Re: [OpenBabel-Devel] Library Generation & Stereo-isomer Enumeration

2015-02-06 Thread Geoffrey Hutchison
> Sounds very interesting. As it turns out, someone sent me a script that will be released soon as open source after publication. I'm putting up as many scripts as possible into the PQR repository onto GitHub and will add them to the Open Babel contributed archive once they're a bit more polis

Re: [OpenBabel-Devel] Library Generation & Stereo-isomer Enumeration

2015-02-06 Thread Noel O'Boyle
Sounds very interesting. Regarding the stereo, I haven't done exactly that, but the general procedure is to loop over the stereo data, get the Config, change the Config, and set the Config. For tet centers, changing the Winding will do the job, while for cis/trans, changing the shape from U to Z w

[OpenBabel-Devel] Library Generation & Stereo-isomer Enumeration

2015-02-05 Thread Geoffrey Hutchison
Hi there, One of my current side-projects is the generation of the Pitt Quantum Repository (http://pqr.pitt.edu/). We're producing a growing open data repository of small molecules with systematically-derived quantum properties. The first version of the website will go "live" sometime this summ