: [Numpy-discussion] Missing data again

2012-03-06 Thread Ralf Gommers
On Tue, Mar 6, 2012 at 9:25 PM, Nathaniel Smith n...@pobox.com wrote: On Sat, Mar 3, 2012 at 8:30 PM, Travis Oliphant tra...@continuum.io wrote: Hi all, Hi Travis, Thanks for bringing this back up. Have you looked at the summary from the last thread?

Re: [Numpy-discussion] Bus error for Debian / SPARC on current trunk

2012-03-06 Thread Ralf Gommers
On Tue, Mar 6, 2012 at 6:53 AM, Matthew Brett matthew.br...@gmail.comwrote: Hi, On Mon, Mar 5, 2012 at 8:04 PM, Mark Wiebe mwwi...@gmail.com wrote: I've pushed a bugfix to github, can you confirm that the crash goes away on your test box? Thanks for tracking that down, the stack trace was

Re: [Numpy-discussion] Memory leak in numpy

2012-03-09 Thread Ralf Gommers
On Fri, Mar 9, 2012 at 3:07 PM, FRENK Andreas andreas.fr...@3ds.com wrote: Dear Community, I have an issue with numpy consuming more and more memory. According to ticket: http://projects.scipy.org/numpy/ticket/1427 This is a known issue. It should be fixed in 2.0.0.dev-9451260. What

Re: [Numpy-discussion] addition, multiplication of a polynomial and np.{float, int}

2012-03-09 Thread Ralf Gommers
On Wed, Mar 7, 2012 at 11:02 PM, Pierre Haessig pierre.haes...@crans.orgwrote: Hi Charles, Le 07/03/2012 18:00, Charles R Harris a écrit : That's a good idea, I'll take care of it. Note the caveat about the coefficients going in the opposite direction. Great ! In the mean time I changed

Re: [Numpy-discussion] unique along axis?

2012-03-16 Thread Ralf Gommers
On Mon, Mar 12, 2012 at 8:04 PM, Neal Becker ndbeck...@gmail.com wrote: I see unique does not take an axis arg. Suggested way to apply unique to each column of a 2d array? A for-loop? I'm guessing that there isn't an axis keyword because the number of unique elements per column may not be

Re: [Numpy-discussion] Build error on OSX from commit 72c6fbd

2012-03-17 Thread Ralf Gommers
On Sat, Mar 17, 2012 at 9:24 AM, Matthew Brett matthew.br...@gmail.comwrote: Hi, As of commit 72c6fbd, I am getting the appended build error on OSX 10.6.8. I couldn't immediately see what might have caused the problem. I can't reproduce it, but it should be fixed by

Re: [Numpy-discussion] Trouble building NumPy on PPC64

2012-03-20 Thread Ralf Gommers
On Mon, Mar 19, 2012 at 6:45 PM, Andreas H. li...@hilboll.de wrote: Hi all, I have troube installing numpy in a virtual environment on a SuSE Enterprise 11 server (ppc64). Here is what I did: curl -O https://raw.github.com/pypa/virtualenv/master/virtualenv.py python virtualenv.py

Re: [Numpy-discussion] numpydoc.traitsdoc error

2012-03-24 Thread Ralf Gommers
On Sat, Mar 24, 2012 at 6:58 PM, Brad Buran bbu...@cns.nyu.edu wrote: Not sure if this is the appropriate place to report the issue, but I've been getting the following error when trying to build my docs using Sphinx 1.1.3: File C:\Python27\lib\site-packages\numpydoc\numpydoc.py, line 36,

[Numpy-discussion] label NA and datetime as experimental

2012-03-25 Thread Ralf Gommers
Hi, We decided to label both NA and datetime APIs as experimental for the 1.7.0 release. I made a PR that does this, please review: https://github.com/numpy/numpy/pull/240 Ralf ___ NumPy-Discussion mailing list NumPy-Discussion@scipy.org

[Numpy-discussion] empty chararrays (ticket 1948)

2012-03-25 Thread Ralf Gommers
Hi, In ticket 1948 a backwards compatibility issue with chararray is reported. Indexing a chararray with [] or a bool array of False used to return [] in numpy 1.2.1 (consistent with ndarray behavior), but now returns an empty string. Unfortunately this changed behavior has been present for the

Re: [Numpy-discussion] 1.7 blockers

2012-03-25 Thread Ralf Gommers
On Sat, Mar 24, 2012 at 10:13 PM, Charles R Harris charlesr.har...@gmail.com wrote: Hi All, There several problems with numpy master that need to be fixed before a release can be considered. 1. Datetime on windows with mingw. 2. Bus error on SPARC, ticket #2076. 3. NA and

