Try:
obminimize -ff MMFF94 -sd source.sdf > target.sdf
----
Pozdrawiam, | Best regards,
Maciek Wójcikowski
mac...@wojcikowski.pl
2013/2/27 Оги Боги <alchemist...@abv.bg>
> Hi guys,
>
> I am trying to use obminimize under 64bit windows 7 in order to minimize
> geometry of molecules inside multimolecule sdf file. I'm using the
> following command:
>
> obminimize -ff MMFF94 -sd <path-to-sdf>
>
> The problem is that obminimize prints results from minimization procedure
> in console but nothing happens with atom coordinates in sdf file. Is that
> normal or I've made some mistake?
>
>
>
>
>
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