Re: [OpenBabel-Devel] obminimize

2010-11-19 Thread christophersw...@btconnect.com
Hi, I'm not sure why pdb was the output format I was certainly not expecting it. On 19 Nov 2010, at 13:55, Pascal Muller wrote: > Hi, > >> MASTER00000000 160 160 >> END >> ENDMDL >> MODEL3 >> COMPNDUNNAMED >> AUTHORGENERATED BY OPEN

Re: [OpenBabel-Devel] obminimize

2010-11-19 Thread Pascal Muller
Hi, > MASTER        0    0    0    0    0    0    0    0   16    0   16    0 > END > ENDMDL > MODEL        3 > COMPND    UNNAMED > AUTHOR    GENERATED BY OPEN BABEL 2.3.0 I don't know if it will help, but the tag "END" should be the very last line of the PDB file. There is only one occurence of "

[OpenBabel-Devel] obminimize

2010-11-19 Thread christophersw...@btconnect.com
Hi, I'm in the process of rewriting iBabel and I've taken the opportunity to properly integrate all the OpenBabel tools in testing I've come across a few things I need to ask about. Using obminimize it seems the default output is pdb. However when I use obminimize for a sdf file containing mul