Re: [Numpy-discussion] 1.7 blockers

2012-03-25 Thread Ralf Gommers
On Sun, Mar 25, 2012 at 6:48 PM, Charles R Harris charlesr.har...@gmail.com wrote: On Sun, Mar 25, 2012 at 10:33 AM, Ralf Gommers ralf.gomm...@googlemail.com wrote: On Sat, Mar 24, 2012 at 10:13 PM, Charles R Harris charlesr.har...@gmail.com wrote: Hi All, There several problems

Re: [Numpy-discussion] empty chararrays (ticket 1948)

2012-03-25 Thread Ralf Gommers
On Sun, Mar 25, 2012 at 7:03 PM, Charles R Harris charlesr.har...@gmail.com wrote: On Sun, Mar 25, 2012 at 10:12 AM, Ralf Gommers ralf.gomm...@googlemail.com wrote: Hi, In ticket 1948 a backwards compatibility issue with chararray is reported. Indexing a chararray with [] or a bool

Re: [Numpy-discussion] numpydoc.traitsdoc error

2012-03-25 Thread Ralf Gommers
On Sat, Mar 24, 2012 at 5:39 PM, Ralf Gommers ralf.gomm...@googlemail.com wrote: On Sat, Mar 24, 2012 at 6:58 PM, Brad Buran bbu...@cns.nyu.edu wrote: Not sure if this is the appropriate place to report the issue, but I've been getting the following error when trying to build my docs using

Re: [Numpy-discussion] 1.7 blockers

2012-03-25 Thread Ralf Gommers
On Sat, Mar 24, 2012 at 10:13 PM, Charles R Harris charlesr.har...@gmail.com wrote: Hi All, There several problems with numpy master that need to be fixed before a release can be considered. 1. Datetime on windows with mingw. 2. Bus error on SPARC, ticket #2076. 3. NA and

Re: [Numpy-discussion] label NA and datetime as experimental

2012-03-26 Thread Ralf Gommers
On Mon, Mar 26, 2012 at 5:42 PM, Charles R Harris charlesr.har...@gmail.com wrote: On Mon, Mar 26, 2012 at 2:29 AM, Richard Hattersley rhatters...@gmail.com wrote: Hi, My team are currently experimenting with extending datetime to allow alternative, non-physical calendars (e.g. 360-day

Re: [Numpy-discussion] 1.7 blockers

2012-03-27 Thread Ralf Gommers
On Mon, Mar 26, 2012 at 1:27 AM, Charles R Harris charlesr.har...@gmail.com wrote: On Sun, Mar 25, 2012 at 3:14 PM, Ralf Gommers ralf.gomm...@googlemail.com wrote: On Sat, Mar 24, 2012 at 10:13 PM, Charles R Harris charlesr.har...@gmail.com wrote: Hi All, There several problems

Re: [Numpy-discussion] Testsuite fails with Python 2.7.3rc1 and 3.2.3rc1 (Debian)

2012-03-27 Thread Ralf Gommers
On Wed, Mar 21, 2012 at 12:28 AM, Sandro Tosi matrixh...@gmail.com wrote: Hello, I've reported http://projects.scipy.org/numpy/ticket/2085 and Ralf asked for bringing that up here: is anyone able to replicate the problem described in that ticket? The debian bug tracking the problem is:

Re: [Numpy-discussion] Style for pad implementation in 'pad' namespace or functions under np.lib

2012-03-28 Thread Ralf Gommers
On Wed, Mar 28, 2012 at 9:31 PM, Tim Cera t...@cerazone.net wrote: I have been developing a set of pad functions to pad arrays in different ways. Really close to having it accepted into numpy, but I want to revisit an implementation issue that I have become worried about. Should these

Re: [Numpy-discussion] Testsuite fails with Python 2.7.3rc1 and 3.2.3rc1 (Debian)

2012-04-01 Thread Ralf Gommers
On Sat, Mar 31, 2012 at 12:39 PM, Sandro Tosi matrixh...@gmail.com wrote: Hi Ralf sorry for the late reply. On Tue, Mar 27, 2012 at 22:29, Ralf Gommers ralf.gomm...@googlemail.com wrote: On Wed, Mar 21, 2012 at 12:28 AM, Sandro Tosi matrixh...@gmail.com wrote: Hello, I've

Re: [Numpy-discussion] Testsuite fails with Python 2.7.3rc1 and 3.2.3rc1 (Debian)

2012-04-01 Thread Ralf Gommers
On Sun, Apr 1, 2012 at 12:08 PM, Sandro Tosi matrixh...@gmail.com wrote: On Sun, Apr 1, 2012 at 11:32, Ralf Gommers ralf.gomm...@googlemail.com wrote: Thanks. Can you explain what happens when running the tests? I don't understand why the log says Fatal Python error...Aborted

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