Answering my own question. This is the command line for cmake that
finally allowed me to compile OB (and pass all the tests in "make
test"!):
../../cmake-2.8.0/bin/cmake.exe -G"MSYS Makefiles"
-DZLIB_LIBRARY=/usr/local/lib/libz.a
-DZLIB_INCLUDE_DIR=/usr/local/inclulde
-DEIGEN2_INCLUDE_DIR=/usr/l
Hi,
Many thanks for the clarification, I misread the documentation
(http://openbabel.org/docs/2.3.0/Command-line_tools/babel.html#differences-between-babel-and-obabel)
and thought it was the lower case -o from the output file (i.e. -osdf). It
might be worth having an actual example in the docum
